RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 KRTAP9-8Q9BYQ0 159 aa4.31□□□□□ -1.72
SYNE1-229ENST00000490866 RYR2Q92736 4967 aa4.3□□□□□ -1.72
SYNE1-229ENST00000490866 IGLV5-48A0A075B6I7 105 aa4.3□□□□□ -1.72
SYNE1-229ENST00000490866 SPINK6Q6UWN8 80 aa4.3□□□□□ -1.72
SYNE1-229ENST00000490866 NAA38Q9BRA0 125 aaKnown RBP4.3□□□□□ -1.72
SYNE1-229ENST00000490866 F8WEM9 126 aa4.29□□□□□ -1.72
SYNE1-229ENST00000490866 Q6ZQY7 126 aa4.29□□□□□ -1.72
SYNE1-229ENST00000490866 SMCR5Q8TEV8 140 aa4.29□□□□□ -1.72
SYNE1-229ENST00000490866 LAMTOR3Q9UHA4 124 aa4.29□□□□□ -1.72
SYNE1-229ENST00000490866 SPRR1BP22528 89 aa4.28□□□□□ -1.72
SYNE1-229ENST00000490866 RBM3P98179 157 aaKnown RBP4.28□□□□□ -1.72
SYNE1-229ENST00000490866 TEN1Q86WV5 123 aa4.28□□□□□ -1.72
SYNE1-229ENST00000490866 KRTAP13-1Q8IUC0 172 aa4.28□□□□□ -1.72
SYNE1-229ENST00000490866 FAM218AQ96MZ4 157 aa4.28□□□□□ -1.72
SYNE1-229ENST00000490866 DSCR8Q96T75 97 aa4.28□□□□□ -1.72
SYNE1-229ENST00000490866 HIGD2AQ9BW72 106 aa4.28□□□□□ -1.72
SYNE1-229ENST00000490866 PKD1P98161 4303 aa4.28□□□□□ -1.72
SYNE1-229ENST00000490866 FAT2Q9NYQ8 4349 aa4.27□□□□□ -1.73
SYNE1-229ENST00000490866 ACYP1P07311 99 aa4.27□□□□□ -1.73
SYNE1-229ENST00000490866 FUSP35637 526 aaKnown RBP eCLIP4.27□□□□□ -1.73
SYNE1-229ENST00000490866 XGP55808 180 aa4.27□□□□□ -1.73
SYNE1-229ENST00000490866 Q6JHZ5 121 aa4.27□□□□□ -1.73
SYNE1-229ENST00000490866 Q9BRP9 147 aa4.27□□□□□ -1.73
SYNE1-229ENST00000490866 NDUFV3P56181 108 aaKnown RBP4.26□□□□□ -1.73
SYNE1-229ENST00000490866 KRTAP15-1Q3LI76 137 aa4.26□□□□□ -1.73
SYNE1-229ENST00000490866 FAM229BQ4G0N7 80 aa4.26□□□□□ -1.73
SYNE1-229ENST00000490866 PRO0461Q9UI25 63 aa4.26□□□□□ -1.73
SYNE1-229ENST00000490866 PRLHP81277 87 aa4.25□□□□□ -1.73
SYNE1-229ENST00000490866 LINC00483Q53H64 154 aa4.25□□□□□ -1.73
SYNE1-229ENST00000490866 SSBP3-AS1Q7Z2R9 100 aa4.25□□□□□ -1.73
SYNE1-229ENST00000490866 OBSCN-AS1Q96MR7 158 aa4.25□□□□□ -1.73
SYNE1-229ENST00000490866 K7ERU9 68 aa4.24□□□□□ -1.73
SYNE1-229ENST00000490866 Q8N377 158 aa4.24□□□□□ -1.73
SYNE1-229ENST00000490866 DEFB105AQ8NG35 78 aa4.24□□□□□ -1.73
SYNE1-229ENST00000490866 SPRR4Q96PI1 79 aa4.24□□□□□ -1.73
SYNE1-229ENST00000490866 IGLV8-61A0A075B6I0 122 aa4.23□□□□□ -1.73
SYNE1-229ENST00000490866 LOC110117498A0A087WWA1 95 aa4.23□□□□□ -1.73
SYNE1-229ENST00000490866 ETDBQ3ZM63 59 aa4.23□□□□□ -1.73
SYNE1-229ENST00000490866 GAGE2AQ6NT46 116 aa4.23□□□□□ -1.73
SYNE1-229ENST00000490866 KRTAP11-1Q8IUC1 163 aa4.23□□□□□ -1.73
SYNE1-229ENST00000490866 DNAH11Q96DT5 4516 aa4.22□□□□□ -1.73
SYNE1-229ENST00000490866 FAM240AA0A1B0GVK7 77 aa4.22□□□□□ -1.73
SYNE1-229ENST00000490866 CRYGAP11844 174 aa4.22□□□□□ -1.73
SYNE1-229ENST00000490866 PKHD1P08F94 4074 aa4.22□□□□□ -1.73
SYNE1-229ENST00000490866 DNAH5Q8TE73 4624 aa4.21□□□□□ -1.74
SYNE1-229ENST00000490866 RYR3Q15413 4870 aa4.21□□□□□ -1.74
SYNE1-229ENST00000490866 ERC2-IT1O76042 136 aa4.21□□□□□ -1.74
SYNE1-229ENST00000490866 LINC01547P58512 204 aaPredicted RBP4.21□□□□□ -1.74
SYNE1-229ENST00000490866 CD164Q04900 197 aa4.21□□□□□ -1.74
SYNE1-229ENST00000490866 TRBV7-4A0A0J9YYF1 115 aa4.2□□□□□ -1.74
SYNE1-229ENST00000490866 CCKP06307 115 aa4.2□□□□□ -1.74
SYNE1-229ENST00000490866 SPAG11AQ6PDA7 123 aa4.2□□□□□ -1.74
SYNE1-229ENST00000490866 Q6Q795 121 aa4.2□□□□□ -1.74
SYNE1-229ENST00000490866 SMIM29Q86T20 159 aa4.19□□□□□ -1.74
SYNE1-229ENST00000490866 ST20-AS1Q8NBB2 130 aa4.19□□□□□ -1.74
SYNE1-229ENST00000490866 Q8NBF4 154 aa4.19□□□□□ -1.74
SYNE1-229ENST00000490866 SMR3BP02814 79 aaPredicted RBP4.18□□□□□ -1.74
SYNE1-229ENST00000490866 SS18L2Q9UHA2 77 aa4.18□□□□□ -1.74
SYNE1-229ENST00000490866 DNAH8Q96JB1 4490 aa4.18□□□□□ -1.74
SYNE1-229ENST00000490866 SRRM2Q9UQ35 2752 aaKnown RBP4.17□□□□□ -1.74
SYNE1-229ENST00000490866 C9orf153Q5TBE3 101 aa4.17□□□□□ -1.74
SYNE1-229ENST00000490866 Q5VSD8 79 aa4.17□□□□□ -1.74
SYNE1-229ENST00000490866 Q6ZQT0 140 aa4.17□□□□□ -1.74
SYNE1-229ENST00000490866 MTURNQ8N3F0 131 aa4.17□□□□□ -1.74
SYNE1-229ENST00000490866 UBL5Q9BZL1 73 aa4.17□□□□□ -1.74
SYNE1-229ENST00000490866 LRP1BQ9NZR2 4599 aa4.16□□□□□ -1.74
SYNE1-229ENST00000490866 RPS29P62273 56 aaKnown RBP4.16□□□□□ -1.74
SYNE1-229ENST00000490866 C14orf132Q9NPU4 83 aa4.16□□□□□ -1.74
SYNE1-229ENST00000490866 SPINK1P00995 79 aa4.15□□□□□ -1.75
SYNE1-229ENST00000490866 TYMSOSQ8TAI1 123 aa4.15□□□□□ -1.75
SYNE1-229ENST00000490866 VPS13BQ7Z7G8 4022 aa4.15□□□□□ -1.75
SYNE1-229ENST00000490866 IGLV9-49A0A0B4J1Y8 123 aa4.14□□□□□ -1.75
SYNE1-229ENST00000490866 TRBV7-7A0A0K0K1E9 115 aa4.14□□□□□ -1.75
SYNE1-229ENST00000490866 J3KT08 172 aa4.14□□□□□ -1.75
SYNE1-229ENST00000490866 OXTP01178 125 aa4.14□□□□□ -1.75
SYNE1-229ENST00000490866 HAMPP81172 84 aa4.14□□□□□ -1.75
SYNE1-229ENST00000490866 Q5XG85 94 aa4.14□□□□□ -1.75
SYNE1-229ENST00000490866 LIMD2Q9BT23 127 aa4.14□□□□□ -1.75
SYNE1-229ENST00000490866 KRTAP10-4P60372 401 aaPredicted RBP4.13□□□□□ -1.75
SYNE1-229ENST00000490866 NREPQ16612 68 aa4.13□□□□□ -1.75
SYNE1-229ENST00000490866 ATP5EP2Q5VTU8 51 aa4.13□□□□□ -1.75
SYNE1-229ENST00000490866 IGFL1Q6UW32 110 aa4.13□□□□□ -1.75
SYNE1-229ENST00000490866 DYNC1H1Q14204 4646 aaKnown RBP4.13□□□□□ -1.75
SYNE1-229ENST00000490866 KRTAP1-4P0C5Y4 121 aa4.12□□□□□ -1.75
SYNE1-229ENST00000490866 MOBPQ13875 183 aa4.12□□□□□ -1.75
SYNE1-229ENST00000490866 ASB16-AS1Q495Z4 193 aa4.12□□□□□ -1.75
SYNE1-229ENST00000490866 LINC00643Q86TS7 51 aa4.12□□□□□ -1.75
SYNE1-229ENST00000490866 C3orf22Q8N5N4 141 aa4.12□□□□□ -1.75
SYNE1-229ENST00000490866 VPS25Q9BRG1 176 aa4.12□□□□□ -1.75
SYNE1-229ENST00000490866 CXCL6P80162 114 aa4.1□□□□□ -1.75
SYNE1-229ENST00000490866 IMUPQ9GZP8 106 aa4.1□□□□□ -1.75
SYNE1-229ENST00000490866 A0A1W2PNM2 257 aa4.09□□□□□ -1.75
SYNE1-229ENST00000490866 NDUFB1O75438 58 aa4.09□□□□□ -1.75
SYNE1-229ENST00000490866 LINC00304Q8N9R0 145 aa4.09□□□□□ -1.75
SYNE1-229ENST00000490866 SIGMAR1Q99720 223 aa4.09□□□□□ -1.75
SYNE1-229ENST00000490866 APOBP04114 4563 aaKnown RBP4.08□□□□□ -1.76
SYNE1-229ENST00000490866 A0A087X002 238 aa4.08□□□□□ -1.76
SYNE1-229ENST00000490866 A0A087WSZ3 146 aa4.07□□□□□ -1.76
SYNE1-229ENST00000490866 A0A1B0GV72 72 aa4.07□□□□□ -1.76
SYNE1-229ENST00000490866 BPY2O14599 106 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms