RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 BCE1O60756 84 aa13.07□□□□□ -0.32
CCDC88B-208ENST00000492980 FBN3Q75N90 2809 aa13.06□□□□□ -0.32
CCDC88B-208ENST00000492980 IGLV8-61A0A075B6I0 122 aa13.06□□□□□ -0.32
CCDC88B-208ENST00000492980 C1orf134Q5TEV5 83 aa13.05□□□□□ -0.32
CCDC88B-208ENST00000492980 IGFL1Q6UW32 110 aa13.05□□□□□ -0.32
CCDC88B-208ENST00000492980 SS18L2Q9UHA2 77 aa13.05□□□□□ -0.32
CCDC88B-208ENST00000492980 SPRR1BP22528 89 aa13.04□□□□□ -0.32
CCDC88B-208ENST00000492980 KRTAP13-1Q8IUC0 172 aa13.04□□□□□ -0.32
CCDC88B-208ENST00000492980 BPY2O14599 106 aa13.04□□□□□ -0.32
CCDC88B-208ENST00000492980 CRYGAP11844 174 aa13.03□□□□□ -0.32
CCDC88B-208ENST00000492980 A0A0G2JQZ4 141 aa13.03□□□□□ -0.32
CCDC88B-208ENST00000492980 LY6G6CO95867 125 aa13.03□□□□□ -0.32
CCDC88B-208ENST00000492980 KRTAP21-3Q3LHN1 58 aa13.03□□□□□ -0.32
CCDC88B-208ENST00000492980 Q8N9L7 120 aa13.02□□□□□ -0.33
CCDC88B-208ENST00000492980 IGKV4-1P06312 121 aa13.01□□□□□ -0.33
CCDC88B-208ENST00000492980 DNAH6Q9C0G6 4158 aa13□□□□□ -0.33
CCDC88B-208ENST00000492980 IGLV5-52A0A0A0MRZ9 124 aa12.97□□□□□ -0.33
CCDC88B-208ENST00000492980 PLAC8Q9NZF1 115 aa12.95□□□□□ -0.34
CCDC88B-208ENST00000492980 TGP01266 2768 aa12.95□□□□□ -0.34
CCDC88B-208ENST00000492980 SRRM2Q9UQ35 2752 aaKnown RBP12.94□□□□□ -0.34
CCDC88B-208ENST00000492980 CYSTM1Q9H1C7 97 aa12.94□□□□□ -0.34
CCDC88B-208ENST00000492980 TRAV7A0A075B6U4 112 aa12.94□□□□□ -0.34
CCDC88B-208ENST00000492980 WWC2-AS2Q96NR7 200 aa12.94□□□□□ -0.34
CCDC88B-208ENST00000492980 SMIM20Q8N5G0 67 aa12.93□□□□□ -0.34
CCDC88B-208ENST00000492980 ALMS1Q8TCU4 4167 aa12.9□□□□□ -0.34
CCDC88B-208ENST00000492980 PSORS1C2Q9UIG4 136 aa12.89□□□□□ -0.35
CCDC88B-208ENST00000492980 DSCR10P59022 87 aa12.89□□□□□ -0.35
CCDC88B-208ENST00000492980 DNAH8Q96JB1 4490 aa12.89□□□□□ -0.35
CCDC88B-208ENST00000492980 A0A087WSZ3 146 aa12.88□□□□□ -0.35
CCDC88B-208ENST00000492980 C20orf197Q8N268 126 aa12.84□□□□□ -0.35
CCDC88B-208ENST00000492980 FRAS1Q86XX4 4008 aa12.83□□□□□ -0.36
CCDC88B-208ENST00000492980 K7EQZ3 153 aa12.82□□□□□ -0.36
CCDC88B-208ENST00000492980 LINC00483Q53H64 154 aa12.82□□□□□ -0.36
CCDC88B-208ENST00000492980 DNAH11Q96DT5 4516 aa12.8□□□□□ -0.36
CCDC88B-208ENST00000492980 KRTAP10-2P60368 255 aa12.8□□□□□ -0.36
CCDC88B-208ENST00000492980 ZNF861PO60384 105 aa12.79□□□□□ -0.36
CCDC88B-208ENST00000492980 DEFB116Q30KQ4 102 aa12.79□□□□□ -0.36
CCDC88B-208ENST00000492980 ZNF706Q9Y5V0 76 aaPredicted RBP12.79□□□□□ -0.36
CCDC88B-208ENST00000492980 DNAH5Q8TE73 4624 aa12.78□□□□□ -0.36
CCDC88B-208ENST00000492980 OCR1Q9BZK8 76 aa12.77□□□□□ -0.36
CCDC88B-208ENST00000492980 IGLV9-49A0A0B4J1Y8 123 aa12.76□□□□□ -0.37
CCDC88B-208ENST00000492980 TMEM258P61165 79 aa12.76□□□□□ -0.37
CCDC88B-208ENST00000492980 KLKP1Q107X0 134 aa12.74□□□□□ -0.37
CCDC88B-208ENST00000492980 FAM30AQ9NZY2 134 aa12.73□□□□□ -0.37
CCDC88B-208ENST00000492980 HYDINQ4G0P3 5121 aa12.72□□□□□ -0.37
CCDC88B-208ENST00000492980 LINC00472Q9H8W2 130 aa12.71□□□□□ -0.38
CCDC88B-208ENST00000492980 SNURFQ9Y675 71 aa12.71□□□□□ -0.38
CCDC88B-208ENST00000492980 RPL37AP61513 92 aaKnown RBP12.7□□□□□ -0.38
CCDC88B-208ENST00000492980 IGLV7-43P04211 117 aa12.7□□□□□ -0.38
CCDC88B-208ENST00000492980 CIRBP-AS1Q8TBR5 109 aa12.7□□□□□ -0.38
CCDC88B-208ENST00000492980 HCG22E2RYF7 251 aa12.68□□□□□ -0.38
CCDC88B-208ENST00000492980 FAT2Q9NYQ8 4349 aa12.68□□□□□ -0.38
CCDC88B-208ENST00000492980 PKD1P98161 4303 aa12.68□□□□□ -0.38
CCDC88B-208ENST00000492980 ANAPC11Q9NYG5 84 aa12.68□□□□□ -0.38
CCDC88B-208ENST00000492980 H7BZZ5 65 aa12.66□□□□□ -0.38
CCDC88B-208ENST00000492980 MOBPQ13875 183 aa12.65□□□□□ -0.38
CCDC88B-208ENST00000492980 TMEM254Q8TBM7 123 aa12.65□□□□□ -0.38
CCDC88B-208ENST00000492980 Q6ZSA8 131 aa12.64□□□□□ -0.39
CCDC88B-208ENST00000492980 KRTAP10-1P60331 282 aa12.64□□□□□ -0.39
CCDC88B-208ENST00000492980 A8MWP4 228 aa12.62□□□□□ -0.39
CCDC88B-208ENST00000492980 PRR15Q8IV56 129 aa12.61□□□□□ -0.39
CCDC88B-208ENST00000492980 HRCT1Q6UXD1 115 aa12.61□□□□□ -0.39
CCDC88B-208ENST00000492980 A0A0U1RQV1 116 aa12.59□□□□□ -0.39
CCDC88B-208ENST00000492980 WFDC13Q8IUB5 93 aa12.59□□□□□ -0.39
CCDC88B-208ENST00000492980 SVIPQ8NHG7 77 aa12.58□□□□□ -0.4
CCDC88B-208ENST00000492980 Q96NJ1 140 aa12.58□□□□□ -0.4
CCDC88B-208ENST00000492980 LCE6AA0A183 80 aa12.58□□□□□ -0.4
CCDC88B-208ENST00000492980 J3KT08 172 aa12.58□□□□□ -0.4
CCDC88B-208ENST00000492980 NDUFC1O43677 76 aa12.57□□□□□ -0.4
CCDC88B-208ENST00000492980 KRTAP29-1A8MX34 341 aaPredicted RBP12.56□□□□□ -0.4
CCDC88B-208ENST00000492980 FAM236DA0A1B0GTK5 79 aa12.55□□□□□ -0.4
CCDC88B-208ENST00000492980 FAM236CP0DP71 79 aa12.55□□□□□ -0.4
CCDC88B-208ENST00000492980 RPS28P62857 69 aaKnown RBP12.53□□□□□ -0.4
CCDC88B-208ENST00000492980 CASC2Q6XLA1 102 aa12.52□□□□□ -0.41
CCDC88B-208ENST00000492980 LRP1BQ9NZR2 4599 aa12.49□□□□□ -0.41
CCDC88B-208ENST00000492980 SACSQ9NZJ4 4579 aa12.48□□□□□ -0.41
CCDC88B-208ENST00000492980 NDUFB1O75438 58 aa12.47□□□□□ -0.41
CCDC88B-208ENST00000492980 MMP24-AS1A0A0U1RRL7 71 aa12.47□□□□□ -0.41
CCDC88B-208ENST00000492980 C5orf47Q569G3 176 aa12.46□□□□□ -0.41
CCDC88B-208ENST00000492980 OXTP01178 125 aa12.44□□□□□ -0.42
CCDC88B-208ENST00000492980 ZCCHC13Q8WW36 166 aaKnown RBP12.43□□□□□ -0.42
CCDC88B-208ENST00000492980 SSBP3-AS1Q7Z2R9 100 aa12.42□□□□□ -0.42
CCDC88B-208ENST00000492980 CD164Q04900 197 aa12.4□□□□□ -0.42
CCDC88B-208ENST00000492980 ATP5EP56381 51 aaPredicted RBP12.39□□□□□ -0.43
CCDC88B-208ENST00000492980 hDV103S1A0JD37 113 aa12.38□□□□□ -0.43
CCDC88B-208ENST00000492980 A0A087X002 238 aa12.38□□□□□ -0.43
CCDC88B-208ENST00000492980 A0A1B0GVX0 72 aa12.38□□□□□ -0.43
CCDC88B-208ENST00000492980 ASB16-AS1Q495Z4 193 aa12.37□□□□□ -0.43
CCDC88B-208ENST00000492980 C8orf17Q9NRJ1 99 aa12.37□□□□□ -0.43
CCDC88B-208ENST00000492980 SERP1Q9Y6X1 66 aa12.37□□□□□ -0.43
CCDC88B-208ENST00000492980 KRTAP13-2Q52LG2 175 aa12.35□□□□□ -0.43
CCDC88B-208ENST00000492980 CDK2AP2O75956 126 aa12.35□□□□□ -0.43
CCDC88B-208ENST00000492980 IGHV6-1A0A0B4J1U7 121 aa12.34□□□□□ -0.43
CCDC88B-208ENST00000492980 FAM229BQ4G0N7 80 aa12.34□□□□□ -0.43
CCDC88B-208ENST00000492980 MP68P56378 58 aa12.34□□□□□ -0.43
CCDC88B-208ENST00000492980 LINC00336Q6ZUF6 198 aa12.32□□□□□ -0.44
CCDC88B-208ENST00000492980 VPS13BQ7Z7G8 4022 aa12.32□□□□□ -0.44
CCDC88B-208ENST00000492980 KRTAP1-4P0C5Y4 121 aa12.31□□□□□ -0.44
CCDC88B-208ENST00000492980 H0Y9P7 68 aa12.31□□□□□ -0.44
CCDC88B-208ENST00000492980 PKHD1P08F94 4074 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms