RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 LINC00518Q8N0U6 118 aa4.53□□□□□ -1.68
COL17A1-207ENST00000488320 CHCHD1Q96BP2 118 aaKnown RBP4.53□□□□□ -1.68
COL17A1-207ENST00000488320 PLNP26678 52 aa4.52□□□□□ -1.69
COL17A1-207ENST00000488320 Q6ZVH6 145 aa4.52□□□□□ -1.69
COL17A1-207ENST00000488320 TMEM238LA0A1B0GVL6 79 aa4.5□□□□□ -1.69
COL17A1-207ENST00000488320 TMEM218A2RU14 115 aa4.5□□□□□ -1.69
COL17A1-207ENST00000488320 DPM2O94777 84 aa4.5□□□□□ -1.69
COL17A1-207ENST00000488320 Q6JHZ5 121 aa4.5□□□□□ -1.69
COL17A1-207ENST00000488320 SLC7A5P1Q8MH63 180 aa4.5□□□□□ -1.69
COL17A1-207ENST00000488320 MTURNQ8N3F0 131 aa4.5□□□□□ -1.69
COL17A1-207ENST00000488320 NHP2Q9NX24 153 aaKnown RBP4.5□□□□□ -1.69
COL17A1-207ENST00000488320 HSBP1O75506 76 aa4.49□□□□□ -1.69
COL17A1-207ENST00000488320 HRES1P13985 223 aa4.49□□□□□ -1.69
COL17A1-207ENST00000488320 LINC00310P59036 64 aa4.49□□□□□ -1.69
COL17A1-207ENST00000488320 Q8N9P0 234 aaPredicted RBP4.49□□□□□ -1.69
COL17A1-207ENST00000488320 CLEC2BQ92478 149 aa4.49□□□□□ -1.69
COL17A1-207ENST00000488320 PMCHL2Q9BQD1 86 aa4.49□□□□□ -1.69
COL17A1-207ENST00000488320 A4D1N5 150 aa4.48□□□□□ -1.69
COL17A1-207ENST00000488320 KRTAP16-1A8MUX0 517 aa4.48□□□□□ -1.69
COL17A1-207ENST00000488320 LEPROTL1O95214 131 aa4.48□□□□□ -1.69
COL17A1-207ENST00000488320 IGKCP01834 107 aa4.48□□□□□ -1.69
COL17A1-207ENST00000488320 MPLKIPQ8TAP9 179 aa4.48□□□□□ -1.69
COL17A1-207ENST00000488320 TRAV13-2A0A0B4J235 113 aa4.47□□□□□ -1.69
COL17A1-207ENST00000488320 A6NDN8 102 aa4.47□□□□□ -1.69
COL17A1-207ENST00000488320 A8MWP4 228 aa4.47□□□□□ -1.69
COL17A1-207ENST00000488320 SERF1AO75920 110 aa4.47□□□□□ -1.69
COL17A1-207ENST00000488320 ZNF815PA8K554 130 aa4.46□□□□□ -1.7
COL17A1-207ENST00000488320 DSCR10P59022 87 aa4.46□□□□□ -1.7
COL17A1-207ENST00000488320 LITAFQ99732 161 aa4.46□□□□□ -1.7
COL17A1-207ENST00000488320 E9PLD3 99 aa4.45□□□□□ -1.7
COL17A1-207ENST00000488320 TIMM17BO60830 172 aa4.45□□□□□ -1.7
COL17A1-207ENST00000488320 OCIAD2Q56VL3 154 aa4.45□□□□□ -1.7
COL17A1-207ENST00000488320 UQCC3Q6UW78 93 aa4.45□□□□□ -1.7
COL17A1-207ENST00000488320 H3BS24 57 aa4.44□□□□□ -1.7
COL17A1-207ENST00000488320 NOTCH2NLQ7Z3S9 236 aa4.44□□□□□ -1.7
COL17A1-207ENST00000488320 SS18L2Q9UHA2 77 aa4.44□□□□□ -1.7
COL17A1-207ENST00000488320 FABP4P15090 132 aa4.43□□□□□ -1.7
COL17A1-207ENST00000488320 HSPB8Q9UJY1 196 aa4.43□□□□□ -1.7
COL17A1-207ENST00000488320 KRTAP5-3Q6L8H2 238 aa4.42□□□□□ -1.7
COL17A1-207ENST00000488320 KRTAP2-3P0C7H8 128 aa4.41□□□□□ -1.7
COL17A1-207ENST00000488320 LINC00313P59037 77 aa4.41□□□□□ -1.7
COL17A1-207ENST00000488320 VAMP3Q15836 100 aa4.41□□□□□ -1.7
COL17A1-207ENST00000488320 ANKRD39Q53RE8 183 aa4.41□□□□□ -1.7
COL17A1-207ENST00000488320 CLLU1Q5K131 121 aa4.41□□□□□ -1.7
COL17A1-207ENST00000488320 Q6ZQY7 126 aa4.41□□□□□ -1.7
COL17A1-207ENST00000488320 KRTAP2-4Q9BYR9 128 aa4.41□□□□□ -1.7
COL17A1-207ENST00000488320 MDN1Q9NU22 5596 aa4.41□□□□□ -1.7
COL17A1-207ENST00000488320 A6NN06 94 aa4.4□□□□□ -1.71
COL17A1-207ENST00000488320 COPS9Q8WXC6 57 aa4.4□□□□□ -1.71
COL17A1-207ENST00000488320 SNHG12Q9BXW3 62 aa4.4□□□□□ -1.71
COL17A1-207ENST00000488320 hADV29S1A0JD25 119 aa4.39□□□□□ -1.71
COL17A1-207ENST00000488320 SMIM11BQ8TCY0 68 aa4.39□□□□□ -1.71
COL17A1-207ENST00000488320 H3BUT2 72 aa4.38□□□□□ -1.71
COL17A1-207ENST00000488320 LINC00575Q6W349 94 aa4.38□□□□□ -1.71
COL17A1-207ENST00000488320 SIGMAR1Q99720 223 aa4.38□□□□□ -1.71
COL17A1-207ENST00000488320 COLCA2A8K830 154 aa4.37□□□□□ -1.71
COL17A1-207ENST00000488320 SCGB1D1O95968 90 aa4.37□□□□□ -1.71
COL17A1-207ENST00000488320 IFITM1P13164 125 aa4.36□□□□□ -1.71
COL17A1-207ENST00000488320 SCGB1D4Q6XE38 83 aa4.36□□□□□ -1.71
COL17A1-207ENST00000488320 TTTY13Q9BZ97 58 aa4.36□□□□□ -1.71
COL17A1-207ENST00000488320 A0A087WSZ3 146 aa4.35□□□□□ -1.71
COL17A1-207ENST00000488320 TEN1Q86WV5 123 aa4.35□□□□□ -1.71
COL17A1-207ENST00000488320 MUSTN1Q8IVN3 82 aa4.35□□□□□ -1.71
COL17A1-207ENST00000488320 KMT2DO14686 5537 aa4.34□□□□□ -1.71
COL17A1-207ENST00000488320 KRTAP5-9P26371 169 aa4.34□□□□□ -1.71
COL17A1-207ENST00000488320 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.33□□□□□ -1.72
COL17A1-207ENST00000488320 PPDPFLQ8WWR9 84 aa4.33□□□□□ -1.72
COL17A1-207ENST00000488320 IGKV4-1P06312 121 aa4.32□□□□□ -1.72
COL17A1-207ENST00000488320 SPINK7P58062 85 aa4.32□□□□□ -1.72
COL17A1-207ENST00000488320 APOC3P02656 99 aa4.31□□□□□ -1.72
COL17A1-207ENST00000488320 SNAPINO95295 136 aa4.3□□□□□ -1.72
COL17A1-207ENST00000488320 TRGC2P03986 189 aa4.3□□□□□ -1.72
COL17A1-207ENST00000488320 SYS1-DBNDD2H3BUS1 97 aa4.29□□□□□ -1.72
COL17A1-207ENST00000488320 IGHV6-1A0A0B4J1U7 121 aa4.28□□□□□ -1.72
COL17A1-207ENST00000488320 A0A1W2PNM2 257 aa4.28□□□□□ -1.72
COL17A1-207ENST00000488320 WFDC13Q8IUB5 93 aa4.28□□□□□ -1.72
COL17A1-207ENST00000488320 C12orf57Q99622 126 aa4.28□□□□□ -1.72
COL17A1-207ENST00000488320 NDUFA5Q16718 116 aa4.27□□□□□ -1.73
COL17A1-207ENST00000488320 SVBPQ8N300 66 aa4.27□□□□□ -1.73
COL17A1-207ENST00000488320 ZCCHC13Q8WW36 166 aaKnown RBP4.27□□□□□ -1.73
COL17A1-207ENST00000488320 YPEL4Q96NS1 127 aa4.27□□□□□ -1.73
COL17A1-207ENST00000488320 NDUFV3P56181 108 aaKnown RBP4.26□□□□□ -1.73
COL17A1-207ENST00000488320 DEFB116Q30KQ4 102 aa4.26□□□□□ -1.73
COL17A1-207ENST00000488320 LINC01545Q5VT33 79 aa4.26□□□□□ -1.73
COL17A1-207ENST00000488320 FAM218AQ96MZ4 157 aa4.26□□□□□ -1.73
COL17A1-207ENST00000488320 Q5VV11 94 aa4.25□□□□□ -1.73
COL17A1-207ENST00000488320 KRTAP2-2Q9BYT5 123 aa4.25□□□□□ -1.73
COL17A1-207ENST00000488320 KRTAP2-1Q9BYU5 128 aa4.25□□□□□ -1.73
COL17A1-207ENST00000488320 H3BMG7 143 aa4.24□□□□□ -1.73
COL17A1-207ENST00000488320 BVES-AS1Q5T3Y7 98 aa4.24□□□□□ -1.73
COL17A1-207ENST00000488320 PET117Q6UWS5 81 aa4.24□□□□□ -1.73
COL17A1-207ENST00000488320 SNCGO76070 127 aa4.23□□□□□ -1.73
COL17A1-207ENST00000488320 C3orf79P0CE67 100 aa4.22□□□□□ -1.73
COL17A1-207ENST00000488320 SPRR2EP22531 72 aa4.22□□□□□ -1.73
COL17A1-207ENST00000488320 SPRR2BP35325 72 aa4.22□□□□□ -1.73
COL17A1-207ENST00000488320 SPRR2AP35326 72 aa4.22□□□□□ -1.73
COL17A1-207ENST00000488320 KRTAP10-5P60370 271 aa4.22□□□□□ -1.73
COL17A1-207ENST00000488320 H1FX-AS1Q4G0G2 97 aa4.22□□□□□ -1.73
COL17A1-207ENST00000488320 LYRM7Q5U5X0 104 aa4.22□□□□□ -1.73
COL17A1-207ENST00000488320 C8orf87E5RJ46 101 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms