RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 F8WEM9 126 aa11.66□□□□□ -0.54
HDDC3-203ENST00000494993 VAMP3Q15836 100 aa11.6□□□□□ -0.55
HDDC3-203ENST00000494993 LINC00575Q6W349 94 aa11.6□□□□□ -0.55
HDDC3-203ENST00000494993 Q6JHZ5 121 aa11.58□□□□□ -0.56
HDDC3-203ENST00000494993 Q6ZQY7 126 aa11.58□□□□□ -0.56
HDDC3-203ENST00000494993 TRBV7-7A0A0K0K1E9 115 aa11.57□□□□□ -0.56
HDDC3-203ENST00000494993 CLEC2BQ92478 149 aa11.57□□□□□ -0.56
HDDC3-203ENST00000494993 hADV29S1A0JD25 119 aa11.56□□□□□ -0.56
HDDC3-203ENST00000494993 IGFL1Q6UW32 110 aa11.56□□□□□ -0.56
HDDC3-203ENST00000494993 SNRPEP62304 92 aaKnown RBP11.55□□□□□ -0.56
HDDC3-203ENST00000494993 OCIAD2Q56VL3 154 aa11.52□□□□□ -0.57
HDDC3-203ENST00000494993 OBSCN-AS1Q96MR7 158 aa11.52□□□□□ -0.57
HDDC3-203ENST00000494993 Q75L30 129 aa11.51□□□□□ -0.57
HDDC3-203ENST00000494993 ATP11AUNQ6ZP68 121 aa11.5□□□□□ -0.57
HDDC3-203ENST00000494993 Q6Q795 121 aa11.48□□□□□ -0.57
HDDC3-203ENST00000494993 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.48□□□□□ -0.57
HDDC3-203ENST00000494993 PPDPFLQ8WWR9 84 aa11.45□□□□□ -0.58
HDDC3-203ENST00000494993 LST1O00453 97 aa11.43□□□□□ -0.58
HDDC3-203ENST00000494993 SNHG12Q9BXW3 62 aa11.42□□□□□ -0.58
HDDC3-203ENST00000494993 HSBP1L1C9JCN9 74 aa11.41□□□□□ -0.58
HDDC3-203ENST00000494993 BVES-AS1Q5T3Y7 98 aa11.41□□□□□ -0.58
HDDC3-203ENST00000494993 H3BUT2 72 aa11.4□□□□□ -0.58
HDDC3-203ENST00000494993 SCGB1D1O95968 90 aa11.39□□□□□ -0.59
HDDC3-203ENST00000494993 Q96NJ1 140 aa11.39□□□□□ -0.59
HDDC3-203ENST00000494993 C12orf57Q99622 126 aa11.39□□□□□ -0.59
HDDC3-203ENST00000494993 HIST1H2BLQ99880 126 aa11.38□□□□□ -0.59
HDDC3-203ENST00000494993 HIST3H2BBQ8N257 126 aa11.37□□□□□ -0.59
HDDC3-203ENST00000494993 SS18L2Q9UHA2 77 aa11.35□□□□□ -0.59
HDDC3-203ENST00000494993 S100A2P29034 98 aa11.34□□□□□ -0.59
HDDC3-203ENST00000494993 C20orf166-AS1Q96NR2 134 aa11.34□□□□□ -0.59
HDDC3-203ENST00000494993 HIST1H4GQ99525 98 aa11.34□□□□□ -0.59
HDDC3-203ENST00000494993 A8MUU9 505 aa11.31□□□□□ -0.6
HDDC3-203ENST00000494993 TEN1Q86WV5 123 aa11.29□□□□□ -0.6
HDDC3-203ENST00000494993 CFC1P0CG37 223 aa11.28□□□□□ -0.6
HDDC3-203ENST00000494993 KRTAP9-8Q9BYQ0 159 aa11.27□□□□□ -0.61
HDDC3-203ENST00000494993 COX8AP10176 69 aa11.25□□□□□ -0.61
HDDC3-203ENST00000494993 NDUFV3P56181 108 aaKnown RBP11.25□□□□□ -0.61
HDDC3-203ENST00000494993 TRBV20-1A0A075B6N2 111 aa11.24□□□□□ -0.61
HDDC3-203ENST00000494993 A0A087WSZ3 146 aa11.24□□□□□ -0.61
HDDC3-203ENST00000494993 SNCGO76070 127 aa11.24□□□□□ -0.61
HDDC3-203ENST00000494993 USH2AO75445 5202 aa11.24□□□□□ -0.61
HDDC3-203ENST00000494993 H0YGX0 51 aa11.22□□□□□ -0.61
HDDC3-203ENST00000494993 RAB37Q96AX2 223 aa11.22□□□□□ -0.61
HDDC3-203ENST00000494993 FAM218AQ96MZ4 157 aa11.22□□□□□ -0.61
HDDC3-203ENST00000494993 SSPOA2VEC9 5147 aa11.21□□□□□ -0.61
HDDC3-203ENST00000494993 DSCR10P59022 87 aa11.2□□□□□ -0.62
HDDC3-203ENST00000494993 DLEU1O43261 78 aa11.19□□□□□ -0.62
HDDC3-203ENST00000494993 H3BMG7 143 aa11.18□□□□□ -0.62
HDDC3-203ENST00000494993 S100A6P06703 90 aa11.18□□□□□ -0.62
HDDC3-203ENST00000494993 A0A0B4J2C4 111 aa11.17□□□□□ -0.62
HDDC3-203ENST00000494993 KRTAP9-1A8MXZ3 250 aaPredicted RBP11.17□□□□□ -0.62
HDDC3-203ENST00000494993 SIGMAR1Q99720 223 aa11.14□□□□□ -0.63
HDDC3-203ENST00000494993 A0A1B0GX51 115 aa11.13□□□□□ -0.63
HDDC3-203ENST00000494993 GHRHP01286 108 aa11.13□□□□□ -0.63
HDDC3-203ENST00000494993 FABP2P12104 132 aa11.13□□□□□ -0.63
HDDC3-203ENST00000494993 A0A1W2PNM2 257 aa11.12□□□□□ -0.63
HDDC3-203ENST00000494993 KRTAP9-7A8MTY7 169 aa11.12□□□□□ -0.63
HDDC3-203ENST00000494993 HIGD1BQ9P298 99 aa11.12□□□□□ -0.63
HDDC3-203ENST00000494993 KRTAP16-1A8MUX0 517 aa11.11□□□□□ -0.63
HDDC3-203ENST00000494993 C14orf144Q96I85 54 aa11.11□□□□□ -0.63
HDDC3-203ENST00000494993 LINC00313P59037 77 aa11.09□□□□□ -0.63
HDDC3-203ENST00000494993 FAM236DA0A1B0GTK5 79 aa11.08□□□□□ -0.64
HDDC3-203ENST00000494993 MT2AP02795 61 aa11.08□□□□□ -0.64
HDDC3-203ENST00000494993 FAM236CP0DP71 79 aa11.08□□□□□ -0.64
HDDC3-203ENST00000494993 IGKV4-1P06312 121 aa11.06□□□□□ -0.64
HDDC3-203ENST00000494993 C2orf91Q6ZV80 131 aa11.06□□□□□ -0.64
HDDC3-203ENST00000494993 PRO1854Q9UHT4 67 aa11.05□□□□□ -0.64
HDDC3-203ENST00000494993 SPATA45Q537H7 98 aa11.04□□□□□ -0.64
HDDC3-203ENST00000494993 PAM16Q9Y3D7 125 aa11.04□□□□□ -0.64
HDDC3-203ENST00000494993 CEND1Q8N111 149 aa11.03□□□□□ -0.64
HDDC3-203ENST00000494993 MPLKIPQ8TAP9 179 aa11.03□□□□□ -0.64
HDDC3-203ENST00000494993 TRBV7-4A0A0J9YYF1 115 aa11.02□□□□□ -0.65
HDDC3-203ENST00000494993 RBM12B-AS1Q9P1G2 102 aa11.02□□□□□ -0.65
HDDC3-203ENST00000494993 TRIAP1O43715 76 aa11.01□□□□□ -0.65
HDDC3-203ENST00000494993 HRES1P13985 223 aa11.01□□□□□ -0.65
HDDC3-203ENST00000494993 NOTCH2NLQ7Z3S9 236 aa11.01□□□□□ -0.65
HDDC3-203ENST00000494993 ANKRD29Q8N6D5 301 aa11.01□□□□□ -0.65
HDDC3-203ENST00000494993 TMEM238LA0A1B0GVL6 79 aa11□□□□□ -0.65
HDDC3-203ENST00000494993 A6NJY4 79 aa11□□□□□ -0.65
HDDC3-203ENST00000494993 FCGBPQ9Y6R7 5405 aaPredicted RBP11□□□□□ -0.65
HDDC3-203ENST00000494993 MT1FP04733 61 aa10.99□□□□□ -0.65
HDDC3-203ENST00000494993 A0A1B0GV72 72 aa10.97□□□□□ -0.65
HDDC3-203ENST00000494993 FXYD2P54710 66 aa10.97□□□□□ -0.65
HDDC3-203ENST00000494993 LCE2BO14633 110 aa10.96□□□□□ -0.65
HDDC3-203ENST00000494993 DNAL4O96015 105 aa10.96□□□□□ -0.65
HDDC3-203ENST00000494993 DEFB116Q30KQ4 102 aa10.96□□□□□ -0.65
HDDC3-203ENST00000494993 VAMP8Q9BV40 100 aa10.96□□□□□ -0.65
HDDC3-203ENST00000494993 LINC00472Q9H8W2 130 aa10.96□□□□□ -0.65
HDDC3-203ENST00000494993 ORMDL1Q9P0S3 153 aa10.96□□□□□ -0.65
HDDC3-203ENST00000494993 S100A1P23297 94 aa10.95□□□□□ -0.66
HDDC3-203ENST00000494993 H3BQ85 93 aa10.94□□□□□ -0.66
HDDC3-203ENST00000494993 IGHV6-1A0A0B4J1U7 121 aa10.93□□□□□ -0.66
HDDC3-203ENST00000494993 KRTAP10-10P60014 251 aa10.92□□□□□ -0.66
HDDC3-203ENST00000494993 KRTAP9-3Q9BYQ3 159 aa10.92□□□□□ -0.66
HDDC3-203ENST00000494993 TRACP01848 142 aa10.91□□□□□ -0.66
HDDC3-203ENST00000494993 CCKP06307 115 aa10.91□□□□□ -0.66
HDDC3-203ENST00000494993 KRTAP19-1Q8IUB9 90 aa10.91□□□□□ -0.66
HDDC3-203ENST00000494993 TMEM256-PLSCR3K7ERE1 68 aa10.9□□□□□ -0.66
HDDC3-203ENST00000494993 PSMB2P49721 201 aa10.87□□□□□ -0.67
HDDC3-203ENST00000494993 C8orf87E5RJ46 101 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms