RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 TCL1BO95988 128 aa12.42□□□□□ -0.42
COL9A3-213ENST00000489045 COX8AP10176 69 aa12.42□□□□□ -0.42
COL9A3-213ENST00000489045 BVES-AS1Q5T3Y7 98 aa12.39□□□□□ -0.43
COL9A3-213ENST00000489045 LCE2CQ5TA81 110 aa12.39□□□□□ -0.43
COL9A3-213ENST00000489045 Q6JHZ5 121 aa12.38□□□□□ -0.43
COL9A3-213ENST00000489045 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.37□□□□□ -0.43
COL9A3-213ENST00000489045 CLEC2BQ92478 149 aa12.37□□□□□ -0.43
COL9A3-213ENST00000489045 DLEU1O43261 78 aa12.36□□□□□ -0.43
COL9A3-213ENST00000489045 KRTAP19-2Q3LHN2 52 aa12.36□□□□□ -0.43
COL9A3-213ENST00000489045 IGFL1Q6UW32 110 aa12.36□□□□□ -0.43
COL9A3-213ENST00000489045 OCIAD2Q56VL3 154 aa12.35□□□□□ -0.43
COL9A3-213ENST00000489045 TRBV7-7A0A0K0K1E9 115 aa12.33□□□□□ -0.44
COL9A3-213ENST00000489045 RPL37P61927 97 aaKnown RBP12.33□□□□□ -0.44
COL9A3-213ENST00000489045 PPDPFLQ8WWR9 84 aa12.32□□□□□ -0.44
COL9A3-213ENST00000489045 C14orf144Q96I85 54 aa12.32□□□□□ -0.44
COL9A3-213ENST00000489045 CFC1BP0CG36 223 aa12.31□□□□□ -0.44
COL9A3-213ENST00000489045 CFC1P0CG37 223 aa12.31□□□□□ -0.44
COL9A3-213ENST00000489045 SNHG12Q9BXW3 62 aa12.29□□□□□ -0.44
COL9A3-213ENST00000489045 PAM16Q9Y3D7 125 aa12.29□□□□□ -0.44
COL9A3-213ENST00000489045 SPATA45Q537H7 98 aa12.28□□□□□ -0.44
COL9A3-213ENST00000489045 RAB37Q96AX2 223 aa12.28□□□□□ -0.44
COL9A3-213ENST00000489045 HIGD1BQ9P298 99 aa12.27□□□□□ -0.45
COL9A3-213ENST00000489045 H3BUT2 72 aa12.26□□□□□ -0.45
COL9A3-213ENST00000489045 A0A0B4J2C4 111 aa12.24□□□□□ -0.45
COL9A3-213ENST00000489045 MT1HP80294 61 aa12.24□□□□□ -0.45
COL9A3-213ENST00000489045 C2orf91Q6ZV80 131 aa12.24□□□□□ -0.45
COL9A3-213ENST00000489045 VAMP8Q9BV40 100 aa12.23□□□□□ -0.45
COL9A3-213ENST00000489045 KRTAP9-6A0A140TA67 174 aa12.22□□□□□ -0.45
COL9A3-213ENST00000489045 FAM218AQ96MZ4 157 aa12.21□□□□□ -0.45
COL9A3-213ENST00000489045 H0YGX0 51 aa12.2□□□□□ -0.46
COL9A3-213ENST00000489045 SNCGO76070 127 aa12.19□□□□□ -0.46
COL9A3-213ENST00000489045 LCE2DQ5TA82 110 aaPredicted RBP12.18□□□□□ -0.46
COL9A3-213ENST00000489045 CEND1Q8N111 149 aa12.17□□□□□ -0.46
COL9A3-213ENST00000489045 OBSCN-AS1Q96MR7 158 aa12.17□□□□□ -0.46
COL9A3-213ENST00000489045 LST1O00453 97 aa12.16□□□□□ -0.46
COL9A3-213ENST00000489045 NDUFV3P56181 108 aaKnown RBP12.14□□□□□ -0.47
COL9A3-213ENST00000489045 Q6Q795 121 aa12.13□□□□□ -0.47
COL9A3-213ENST00000489045 PRO1854Q9UHT4 67 aa12.13□□□□□ -0.47
COL9A3-213ENST00000489045 TMEM238LA0A1B0GVL6 79 aa12.12□□□□□ -0.47
COL9A3-213ENST00000489045 A6NJY4 79 aa12.12□□□□□ -0.47
COL9A3-213ENST00000489045 SS18L2Q9UHA2 77 aa12.12□□□□□ -0.47
COL9A3-213ENST00000489045 FXYD2P54710 66 aa12.11□□□□□ -0.47
COL9A3-213ENST00000489045 TEN1Q86WV5 123 aa12.1□□□□□ -0.47
COL9A3-213ENST00000489045 A0A1B0GX51 115 aa12.09□□□□□ -0.47
COL9A3-213ENST00000489045 COX6B2Q6YFQ2 88 aa12.09□□□□□ -0.47
COL9A3-213ENST00000489045 Q75L30 129 aa12.09□□□□□ -0.47
COL9A3-213ENST00000489045 H3BMG7 143 aa12.07□□□□□ -0.48
COL9A3-213ENST00000489045 TRIAP1O43715 76 aa12.06□□□□□ -0.48
COL9A3-213ENST00000489045 GHRHP01286 108 aa12.06□□□□□ -0.48
COL9A3-213ENST00000489045 FABP2P12104 132 aa12.06□□□□□ -0.48
COL9A3-213ENST00000489045 ATP11AUNQ6ZP68 121 aa12.06□□□□□ -0.48
COL9A3-213ENST00000489045 A0A087WSZ3 146 aa12.05□□□□□ -0.48
COL9A3-213ENST00000489045 Q96NJ1 140 aa12.04□□□□□ -0.48
COL9A3-213ENST00000489045 LORP23490 312 aaPredicted RBP12.02□□□□□ -0.49
COL9A3-213ENST00000489045 KRTAP10-6P60371 365 aaPredicted RBP12.02□□□□□ -0.49
COL9A3-213ENST00000489045 M0R2T5 61 aa12.01□□□□□ -0.49
COL9A3-213ENST00000489045 PYY3Q5JQD4 70 aa12□□□□□ -0.49
COL9A3-213ENST00000489045 HSD52Q0P140 79 aa11.99□□□□□ -0.49
COL9A3-213ENST00000489045 FLGP20930 4061 aaPredicted RBP11.99□□□□□ -0.49
COL9A3-213ENST00000489045 A0A1W2PNM2 257 aa11.97□□□□□ -0.49
COL9A3-213ENST00000489045 K7ERJ3 54 aa11.97□□□□□ -0.49
COL9A3-213ENST00000489045 FSIP2Q5CZC0 6907 aa11.95□□□□□ -0.5
COL9A3-213ENST00000489045 DNAL4O96015 105 aa11.95□□□□□ -0.5
COL9A3-213ENST00000489045 PSMB2P49721 201 aa11.95□□□□□ -0.5
COL9A3-213ENST00000489045 C20orf166-AS1Q96NR2 134 aa11.95□□□□□ -0.5
COL9A3-213ENST00000489045 ORMDL1Q9P0S3 153 aa11.94□□□□□ -0.5
COL9A3-213ENST00000489045 A0A1B0GV72 72 aa11.93□□□□□ -0.5
COL9A3-213ENST00000489045 A8MUU9 505 aa11.93□□□□□ -0.5
COL9A3-213ENST00000489045 DSCR10P59022 87 aa11.91□□□□□ -0.5
COL9A3-213ENST00000489045 ANKRD29Q8N6D5 301 aa11.91□□□□□ -0.5
COL9A3-213ENST00000489045 SIGMAR1Q99720 223 aa11.91□□□□□ -0.5
COL9A3-213ENST00000489045 CRCT1Q9UGL9 99 aa11.91□□□□□ -0.5
COL9A3-213ENST00000489045 H3BQ85 93 aa11.89□□□□□ -0.51
COL9A3-213ENST00000489045 COX6CP09669 75 aa11.88□□□□□ -0.51
COL9A3-213ENST00000489045 TRBV7-4A0A0J9YYF1 115 aa11.87□□□□□ -0.51
COL9A3-213ENST00000489045 TMEM256-PLSCR3K7ERE1 68 aa11.86□□□□□ -0.51
COL9A3-213ENST00000489045 UQCR10Q9UDW1 63 aa11.85□□□□□ -0.51
COL9A3-213ENST00000489045 IGKV4-1P06312 121 aa11.83□□□□□ -0.52
COL9A3-213ENST00000489045 TMA7Q9Y2S6 64 aaKnown RBP11.82□□□□□ -0.52
COL9A3-213ENST00000489045 CCKP06307 115 aa11.81□□□□□ -0.52
COL9A3-213ENST00000489045 LINC00313P59037 77 aa11.81□□□□□ -0.52
COL9A3-213ENST00000489045 UBE2V1Q13404 147 aa11.79□□□□□ -0.52
COL9A3-213ENST00000489045 TRACP01848 142 aa11.78□□□□□ -0.52
COL9A3-213ENST00000489045 DEFB116Q30KQ4 102 aa11.77□□□□□ -0.53
COL9A3-213ENST00000489045 KRTAP16-1A8MUX0 517 aa11.76□□□□□ -0.53
COL9A3-213ENST00000489045 LINC00472Q9H8W2 130 aa11.76□□□□□ -0.53
COL9A3-213ENST00000489045 TRBV20-1A0A075B6N2 111 aa11.74□□□□□ -0.53
COL9A3-213ENST00000489045 SCGB1C2P0DMR2 95 aa11.74□□□□□ -0.53
COL9A3-213ENST00000489045 NOTCH2NLQ7Z3S9 236 aa11.74□□□□□ -0.53
COL9A3-213ENST00000489045 VPS25Q9BRG1 176 aa11.71□□□□□ -0.53
COL9A3-213ENST00000489045 IGHV6-1A0A0B4J1U7 121 aa11.69□□□□□ -0.54
COL9A3-213ENST00000489045 RBM3P98179 157 aaKnown RBP11.69□□□□□ -0.54
COL9A3-213ENST00000489045 DSCR8Q96T75 97 aa11.66□□□□□ -0.54
COL9A3-213ENST00000489045 BAALC-AS2P0C853 105 aa11.63□□□□□ -0.55
COL9A3-213ENST00000489045 A0A1B0GVX0 72 aa11.61□□□□□ -0.55
COL9A3-213ENST00000489045 C8orf87E5RJ46 101 aa11.6□□□□□ -0.55
COL9A3-213ENST00000489045 C9JAW5 83 aa11.59□□□□□ -0.55
COL9A3-213ENST00000489045 FAM236DA0A1B0GTK5 79 aa11.58□□□□□ -0.56
COL9A3-213ENST00000489045 FAM236CP0DP71 79 aa11.58□□□□□ -0.56
COL9A3-213ENST00000489045 HRES1P13985 223 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 164.2 ms