RNA–Protein interactions for RNA: ENST00000482065.1

LIMS3-204, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 690 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-204ENST00000482065 IGLV8-61A0A075B6I0 122 aa8.04□□□□□ -1.12
LIMS3-204ENST00000482065 TCL1BO95988 128 aa8.03□□□□□ -1.12
LIMS3-204ENST00000482065 DLEU1O43261 78 aa8.02□□□□□ -1.13
LIMS3-204ENST00000482065 BVES-AS1Q5T3Y7 98 aa8.02□□□□□ -1.13
LIMS3-204ENST00000482065 LCE2CQ5TA81 110 aa8.02□□□□□ -1.13
LIMS3-204ENST00000482065 IGFL1Q6UW32 110 aa8.02□□□□□ -1.13
LIMS3-204ENST00000482065 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.02□□□□□ -1.13
LIMS3-204ENST00000482065 C14orf144Q96I85 54 aa8.02□□□□□ -1.13
LIMS3-204ENST00000482065 Q6JHZ5 121 aa8.01□□□□□ -1.13
LIMS3-204ENST00000482065 CLEC2BQ92478 149 aa8.01□□□□□ -1.13
LIMS3-204ENST00000482065 PAM16Q9Y3D7 125 aa8.01□□□□□ -1.13
LIMS3-204ENST00000482065 CFC1BP0CG36 223 aa8□□□□□ -1.13
LIMS3-204ENST00000482065 CFC1P0CG37 223 aa8□□□□□ -1.13
LIMS3-204ENST00000482065 KRTAP19-2Q3LHN2 52 aa8□□□□□ -1.13
LIMS3-204ENST00000482065 OCIAD2Q56VL3 154 aa8□□□□□ -1.13
LIMS3-204ENST00000482065 TRBV7-7A0A0K0K1E9 115 aa7.99□□□□□ -1.13
LIMS3-204ENST00000482065 SPATA45Q537H7 98 aa7.99□□□□□ -1.13
LIMS3-204ENST00000482065 RPL37P61927 97 aaKnown RBP7.98□□□□□ -1.13
LIMS3-204ENST00000482065 H3BUT2 72 aa7.97□□□□□ -1.13
LIMS3-204ENST00000482065 RAB37Q96AX2 223 aa7.97□□□□□ -1.13
LIMS3-204ENST00000482065 HIGD1BQ9P298 99 aa7.97□□□□□ -1.13
LIMS3-204ENST00000482065 C2orf91Q6ZV80 131 aa7.96□□□□□ -1.14
LIMS3-204ENST00000482065 PPDPFLQ8WWR9 84 aa7.96□□□□□ -1.14
LIMS3-204ENST00000482065 SNHG12Q9BXW3 62 aa7.96□□□□□ -1.14
LIMS3-204ENST00000482065 A0A0B4J2C4 111 aa7.95□□□□□ -1.14
LIMS3-204ENST00000482065 VAMP8Q9BV40 100 aa7.95□□□□□ -1.14
LIMS3-204ENST00000482065 FAM218AQ96MZ4 157 aa7.94□□□□□ -1.14
LIMS3-204ENST00000482065 MT1HP80294 61 aa7.92□□□□□ -1.14
LIMS3-204ENST00000482065 CEND1Q8N111 149 aa7.91□□□□□ -1.14
LIMS3-204ENST00000482065 H0YGX0 51 aa7.9□□□□□ -1.14
LIMS3-204ENST00000482065 KRTAP9-6A0A140TA67 174 aa7.88□□□□□ -1.15
LIMS3-204ENST00000482065 LST1O00453 97 aa7.88□□□□□ -1.15
LIMS3-204ENST00000482065 SNCGO76070 127 aa7.88□□□□□ -1.15
LIMS3-204ENST00000482065 FXYD2P54710 66 aa7.88□□□□□ -1.15
LIMS3-204ENST00000482065 OBSCN-AS1Q96MR7 158 aa7.88□□□□□ -1.15
LIMS3-204ENST00000482065 NDUFV3P56181 108 aaKnown RBP7.87□□□□□ -1.15
LIMS3-204ENST00000482065 PRO1854Q9UHT4 67 aa7.87□□□□□ -1.15
LIMS3-204ENST00000482065 TMEM238LA0A1B0GVL6 79 aa7.86□□□□□ -1.15
LIMS3-204ENST00000482065 A6NJY4 79 aa7.86□□□□□ -1.15
LIMS3-204ENST00000482065 LCE2DQ5TA82 110 aaPredicted RBP7.85□□□□□ -1.15
LIMS3-204ENST00000482065 Q6Q795 121 aa7.85□□□□□ -1.15
LIMS3-204ENST00000482065 TRIAP1O43715 76 aa7.84□□□□□ -1.15
LIMS3-204ENST00000482065 TEN1Q86WV5 123 aa7.84□□□□□ -1.15
LIMS3-204ENST00000482065 A0A1B0GX51 115 aa7.83□□□□□ -1.16
LIMS3-204ENST00000482065 FABP2P12104 132 aa7.83□□□□□ -1.16
LIMS3-204ENST00000482065 SS18L2Q9UHA2 77 aa7.83□□□□□ -1.16
LIMS3-204ENST00000482065 A0A087WSZ3 146 aa7.82□□□□□ -1.16
LIMS3-204ENST00000482065 H3BMG7 143 aa7.82□□□□□ -1.16
LIMS3-204ENST00000482065 PYY3Q5JQD4 70 aa7.82□□□□□ -1.16
LIMS3-204ENST00000482065 Q75L30 129 aa7.82□□□□□ -1.16
LIMS3-204ENST00000482065 COX6B2Q6YFQ2 88 aa7.81□□□□□ -1.16
LIMS3-204ENST00000482065 FLGP20930 4061 aaPredicted RBP7.8□□□□□ -1.16
LIMS3-204ENST00000482065 K7ERJ3 54 aa7.8□□□□□ -1.16
LIMS3-204ENST00000482065 Q96NJ1 140 aa7.8□□□□□ -1.16
LIMS3-204ENST00000482065 HSD52Q0P140 79 aa7.79□□□□□ -1.16
LIMS3-204ENST00000482065 ATP11AUNQ6ZP68 121 aa7.79□□□□□ -1.16
LIMS3-204ENST00000482065 A0A1W2PNM2 257 aa7.78□□□□□ -1.16
LIMS3-204ENST00000482065 GHRHP01286 108 aa7.78□□□□□ -1.16
LIMS3-204ENST00000482065 A0A1B0GV72 72 aa7.77□□□□□ -1.17
LIMS3-204ENST00000482065 LORP23490 312 aaPredicted RBP7.77□□□□□ -1.17
LIMS3-204ENST00000482065 KRTAP10-6P60371 365 aaPredicted RBP7.77□□□□□ -1.17
LIMS3-204ENST00000482065 M0R2T5 61 aa7.76□□□□□ -1.17
LIMS3-204ENST00000482065 PSMB2P49721 201 aa7.76□□□□□ -1.17
LIMS3-204ENST00000482065 DNAL4O96015 105 aa7.75□□□□□ -1.17
LIMS3-204ENST00000482065 ORMDL1Q9P0S3 153 aa7.75□□□□□ -1.17
LIMS3-204ENST00000482065 C20orf166-AS1Q96NR2 134 aa7.74□□□□□ -1.17
LIMS3-204ENST00000482065 TMA7Q9Y2S6 64 aaKnown RBP7.74□□□□□ -1.17
LIMS3-204ENST00000482065 DSCR10P59022 87 aa7.73□□□□□ -1.17
LIMS3-204ENST00000482065 A8MUU9 505 aa7.72□□□□□ -1.17
LIMS3-204ENST00000482065 ANKRD29Q8N6D5 301 aa7.72□□□□□ -1.17
LIMS3-204ENST00000482065 SIGMAR1Q99720 223 aa7.72□□□□□ -1.17
LIMS3-204ENST00000482065 UQCR10Q9UDW1 63 aa7.71□□□□□ -1.18
LIMS3-204ENST00000482065 COX6CP09669 75 aa7.7□□□□□ -1.18
LIMS3-204ENST00000482065 TMEM256-PLSCR3K7ERE1 68 aa7.69□□□□□ -1.18
LIMS3-204ENST00000482065 TRBV7-4A0A0J9YYF1 115 aa7.68□□□□□ -1.18
LIMS3-204ENST00000482065 H3BQ85 93 aa7.68□□□□□ -1.18
LIMS3-204ENST00000482065 CRCT1Q9UGL9 99 aa7.68□□□□□ -1.18
LIMS3-204ENST00000482065 FSIP2Q5CZC0 6907 aa7.67□□□□□ -1.18
LIMS3-204ENST00000482065 IGKV4-1P06312 121 aa7.67□□□□□ -1.18
LIMS3-204ENST00000482065 CCKP06307 115 aa7.65□□□□□ -1.18
LIMS3-204ENST00000482065 UBE2V1Q13404 147 aa7.65□□□□□ -1.18
LIMS3-204ENST00000482065 DEFB116Q30KQ4 102 aa7.65□□□□□ -1.18
LIMS3-204ENST00000482065 TRACP01848 142 aa7.64□□□□□ -1.19
LIMS3-204ENST00000482065 LINC00313P59037 77 aa7.64□□□□□ -1.19
LIMS3-204ENST00000482065 KRTAP16-1A8MUX0 517 aa7.63□□□□□ -1.19
LIMS3-204ENST00000482065 SCGB1C2P0DMR2 95 aa7.63□□□□□ -1.19
LIMS3-204ENST00000482065 NOTCH2NLQ7Z3S9 236 aa7.63□□□□□ -1.19
LIMS3-204ENST00000482065 LINC00472Q9H8W2 130 aa7.63□□□□□ -1.19
LIMS3-204ENST00000482065 VPS25Q9BRG1 176 aa7.61□□□□□ -1.19
LIMS3-204ENST00000482065 TRBV20-1A0A075B6N2 111 aa7.58□□□□□ -1.2
LIMS3-204ENST00000482065 IGHV6-1A0A0B4J1U7 121 aa7.58□□□□□ -1.2
LIMS3-204ENST00000482065 RBM3P98179 157 aaKnown RBP7.58□□□□□ -1.2
LIMS3-204ENST00000482065 DSCR8Q96T75 97 aa7.56□□□□□ -1.2
LIMS3-204ENST00000482065 BAALC-AS2P0C853 105 aa7.55□□□□□ -1.2
LIMS3-204ENST00000482065 NAA38Q9BRA0 125 aaKnown RBP7.54□□□□□ -1.2
LIMS3-204ENST00000482065 A0A1B0GVX0 72 aa7.52□□□□□ -1.21
LIMS3-204ENST00000482065 C9JAW5 83 aa7.51□□□□□ -1.21
LIMS3-204ENST00000482065 C8orf87E5RJ46 101 aa7.5□□□□□ -1.21
LIMS3-204ENST00000482065 FAM236DA0A1B0GTK5 79 aa7.49□□□□□ -1.21
LIMS3-204ENST00000482065 M0R143 59 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms