RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 SMR3BP02814 79 aaPredicted RBP13.11□□□□□ -0.31
SMC4-221ENST00000489573 J3QR89 54 aa13.11□□□□□ -0.31
SMC4-221ENST00000489573 SMIM29Q86T20 159 aa13.11□□□□□ -0.31
SMC4-221ENST00000489573 K7ERU9 68 aa13.09□□□□□ -0.31
SMC4-221ENST00000489573 APOBP04114 4563 aaKnown RBP13.08□□□□□ -0.32
SMC4-221ENST00000489573 LINC00483Q53H64 154 aa13.07□□□□□ -0.32
SMC4-221ENST00000489573 DSCR8Q96T75 97 aa13.07□□□□□ -0.32
SMC4-221ENST00000489573 F8WEM9 126 aa13.06□□□□□ -0.32
SMC4-221ENST00000489573 CDK2AP2O75956 126 aa13.06□□□□□ -0.32
SMC4-221ENST00000489573 LOC110117498A0A087WWA1 95 aa13.04□□□□□ -0.32
SMC4-221ENST00000489573 TRBV7-4A0A0J9YYF1 115 aa13.03□□□□□ -0.32
SMC4-221ENST00000489573 KRTAP17-1Q9BYP8 105 aa13.03□□□□□ -0.32
SMC4-221ENST00000489573 PDE6GP18545 87 aa13.02□□□□□ -0.33
SMC4-221ENST00000489573 Q6ZQT0 140 aa13.01□□□□□ -0.33
SMC4-221ENST00000489573 CCKP06307 115 aa12.99□□□□□ -0.33
SMC4-221ENST00000489573 IGLV8-61A0A075B6I0 122 aa12.98□□□□□ -0.33
SMC4-221ENST00000489573 KRTAP10-4P60372 401 aaPredicted RBP12.97□□□□□ -0.33
SMC4-221ENST00000489573 SPINK6Q6UWN8 80 aa12.97□□□□□ -0.33
SMC4-221ENST00000489573 ANAPC11Q9NYG5 84 aa12.97□□□□□ -0.33
SMC4-221ENST00000489573 PCLOQ9Y6V0 5065 aa12.97□□□□□ -0.33
SMC4-221ENST00000489573 C21orf62-AS1Q17RA5 79 aa12.96□□□□□ -0.33
SMC4-221ENST00000489573 FAM240AA0A1B0GVK7 77 aa12.95□□□□□ -0.34
SMC4-221ENST00000489573 IGLV9-49A0A0B4J1Y8 123 aa12.94□□□□□ -0.34
SMC4-221ENST00000489573 VPS25Q9BRG1 176 aa12.93□□□□□ -0.34
SMC4-221ENST00000489573 SRRM2Q9UQ35 2752 aaKnown RBP12.92□□□□□ -0.34
SMC4-221ENST00000489573 FAM229AH3BQW9 127 aa12.92□□□□□ -0.34
SMC4-221ENST00000489573 PLA2G1BP04054 148 aaKnown RBP12.92□□□□□ -0.34
SMC4-221ENST00000489573 ACYP1P07311 99 aa12.92□□□□□ -0.34
SMC4-221ENST00000489573 C9orf153Q5TBE3 101 aa12.92□□□□□ -0.34
SMC4-221ENST00000489573 Q6JHZ5 121 aa12.92□□□□□ -0.34
SMC4-221ENST00000489573 IGFL1Q6UW32 110 aa12.92□□□□□ -0.34
SMC4-221ENST00000489573 VPS13BQ7Z7G8 4022 aa12.91□□□□□ -0.34
SMC4-221ENST00000489573 RYR1P21817 5038 aa12.91□□□□□ -0.34
SMC4-221ENST00000489573 KRTAP1-4P0C5Y4 121 aa12.88□□□□□ -0.35
SMC4-221ENST00000489573 FAM229BQ4G0N7 80 aa12.88□□□□□ -0.35
SMC4-221ENST00000489573 Q8NBF4 154 aa12.88□□□□□ -0.35
SMC4-221ENST00000489573 A0A1W2PNM2 257 aa12.87□□□□□ -0.35
SMC4-221ENST00000489573 MOBPQ13875 183 aa12.87□□□□□ -0.35
SMC4-221ENST00000489573 A0A0G2JQZ4 141 aa12.86□□□□□ -0.35
SMC4-221ENST00000489573 Q5VSD8 79 aa12.86□□□□□ -0.35
SMC4-221ENST00000489573 FAT1Q14517 4588 aa12.84□□□□□ -0.35
SMC4-221ENST00000489573 HSPG2P98160 4391 aa12.84□□□□□ -0.35
SMC4-221ENST00000489573 ABCA13Q86UQ4 5058 aa12.82□□□□□ -0.36
SMC4-221ENST00000489573 A0A087X002 238 aa12.82□□□□□ -0.36
SMC4-221ENST00000489573 CDIP1Q9H305 208 aa12.82□□□□□ -0.36
SMC4-221ENST00000489573 LINC00846Q9NV44 126 aa12.82□□□□□ -0.36
SMC4-221ENST00000489573 CRYGAP11844 174 aa12.81□□□□□ -0.36
SMC4-221ENST00000489573 A0A1B0GW54 56 aa12.8□□□□□ -0.36
SMC4-221ENST00000489573 KRTAP13-2Q52LG2 175 aa12.78□□□□□ -0.36
SMC4-221ENST00000489573 Q6Q795 121 aa12.78□□□□□ -0.36
SMC4-221ENST00000489573 SSBP3-AS1Q7Z2R9 100 aa12.77□□□□□ -0.36
SMC4-221ENST00000489573 KRTAP4-5Q9BYR2 181 aa12.77□□□□□ -0.37
SMC4-221ENST00000489573 Q8N1X5 172 aa12.76□□□□□ -0.37
SMC4-221ENST00000489573 UBL5Q9BZL1 73 aa12.74□□□□□ -0.37
SMC4-221ENST00000489573 A0A087WSZ3 146 aa12.7□□□□□ -0.38
SMC4-221ENST00000489573 Q6ZVQ6 151 aa12.7□□□□□ -0.38
SMC4-221ENST00000489573 TRBV7-7A0A0K0K1E9 115 aa12.69□□□□□ -0.38
SMC4-221ENST00000489573 HRCT1Q6UXD1 115 aa12.69□□□□□ -0.38
SMC4-221ENST00000489573 LINC00643Q86TS7 51 aa12.69□□□□□ -0.38
SMC4-221ENST00000489573 PRR26Q8N8Z3 221 aa12.69□□□□□ -0.38
SMC4-221ENST00000489573 TYMSOSQ8TAI1 123 aa12.69□□□□□ -0.38
SMC4-221ENST00000489573 CD164Q04900 197 aa12.66□□□□□ -0.38
SMC4-221ENST00000489573 NREPQ16612 68 aa12.66□□□□□ -0.38
SMC4-221ENST00000489573 PKHD1L1Q86WI1 4243 aa12.63□□□□□ -0.39
SMC4-221ENST00000489573 MT-ATP8P03928 68 aa12.61□□□□□ -0.39
SMC4-221ENST00000489573 ATP5EP2Q5VTU8 51 aa12.6□□□□□ -0.39
SMC4-221ENST00000489573 SIGMAR1Q99720 223 aa12.6□□□□□ -0.39
SMC4-221ENST00000489573 SS18L2Q9UHA2 77 aa12.6□□□□□ -0.39
SMC4-221ENST00000489573 IGKV3D-7A0A0C4DH55 119 aa12.56□□□□□ -0.4
SMC4-221ENST00000489573 C4orf48Q5BLP8 95 aa12.55□□□□□ -0.4
SMC4-221ENST00000489573 LINC00304Q8N9R0 145 aa12.54□□□□□ -0.4
SMC4-221ENST00000489573 BPY2O14599 106 aa12.53□□□□□ -0.4
SMC4-221ENST00000489573 CXCL6P80162 114 aa12.53□□□□□ -0.4
SMC4-221ENST00000489573 SPAG11AQ6PDA7 123 aa12.51□□□□□ -0.41
SMC4-221ENST00000489573 LINC00472Q9H8W2 130 aa12.51□□□□□ -0.41
SMC4-221ENST00000489573 SPINK1P00995 79 aa12.5□□□□□ -0.41
SMC4-221ENST00000489573 Q5XG85 94 aa12.49□□□□□ -0.41
SMC4-221ENST00000489573 LIMD2Q9BT23 127 aa12.48□□□□□ -0.41
SMC4-221ENST00000489573 DEFB116Q30KQ4 102 aa12.47□□□□□ -0.41
SMC4-221ENST00000489573 Q96NJ1 140 aa12.47□□□□□ -0.41
SMC4-221ENST00000489573 ASB16-AS1Q495Z4 193 aa12.46□□□□□ -0.42
SMC4-221ENST00000489573 KRTAP10-8P60410 259 aa12.45□□□□□ -0.42
SMC4-221ENST00000489573 RPS29P62273 56 aaKnown RBP12.45□□□□□ -0.42
SMC4-221ENST00000489573 KRTAP3-3Q9BYR6 98 aa12.45□□□□□ -0.42
SMC4-221ENST00000489573 KRTAP3-2Q9BYR7 98 aa12.45□□□□□ -0.42
SMC4-221ENST00000489573 IMUPQ9GZP8 106 aa12.45□□□□□ -0.42
SMC4-221ENST00000489573 J3KT08 172 aa12.43□□□□□ -0.42
SMC4-221ENST00000489573 DSCR10P59022 87 aa12.42□□□□□ -0.42
SMC4-221ENST00000489573 HIST1H4AP62805 103 aaKnown RBP12.42□□□□□ -0.42
SMC4-221ENST00000489573 IGKV4-1P06312 121 aa12.39□□□□□ -0.43
SMC4-221ENST00000489573 Q8N9L7 120 aa12.39□□□□□ -0.43
SMC4-221ENST00000489573 HERC1Q15751 4861 aa12.36□□□□□ -0.43
SMC4-221ENST00000489573 A8MWP4 228 aa12.35□□□□□ -0.43
SMC4-221ENST00000489573 K7EQZ3 153 aa12.35□□□□□ -0.43
SMC4-221ENST00000489573 C1orf195Q5TG92 126 aa12.35□□□□□ -0.43
SMC4-221ENST00000489573 A0A087WVE0 104 aa12.35□□□□□ -0.43
SMC4-221ENST00000489573 OXTP01178 125 aa12.35□□□□□ -0.43
SMC4-221ENST00000489573 FLG2Q5D862 2391 aaPredicted RBP12.34□□□□□ -0.43
SMC4-221ENST00000489573 LRP1Q07954 4544 aaKnown RBP12.33□□□□□ -0.44
SMC4-221ENST00000489573 MT1HL1P0DM35 61 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms