RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 Q8N377 158 aa7.13□□□□□ -1.27
HDAC6-228ENST00000486227 CD164Q04900 197 aa7.13□□□□□ -1.27
HDAC6-228ENST00000486227 HIVEP1P15822 2718 aa7.13□□□□□ -1.27
HDAC6-228ENST00000486227 FP248Q71RG6 208 aaPredicted RBP7.12□□□□□ -1.27
HDAC6-228ENST00000486227 ASH1LQ9NR48 2969 aaKnown RBP7.12□□□□□ -1.27
HDAC6-228ENST00000486227 SPAG11AQ6PDA7 123 aa7.11□□□□□ -1.27
HDAC6-228ENST00000486227 PRR15Q8IV56 129 aa7.11□□□□□ -1.27
HDAC6-228ENST00000486227 A0A1W2PNN7 141 aa7.1□□□□□ -1.27
HDAC6-228ENST00000486227 IGKV2D-30A0A075B6S6 120 aa7.09□□□□□ -1.27
HDAC6-228ENST00000486227 IGKV2-30P06310 120 aa7.09□□□□□ -1.27
HDAC6-228ENST00000486227 PLA2G2DQ9UNK4 145 aa7.09□□□□□ -1.27
HDAC6-228ENST00000486227 HRNRQ86YZ3 2850 aaPredicted RBP7.09□□□□□ -1.27
HDAC6-228ENST00000486227 ZNF861PO60384 105 aa7.09□□□□□ -1.27
HDAC6-228ENST00000486227 A0A0G2JQZ4 141 aa7.08□□□□□ -1.28
HDAC6-228ENST00000486227 Q1T7F1 81 aa7.08□□□□□ -1.28
HDAC6-228ENST00000486227 COA5Q86WW8 74 aa7.08□□□□□ -1.28
HDAC6-228ENST00000486227 A8MWP4 228 aa7.07□□□□□ -1.28
HDAC6-228ENST00000486227 ATP11AUNQ6ZP68 121 aa7.07□□□□□ -1.28
HDAC6-228ENST00000486227 A0A1W2PNM2 257 aa7.07□□□□□ -1.28
HDAC6-228ENST00000486227 IGLV5-48A0A075B6I7 105 aa7.06□□□□□ -1.28
HDAC6-228ENST00000486227 CNBPP62633 177 aaKnown RBP7.06□□□□□ -1.28
HDAC6-228ENST00000486227 CELSR2Q9HCU4 2923 aa7.06□□□□□ -1.28
HDAC6-228ENST00000486227 IGFL1Q6UW32 110 aa7.06□□□□□ -1.28
HDAC6-228ENST00000486227 CRYBG3Q68DQ2 2970 aa7.06□□□□□ -1.28
HDAC6-228ENST00000486227 LOC101927531A0A1B0GV80 90 aa7.05□□□□□ -1.28
HDAC6-228ENST00000486227 LINC00313P59037 77 aa7.05□□□□□ -1.28
HDAC6-228ENST00000486227 TNP2Q05952 138 aa7.05□□□□□ -1.28
HDAC6-228ENST00000486227 KTN1-AS1Q86SY8 53 aa7.05□□□□□ -1.28
HDAC6-228ENST00000486227 MUC3AQ02505 3323 aa7.05□□□□□ -1.28
HDAC6-228ENST00000486227 SPINK1P00995 79 aa7.05□□□□□ -1.28
HDAC6-228ENST00000486227 SSBP3-AS1Q7Z2R9 100 aa7.05□□□□□ -1.28
HDAC6-228ENST00000486227 SPANXA2-OT1Q8N9U9 137 aa7.04□□□□□ -1.28
HDAC6-228ENST00000486227 LINC00304Q8N9R0 145 aa7.04□□□□□ -1.28
HDAC6-228ENST00000486227 ACYP2P14621 99 aa7.03□□□□□ -1.28
HDAC6-228ENST00000486227 NF1P21359 2839 aa7.03□□□□□ -1.28
HDAC6-228ENST00000486227 A0A1B0GU69 56 aa7.02□□□□□ -1.29
HDAC6-228ENST00000486227 IGLV7-43P04211 117 aa7.02□□□□□ -1.29
HDAC6-228ENST00000486227 FAM229BQ4G0N7 80 aa7.02□□□□□ -1.29
HDAC6-228ENST00000486227 Q8NDZ9 215 aa7.01□□□□□ -1.29
HDAC6-228ENST00000486227 ANAPC11Q9NYG5 84 aa7.01□□□□□ -1.29
HDAC6-228ENST00000486227 PSORS1C2Q9UIG4 136 aa7.01□□□□□ -1.29
HDAC6-228ENST00000486227 NIPBLQ6KC79 2804 aaeCLIP7□□□□□ -1.29
HDAC6-228ENST00000486227 Q96NJ1 140 aa7□□□□□ -1.29
HDAC6-228ENST00000486227 IGLV5-37A0A075B6J1 123 aa6.99□□□□□ -1.29
HDAC6-228ENST00000486227 FBN2P35556 2912 aa6.98□□□□□ -1.29
HDAC6-228ENST00000486227 C7orf65Q6ZTY9 151 aa6.98□□□□□ -1.29
HDAC6-228ENST00000486227 WDFY3Q8IZQ1 3526 aa6.98□□□□□ -1.29
HDAC6-228ENST00000486227 DCHS2Q6V1P9 2916 aa6.97□□□□□ -1.29
HDAC6-228ENST00000486227 RELNP78509 3460 aa6.97□□□□□ -1.29
HDAC6-228ENST00000486227 C8orf87E5RJ46 101 aa6.97□□□□□ -1.29
HDAC6-228ENST00000486227 DSCR10P59022 87 aa6.97□□□□□ -1.29
HDAC6-228ENST00000486227 SPRR4Q96PI1 79 aa6.96□□□□□ -1.29
HDAC6-228ENST00000486227 STAB2Q8WWQ8 2551 aa6.95□□□□□ -1.3
HDAC6-228ENST00000486227 CDC42SE1Q9NRR8 79 aa6.94□□□□□ -1.3
HDAC6-228ENST00000486227 KMT2BQ9UMN6 2715 aaPredicted RBP6.94□□□□□ -1.3
HDAC6-228ENST00000486227 MRPL34Q9BQ48 92 aaKnown RBP6.94□□□□□ -1.3
HDAC6-228ENST00000486227 LAMA5O15230 3695 aa6.93□□□□□ -1.3
HDAC6-228ENST00000486227 DCHS1Q96JQ0 3298 aa6.93□□□□□ -1.3
HDAC6-228ENST00000486227 LCA10Q71F78 164 aa6.93□□□□□ -1.3
HDAC6-228ENST00000486227 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.93□□□□□ -1.3
HDAC6-228ENST00000486227 COX6B2Q6YFQ2 88 aa6.92□□□□□ -1.3
HDAC6-228ENST00000486227 KRTAP1-5Q9BYS1 174 aa6.92□□□□□ -1.3
HDAC6-228ENST00000486227 C8orf17Q9NRJ1 99 aa6.92□□□□□ -1.3
HDAC6-228ENST00000486227 KRTAP26-1Q6PEX3 210 aa6.92□□□□□ -1.3
HDAC6-228ENST00000486227 ASPMQ8IZT6 3477 aa6.9□□□□□ -1.31
HDAC6-228ENST00000486227 DMDP11532 3685 aa6.9□□□□□ -1.31
HDAC6-228ENST00000486227 Q8N9P0 234 aaPredicted RBP6.88□□□□□ -1.31
HDAC6-228ENST00000486227 LCE6AA0A183 80 aa6.88□□□□□ -1.31
HDAC6-228ENST00000486227 Q75L30 129 aa6.88□□□□□ -1.31
HDAC6-228ENST00000486227 TENM4Q6N022 2769 aa6.87□□□□□ -1.31
HDAC6-228ENST00000486227 MXRA5Q9NR99 2828 aa6.87□□□□□ -1.31
HDAC6-228ENST00000486227 C9orf92A6NGG3 77 aa6.87□□□□□ -1.31
HDAC6-228ENST00000486227 A0A1B0GVX0 72 aa6.86□□□□□ -1.31
HDAC6-228ENST00000486227 UQCR11O14957 56 aa6.86□□□□□ -1.31
HDAC6-228ENST00000486227 RBM12B-AS1Q9P1G2 102 aa6.85□□□□□ -1.31
HDAC6-228ENST00000486227 IGLV7-46A0A075B6I9 117 aa6.85□□□□□ -1.31
HDAC6-228ENST00000486227 SPRR1AP35321 89 aa6.85□□□□□ -1.31
HDAC6-228ENST00000486227 Q5VV11 94 aa6.85□□□□□ -1.31
HDAC6-228ENST00000486227 MIR22HGQ0VDD5 57 aa6.81□□□□□ -1.32
HDAC6-228ENST00000486227 PLAC8Q9NZF1 115 aa6.8□□□□□ -1.32
HDAC6-228ENST00000486227 LINC01558Q9Y6Z2 57 aa6.79□□□□□ -1.32
HDAC6-228ENST00000486227 PRR26Q8N8Z3 221 aa6.79□□□□□ -1.32
HDAC6-228ENST00000486227 ZFHX4Q86UP3 3567 aa6.79□□□□□ -1.32
HDAC6-228ENST00000486227 IGLV8-61A0A075B6I0 122 aa6.77□□□□□ -1.33
HDAC6-228ENST00000486227 KRTAP21-3Q3LHN1 58 aa6.77□□□□□ -1.33
HDAC6-228ENST00000486227 ZCCHC13Q8WW36 166 aaKnown RBP6.76□□□□□ -1.33
HDAC6-228ENST00000486227 MMP24-AS1A0A0U1RRL7 71 aa6.74□□□□□ -1.33
HDAC6-228ENST00000486227 DMBT1Q9UGM3 2413 aaPredicted RBP6.72□□□□□ -1.33
HDAC6-228ENST00000486227 PANO1I0J062 215 aa6.71□□□□□ -1.34
HDAC6-228ENST00000486227 SPRR1BP22528 89 aa6.7□□□□□ -1.34
HDAC6-228ENST00000486227 LINC00472Q9H8W2 130 aa6.7□□□□□ -1.34
HDAC6-228ENST00000486227 Q5VSD8 79 aa6.69□□□□□ -1.34
HDAC6-228ENST00000486227 KRTAP10-1P60331 282 aa6.69□□□□□ -1.34
HDAC6-228ENST00000486227 KRTAP10-2P60368 255 aa6.69□□□□□ -1.34
HDAC6-228ENST00000486227 Q6ZSA8 131 aa6.69□□□□□ -1.34
HDAC6-228ENST00000486227 KRTAP4-16G5E9R7 235 aaPredicted RBP6.68□□□□□ -1.34
HDAC6-228ENST00000486227 HRES1P13985 223 aa6.68□□□□□ -1.34
HDAC6-228ENST00000486227 Q6ZR54 194 aa6.67□□□□□ -1.34
HDAC6-228ENST00000486227 SPINK7P58062 85 aa6.66□□□□□ -1.34
HDAC6-228ENST00000486227 LINC01554Q52M75 96 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms