RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 A0A1B0GWB2 263 aa6.7□□□□□ -1.34
SKA1-205ENST00000494518 HIST1H2BKO60814 126 aa6.7□□□□□ -1.34
SKA1-205ENST00000494518 HIST1H2BJP06899 126 aa6.7□□□□□ -1.34
SKA1-205ENST00000494518 HIST1H2BOP23527 126 aa6.7□□□□□ -1.34
SKA1-205ENST00000494518 HIST1H2BBP33778 126 aa6.7□□□□□ -1.34
SKA1-205ENST00000494518 HIST1H2BDP58876 126 aa6.7□□□□□ -1.34
SKA1-205ENST00000494518 HIST1H2BCP62807 126 aa6.7□□□□□ -1.34
SKA1-205ENST00000494518 HIST2H2BEQ16778 126 aa6.7□□□□□ -1.34
SKA1-205ENST00000494518 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.7□□□□□ -1.34
SKA1-205ENST00000494518 Q5XG85 94 aa6.7□□□□□ -1.34
SKA1-205ENST00000494518 PET117Q6UWS5 81 aa6.7□□□□□ -1.34
SKA1-205ENST00000494518 HIST1H2BHQ93079 126 aa6.7□□□□□ -1.34
SKA1-205ENST00000494518 HIST1H2BNQ99877 126 aa6.7□□□□□ -1.34
SKA1-205ENST00000494518 HIST1H2BMQ99879 126 aa6.7□□□□□ -1.34
SKA1-205ENST00000494518 C3orf79P0CE67 100 aa6.69□□□□□ -1.34
SKA1-205ENST00000494518 TRBV7-6A0A0J9YX20 115 aa6.68□□□□□ -1.34
SKA1-205ENST00000494518 KRTDAPP60985 99 aa6.67□□□□□ -1.34
SKA1-205ENST00000494518 C9orf118A6NHY6 69 aa6.66□□□□□ -1.34
SKA1-205ENST00000494518 MUSTN1Q8IVN3 82 aa6.66□□□□□ -1.34
SKA1-205ENST00000494518 ATOH7Q8N100 152 aa6.66□□□□□ -1.34
SKA1-205ENST00000494518 TCL1BO95988 128 aa6.65□□□□□ -1.34
SKA1-205ENST00000494518 SMIM11BQ8TCY0 68 aa6.65□□□□□ -1.34
SKA1-205ENST00000494518 Q6Q795 121 aa6.64□□□□□ -1.35
SKA1-205ENST00000494518 F8WEM9 126 aa6.63□□□□□ -1.35
SKA1-205ENST00000494518 IFITM1P13164 125 aa6.63□□□□□ -1.35
SKA1-205ENST00000494518 PCP2Q8IVA1 136 aa6.63□□□□□ -1.35
SKA1-205ENST00000494518 COPS9Q8WXC6 57 aa6.63□□□□□ -1.35
SKA1-205ENST00000494518 NHP2Q9NX24 153 aaKnown RBP6.62□□□□□ -1.35
SKA1-205ENST00000494518 A4D1N5 150 aa6.61□□□□□ -1.35
SKA1-205ENST00000494518 TRAV13-2A0A0B4J235 113 aa6.6□□□□□ -1.35
SKA1-205ENST00000494518 OBSCN-AS1Q96MR7 158 aa6.6□□□□□ -1.35
SKA1-205ENST00000494518 C20orf202A1L168 122 aa6.59□□□□□ -1.35
SKA1-205ENST00000494518 Q6ZVH6 145 aa6.59□□□□□ -1.35
SKA1-205ENST00000494518 IGFL1Q6UW32 110 aa6.58□□□□□ -1.36
SKA1-205ENST00000494518 Q6ZQY7 126 aa6.58□□□□□ -1.36
SKA1-205ENST00000494518 TRBV7-7A0A0K0K1E9 115 aa6.57□□□□□ -1.36
SKA1-205ENST00000494518 LINC00575Q6W349 94 aa6.57□□□□□ -1.36
SKA1-205ENST00000494518 CLEC2BQ92478 149 aa6.57□□□□□ -1.36
SKA1-205ENST00000494518 ATP11AUNQ6ZP68 121 aa6.56□□□□□ -1.36
SKA1-205ENST00000494518 SSPOA2VEC9 5147 aa6.55□□□□□ -1.36
SKA1-205ENST00000494518 hADV29S1A0JD25 119 aa6.55□□□□□ -1.36
SKA1-205ENST00000494518 VAMP3Q15836 100 aa6.55□□□□□ -1.36
SKA1-205ENST00000494518 USH2AO75445 5202 aa6.55□□□□□ -1.36
SKA1-205ENST00000494518 COA6Q5JTJ3 125 aaKnown RBP6.54□□□□□ -1.36
SKA1-205ENST00000494518 Q6JHZ5 121 aa6.54□□□□□ -1.36
SKA1-205ENST00000494518 Q75L30 129 aa6.54□□□□□ -1.36
SKA1-205ENST00000494518 OCIAD2Q56VL3 154 aa6.53□□□□□ -1.36
SKA1-205ENST00000494518 H3BUT2 72 aa6.52□□□□□ -1.37
SKA1-205ENST00000494518 Q96NJ1 140 aa6.52□□□□□ -1.37
SKA1-205ENST00000494518 C12orf57Q99622 126 aa6.51□□□□□ -1.37
SKA1-205ENST00000494518 LST1O00453 97 aa6.49□□□□□ -1.37
SKA1-205ENST00000494518 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.48□□□□□ -1.37
SKA1-205ENST00000494518 SNHG12Q9BXW3 62 aa6.48□□□□□ -1.37
SKA1-205ENST00000494518 SNRPEP62304 92 aaKnown RBP6.45□□□□□ -1.38
SKA1-205ENST00000494518 HSBP1L1C9JCN9 74 aa6.43□□□□□ -1.38
SKA1-205ENST00000494518 CFC1P0CG37 223 aa6.43□□□□□ -1.38
SKA1-205ENST00000494518 BVES-AS1Q5T3Y7 98 aa6.43□□□□□ -1.38
SKA1-205ENST00000494518 C20orf166-AS1Q96NR2 134 aa6.43□□□□□ -1.38
SKA1-205ENST00000494518 KRTAP3-1Q9BYR8 98 aa6.43□□□□□ -1.38
SKA1-205ENST00000494518 A8MUU9 505 aa6.42□□□□□ -1.38
SKA1-205ENST00000494518 DSCR10P59022 87 aa6.42□□□□□ -1.38
SKA1-205ENST00000494518 PPDPFLQ8WWR9 84 aa6.42□□□□□ -1.38
SKA1-205ENST00000494518 SS18L2Q9UHA2 77 aa6.42□□□□□ -1.38
SKA1-205ENST00000494518 TRBV20-1A0A075B6N2 111 aa6.41□□□□□ -1.38
SKA1-205ENST00000494518 HIST3H2BBQ8N257 126 aa6.41□□□□□ -1.38
SKA1-205ENST00000494518 HIST1H4GQ99525 98 aa6.41□□□□□ -1.38
SKA1-205ENST00000494518 A0A087WSZ3 146 aa6.4□□□□□ -1.38
SKA1-205ENST00000494518 SCGB1D1O95968 90 aa6.4□□□□□ -1.38
SKA1-205ENST00000494518 HIST1H2BLQ99880 126 aa6.4□□□□□ -1.38
SKA1-205ENST00000494518 S100A2P29034 98 aa6.39□□□□□ -1.39
SKA1-205ENST00000494518 FCGBPQ9Y6R7 5405 aaPredicted RBP6.38□□□□□ -1.39
SKA1-205ENST00000494518 FAM236DA0A1B0GTK5 79 aa6.38□□□□□ -1.39
SKA1-205ENST00000494518 FAM236CP0DP71 79 aa6.38□□□□□ -1.39
SKA1-205ENST00000494518 TEN1Q86WV5 123 aa6.38□□□□□ -1.39
SKA1-205ENST00000494518 FAM218AQ96MZ4 157 aa6.38□□□□□ -1.39
SKA1-205ENST00000494518 SIGMAR1Q99720 223 aa6.38□□□□□ -1.39
SKA1-205ENST00000494518 MT2AP02795 61 aa6.37□□□□□ -1.39
SKA1-205ENST00000494518 NDUFV3P56181 108 aaKnown RBP6.37□□□□□ -1.39
SKA1-205ENST00000494518 KRTAP16-1A8MUX0 517 aa6.36□□□□□ -1.39
SKA1-205ENST00000494518 RAB37Q96AX2 223 aa6.35□□□□□ -1.39
SKA1-205ENST00000494518 H3BMG7 143 aa6.34□□□□□ -1.39
SKA1-205ENST00000494518 A0A1B0GV72 72 aa6.33□□□□□ -1.4
SKA1-205ENST00000494518 MT1FP04733 61 aa6.33□□□□□ -1.4
SKA1-205ENST00000494518 COX8AP10176 69 aa6.33□□□□□ -1.4
SKA1-205ENST00000494518 FABP2P12104 132 aa6.33□□□□□ -1.4
SKA1-205ENST00000494518 A0A1W2PNM2 257 aa6.32□□□□□ -1.4
SKA1-205ENST00000494518 SNCGO76070 127 aa6.32□□□□□ -1.4
SKA1-205ENST00000494518 H0YGX0 51 aa6.31□□□□□ -1.4
SKA1-205ENST00000494518 LINC00313P59037 77 aa6.31□□□□□ -1.4
SKA1-205ENST00000494518 IGKV4-1P06312 121 aa6.3□□□□□ -1.4
SKA1-205ENST00000494518 NOTCH2NLQ7Z3S9 236 aa6.3□□□□□ -1.4
SKA1-205ENST00000494518 C14orf144Q96I85 54 aa6.3□□□□□ -1.4
SKA1-205ENST00000494518 HRES1P13985 223 aa6.29□□□□□ -1.4
SKA1-205ENST00000494518 DEFB116Q30KQ4 102 aa6.29□□□□□ -1.4
SKA1-205ENST00000494518 A0A0B4J2C4 111 aa6.28□□□□□ -1.4
SKA1-205ENST00000494518 S100A6P06703 90 aa6.28□□□□□ -1.4
SKA1-205ENST00000494518 KRTAP10-10P60014 251 aa6.28□□□□□ -1.4
SKA1-205ENST00000494518 RBM12B-AS1Q9P1G2 102 aa6.27□□□□□ -1.41
SKA1-205ENST00000494518 DLEU1O43261 78 aa6.26□□□□□ -1.41
SKA1-205ENST00000494518 MPLKIPQ8TAP9 179 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms