RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 LRRIQ1Q96JM4 1722 aa-0.69□□□□□ -2.52
SCN1A-206ENST00000491429 ABCA8O94911 1581 aa-0.69□□□□□ -2.52
SCN1A-206ENST00000491429 SAMD9Q5K651 1589 aa-0.69□□□□□ -2.52
SCN1A-206ENST00000491429 TRBV7-4A0A0J9YYF1 115 aa-0.69□□□□□ -2.52
SCN1A-206ENST00000491429 LOC285095A0A1B0GVY8 99 aa-0.69□□□□□ -2.52
SCN1A-206ENST00000491429 FAM223BA6NKX1 122 aa-0.69□□□□□ -2.52
SCN1A-206ENST00000491429 SYS1-DBNDD2H3BUS1 97 aa-0.69□□□□□ -2.52
SCN1A-206ENST00000491429 IFNGP01579 166 aa-0.69□□□□□ -2.52
SCN1A-206ENST00000491429 APOC2P02655 101 aa-0.69□□□□□ -2.52
SCN1A-206ENST00000491429 COX8AP10176 69 aa-0.69□□□□□ -2.52
SCN1A-206ENST00000491429 BTG2P78543 158 aa-0.69□□□□□ -2.52
SCN1A-206ENST00000491429 MRPL54Q6P161 138 aaKnown RBP-0.69□□□□□ -2.52
SCN1A-206ENST00000491429 TMEM263Q8WUH6 116 aaKnown RBP-0.69□□□□□ -2.52
SCN1A-206ENST00000491429 DPH3P1Q9H4G8 78 aa-0.69□□□□□ -2.52
SCN1A-206ENST00000491429 POLA1P09884 1462 aaPredicted RBP-0.69□□□□□ -2.52
SCN1A-206ENST00000491429 NALCNQ8IZF0 1738 aa-0.69□□□□□ -2.52
SCN1A-206ENST00000491429 RGPD3A6NKT7 1758 aaPredicted RBP-0.7□□□□□ -2.52
SCN1A-206ENST00000491429 RGPD4Q7Z3J3 1758 aa-0.7□□□□□ -2.52
SCN1A-206ENST00000491429 ABCC5O15440 1437 aa-0.7□□□□□ -2.52
SCN1A-206ENST00000491429 NDUFA2O43678 99 aa-0.7□□□□□ -2.52
SCN1A-206ENST00000491429 UBE2D3P61077 147 aa-0.7□□□□□ -2.52
SCN1A-206ENST00000491429 UBE2D2P62837 147 aa-0.7□□□□□ -2.52
SCN1A-206ENST00000491429 NCBP2-AS2Q69YL0 99 aa-0.7□□□□□ -2.52
SCN1A-206ENST00000491429 DEFB107AQ8IZN7 70 aa-0.7□□□□□ -2.52
SCN1A-206ENST00000491429 ZNF436-AS1Q8NC38 126 aaPredicted RBP-0.7□□□□□ -2.52
SCN1A-206ENST00000491429 ATP7BP35670 1465 aa-0.7□□□□□ -2.52
SCN1A-206ENST00000491429 KIF1AQ12756 1690 aa-0.7□□□□□ -2.52
SCN1A-206ENST00000491429 UGGT2Q9NYU1 1516 aa-0.7□□□□□ -2.52
SCN1A-206ENST00000491429 SCRIBQ14160 1630 aa-0.71□□□□□ -2.52
SCN1A-206ENST00000491429 RICTORQ6R327 1708 aa-0.71□□□□□ -2.52
SCN1A-206ENST00000491429 C9orf92A6NGG3 77 aa-0.71□□□□□ -2.52
SCN1A-206ENST00000491429 CHKB-CPT1BH3BT56 60 aa-0.71□□□□□ -2.52
SCN1A-206ENST00000491429 UBA52P62987 128 aaKnown RBP-0.71□□□□□ -2.52
SCN1A-206ENST00000491429 PRLHP81277 87 aa-0.71□□□□□ -2.52
SCN1A-206ENST00000491429 C8orf59Q8N0T1 100 aaPredicted RBP-0.71□□□□□ -2.52
SCN1A-206ENST00000491429 FAM107BQ9H098 131 aa-0.71□□□□□ -2.52
SCN1A-206ENST00000491429 PSENENQ9NZ42 101 aa-0.71□□□□□ -2.52
SCN1A-206ENST00000491429 ARL2-SNX15V9GYD0 113 aa-0.71□□□□□ -2.52
SCN1A-206ENST00000491429 A0A1B0GUL6 1792 aa-0.71□□□□□ -2.52
SCN1A-206ENST00000491429 ANKRD36A6QL64 1941 aa-0.72□□□□□ -2.52
SCN1A-206ENST00000491429 CLTCQ00610 1675 aaKnown RBP-0.72□□□□□ -2.52
SCN1A-206ENST00000491429 KIAA1551Q9HCM1 1747 aa-0.72□□□□□ -2.52
SCN1A-206ENST00000491429 AGLP35573 1532 aa-0.72□□□□□ -2.52
SCN1A-206ENST00000491429 ZFYVE16Q7Z3T8 1539 aa-0.72□□□□□ -2.52
SCN1A-206ENST00000491429 A0A1B0GU69 56 aa-0.72□□□□□ -2.52
SCN1A-206ENST00000491429 hADV29S1A0JD25 119 aa-0.72□□□□□ -2.52
SCN1A-206ENST00000491429 H7BZZ5 65 aa-0.72□□□□□ -2.52
SCN1A-206ENST00000491429 SSSCA1O60232 199 aa-0.72□□□□□ -2.52
SCN1A-206ENST00000491429 MGPP08493 103 aa-0.72□□□□□ -2.52
SCN1A-206ENST00000491429 IGLC2P0DOY2 106 aa-0.72□□□□□ -2.52
SCN1A-206ENST00000491429 IGLC3P0DOY3 106 aa-0.72□□□□□ -2.52
SCN1A-206ENST00000491429 Q0VG73 95 aa-0.72□□□□□ -2.52
SCN1A-206ENST00000491429 COMMD6Q7Z4G1 85 aa-0.72□□□□□ -2.52
SCN1A-206ENST00000491429 C6orf201Q7Z4U5 140 aa-0.72□□□□□ -2.52
SCN1A-206ENST00000491429 C5orf38Q86SI9 138 aa-0.72□□□□□ -2.52
SCN1A-206ENST00000491429 USMG5Q96IX5 58 aa-0.72□□□□□ -2.52
SCN1A-206ENST00000491429 NXT2Q9NPJ8 142 aaKnown RBP-0.72□□□□□ -2.52
SCN1A-206ENST00000491429 FAIMQ9NVQ4 179 aa-0.72□□□□□ -2.52
SCN1A-206ENST00000491429 HIGD1BQ9P298 99 aa-0.72□□□□□ -2.52
SCN1A-206ENST00000491429 DIP2BQ9P265 1576 aa-0.72□□□□□ -2.52
SCN1A-206ENST00000491429 CLTCL1P53675 1640 aa-0.72□□□□□ -2.52
SCN1A-206ENST00000491429 MROH2AA6NES4 1674 aa-0.72□□□□□ -2.53
SCN1A-206ENST00000491429 CPS1P31327 1500 aa-0.73□□□□□ -2.53
SCN1A-206ENST00000491429 CCDC180Q9P1Z9 1646 aa-0.73□□□□□ -2.53
SCN1A-206ENST00000491429 H0YGG7 62 aa-0.73□□□□□ -2.53
SCN1A-206ENST00000491429 RPS27P42677 84 aaKnown RBP-0.73□□□□□ -2.53
SCN1A-206ENST00000491429 CRIP1P50238 77 aa-0.73□□□□□ -2.53
SCN1A-206ENST00000491429 ALKAL2Q6UX46 152 aa-0.73□□□□□ -2.53
SCN1A-206ENST00000491429 HEPN1Q6WQI6 88 aa-0.73□□□□□ -2.53
SCN1A-206ENST00000491429 RPS27LQ71UM5 84 aaKnown RBP-0.73□□□□□ -2.53
SCN1A-206ENST00000491429 FAM167A-AS1Q96KT0 104 aa-0.73□□□□□ -2.53
SCN1A-206ENST00000491429 TSC22D3Q99576 134 aa-0.73□□□□□ -2.53
SCN1A-206ENST00000491429 TTTY10Q9BZA0 68 aa-0.73□□□□□ -2.53
SCN1A-206ENST00000491429 CDKN2A-AS1Q9UH64 79 aa-0.73□□□□□ -2.53
SCN1A-206ENST00000491429 NAIPQ13075 1403 aa-0.73□□□□□ -2.53
SCN1A-206ENST00000491429 PDCD11Q14690 1871 aaKnown RBP-0.73□□□□□ -2.53
SCN1A-206ENST00000491429 ERICH3Q5RHP9 1530 aa-0.74□□□□□ -2.53
SCN1A-206ENST00000491429 PIK3C2BO00750 1634 aa-0.74□□□□□ -2.53
SCN1A-206ENST00000491429 C7orf77A4D0Y5 90 aa-0.74□□□□□ -2.53
SCN1A-206ENST00000491429 MT-ATP8P03928 68 aa-0.74□□□□□ -2.53
SCN1A-206ENST00000491429 SEC11AP67812 179 aa-0.74□□□□□ -2.53
SCN1A-206ENST00000491429 EDC4Q6P2E9 1401 aaKnown RBP-0.74□□□□□ -2.53
SCN1A-206ENST00000491429 SCAPERQ9BY12 1400 aa-0.74□□□□□ -2.53
SCN1A-206ENST00000491429 ANKRD50Q9ULJ7 1429 aa-0.74□□□□□ -2.53
SCN1A-206ENST00000491429 LRRC9Q6ZRR7 1453 aa-0.74□□□□□ -2.53
SCN1A-206ENST00000491429 IGLV5-48A0A075B6I7 105 aa-0.75□□□□□ -2.53
SCN1A-206ENST00000491429 A0A0G2JND7 137 aa-0.75□□□□□ -2.53
SCN1A-206ENST00000491429 H0Y9P7 68 aa-0.75□□□□□ -2.53
SCN1A-206ENST00000491429 I3L3M4 83 aa-0.75□□□□□ -2.53
SCN1A-206ENST00000491429 HMGA1P17096 107 aaKnown RBP-0.75□□□□□ -2.53
SCN1A-206ENST00000491429 FGF7P21781 194 aa-0.75□□□□□ -2.53
SCN1A-206ENST00000491429 LINC00158P58513 81 aa-0.75□□□□□ -2.53
SCN1A-206ENST00000491429 DEFB106AQ8N104 65 aa-0.75□□□□□ -2.53
SCN1A-206ENST00000491429 DEFB124Q8NES8 71 aa-0.75□□□□□ -2.53
SCN1A-206ENST00000491429 UQCR10Q9UDW1 63 aa-0.75□□□□□ -2.53
SCN1A-206ENST00000491429 A2ML1A8K2U0 1454 aa-0.75□□□□□ -2.53
SCN1A-206ENST00000491429 PZPP20742 1482 aa-0.75□□□□□ -2.53
SCN1A-206ENST00000491429 FYCO1Q9BQS8 1478 aa-0.75□□□□□ -2.53
SCN1A-206ENST00000491429 EPRSP07814 1512 aaKnown RBP-0.75□□□□□ -2.53
SCN1A-206ENST00000491429 TTC37Q6PGP7 1564 aa-0.75□□□□□ -2.53
Retrieved 100 of 20,778 RNA–protein pairs in 443.7 ms