RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 ZNF815PA8K554 130 aa9.04□□□□□ -0.96
SHH-205ENST00000472308 NHP2Q9NX24 153 aaKnown RBP9.04□□□□□ -0.96
SHH-205ENST00000472308 MUC12Q9UKN1 5478 aa9.03□□□□□ -0.96
SHH-205ENST00000472308 APOC3P02656 99 aa9.03□□□□□ -0.96
SHH-205ENST00000472308 A6NDN8 102 aa9.02□□□□□ -0.97
SHH-205ENST00000472308 LST1O00453 97 aa9.02□□□□□ -0.97
SHH-205ENST00000472308 HRES1P13985 223 aa9.01□□□□□ -0.97
SHH-205ENST00000472308 SNAPINO95295 136 aa8.99□□□□□ -0.97
SHH-205ENST00000472308 TRGC2P03986 189 aa8.99□□□□□ -0.97
SHH-205ENST00000472308 SMIM11BQ8TCY0 68 aa8.99□□□□□ -0.97
SHH-205ENST00000472308 TRAV13-2A0A0B4J235 113 aa8.98□□□□□ -0.97
SHH-205ENST00000472308 OCIAD2Q56VL3 154 aa8.98□□□□□ -0.97
SHH-205ENST00000472308 SVBPQ8N300 66 aa8.97□□□□□ -0.97
SHH-205ENST00000472308 Q6ZQY7 126 aa8.96□□□□□ -0.98
SHH-205ENST00000472308 RBM12B-AS1Q9P1G2 102 aa8.96□□□□□ -0.98
SHH-205ENST00000472308 SLC7A5P1Q8MH63 180 aa8.95□□□□□ -0.98
SHH-205ENST00000472308 LINC00575Q6W349 94 aa8.94□□□□□ -0.98
SHH-205ENST00000472308 SYS1-DBNDD2H3BUS1 97 aa8.93□□□□□ -0.98
SHH-205ENST00000472308 DSCR10P59022 87 aa8.93□□□□□ -0.98
SHH-205ENST00000472308 IFITM1P13164 125 aa8.91□□□□□ -0.98
SHH-205ENST00000472308 H3BUT2 72 aa8.9□□□□□ -0.98
SHH-205ENST00000472308 LINC01545Q5VT33 79 aa8.9□□□□□ -0.98
SHH-205ENST00000472308 NOTCH2NLQ7Z3S9 236 aa8.9□□□□□ -0.98
SHH-205ENST00000472308 MUSTN1Q8IVN3 82 aa8.9□□□□□ -0.98
SHH-205ENST00000472308 NDUFA5Q16718 116 aa8.89□□□□□ -0.99
SHH-205ENST00000472308 SCGB1D4Q6XE38 83 aa8.89□□□□□ -0.99
SHH-205ENST00000472308 COPS9Q8WXC6 57 aa8.89□□□□□ -0.99
SHH-205ENST00000472308 hADV29S1A0JD25 119 aa8.88□□□□□ -0.99
SHH-205ENST00000472308 SS18L2Q9UHA2 77 aa8.88□□□□□ -0.99
SHH-205ENST00000472308 VAMP3Q15836 100 aa8.84□□□□□ -0.99
SHH-205ENST00000472308 KRTAP20-1Q3LI63 56 aa8.84□□□□□ -0.99
SHH-205ENST00000472308 Q6ZVH6 145 aa8.84□□□□□ -0.99
SHH-205ENST00000472308 Q8N9P0 234 aaPredicted RBP8.82□□□□□ -1
SHH-205ENST00000472308 ANKRD39Q53RE8 183 aa8.81□□□□□ -1
SHH-205ENST00000472308 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.81□□□□□ -1
SHH-205ENST00000472308 PET117Q6UWS5 81 aa8.8□□□□□ -1
SHH-205ENST00000472308 PPDPFLQ8WWR9 84 aa8.8□□□□□ -1
SHH-205ENST00000472308 A0A087WSZ3 146 aa8.79□□□□□ -1
SHH-205ENST00000472308 SNHG12Q9BXW3 62 aa8.79□□□□□ -1
SHH-205ENST00000472308 SCGB1D1O95968 90 aa8.78□□□□□ -1
SHH-205ENST00000472308 LINC00313P59037 77 aa8.77□□□□□ -1.01
SHH-205ENST00000472308 TEN1Q86WV5 123 aa8.77□□□□□ -1.01
SHH-205ENST00000472308 COLCA2A8K830 154 aa8.76□□□□□ -1.01
SHH-205ENST00000472308 A8MWP4 228 aa8.76□□□□□ -1.01
SHH-205ENST00000472308 SIGMAR1Q99720 223 aa8.76□□□□□ -1.01
SHH-205ENST00000472308 C3orf79P0CE67 100 aa8.73□□□□□ -1.01
SHH-205ENST00000472308 MTURNQ8N3F0 131 aa8.73□□□□□ -1.01
SHH-205ENST00000472308 MDN1Q9NU22 5596 aa8.72□□□□□ -1.01
SHH-205ENST00000472308 HIST1H2BKO60814 126 aa8.65□□□□□ -1.02
SHH-205ENST00000472308 IGKV4-1P06312 121 aa8.65□□□□□ -1.02
SHH-205ENST00000472308 HIST1H2BJP06899 126 aa8.65□□□□□ -1.02
SHH-205ENST00000472308 HIST1H2BOP23527 126 aa8.65□□□□□ -1.02
SHH-205ENST00000472308 HIST1H2BBP33778 126 aa8.65□□□□□ -1.02
SHH-205ENST00000472308 HIST1H2BDP58876 126 aa8.65□□□□□ -1.02
SHH-205ENST00000472308 HIST1H2BCP62807 126 aa8.65□□□□□ -1.02
SHH-205ENST00000472308 HIST2H2BEQ16778 126 aa8.65□□□□□ -1.02
SHH-205ENST00000472308 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.65□□□□□ -1.02
SHH-205ENST00000472308 ATOH7Q8N100 152 aa8.65□□□□□ -1.02
SHH-205ENST00000472308 HIST1H2BHQ93079 126 aa8.65□□□□□ -1.02
SHH-205ENST00000472308 HIST1H2BNQ99877 126 aa8.65□□□□□ -1.02
SHH-205ENST00000472308 HIST1H2BMQ99879 126 aa8.65□□□□□ -1.02
SHH-205ENST00000472308 KMT2DO14686 5537 aa8.65□□□□□ -1.03
SHH-205ENST00000472308 NDUFV3P56181 108 aaKnown RBP8.64□□□□□ -1.03
SHH-205ENST00000472308 KRTDAPP60985 99 aa8.64□□□□□ -1.03
SHH-205ENST00000472308 A0A1W2PNM2 257 aa8.63□□□□□ -1.03
SHH-205ENST00000472308 BVES-AS1Q5T3Y7 98 aa8.63□□□□□ -1.03
SHH-205ENST00000472308 SPINK7P58062 85 aa8.62□□□□□ -1.03
SHH-205ENST00000472308 C12orf57Q99622 126 aa8.59□□□□□ -1.03
SHH-205ENST00000472308 H3BMG7 143 aa8.58□□□□□ -1.04
SHH-205ENST00000472308 IGHV6-1A0A0B4J1U7 121 aa8.57□□□□□ -1.04
SHH-205ENST00000472308 DEFB116Q30KQ4 102 aa8.57□□□□□ -1.04
SHH-205ENST00000472308 ZCCHC13Q8WW36 166 aaKnown RBP8.56□□□□□ -1.04
SHH-205ENST00000472308 KRTAP5-9P26371 169 aa8.55□□□□□ -1.04
SHH-205ENST00000472308 FAM218AQ96MZ4 157 aa8.55□□□□□ -1.04
SHH-205ENST00000472308 WFDC13Q8IUB5 93 aa8.54□□□□□ -1.04
SHH-205ENST00000472308 LINC00472Q9H8W2 130 aa8.54□□□□□ -1.04
SHH-205ENST00000472308 A6NN06 94 aa8.53□□□□□ -1.04
SHH-205ENST00000472308 TRBV7-4A0A0J9YYF1 115 aa8.49□□□□□ -1.05
SHH-205ENST00000472308 COA6Q5JTJ3 125 aaKnown RBP8.47□□□□□ -1.05
SHH-205ENST00000472308 C8orf87E5RJ46 101 aa8.46□□□□□ -1.06
SHH-205ENST00000472308 FABP2P12104 132 aa8.46□□□□□ -1.06
SHH-205ENST00000472308 A0A1B0GVX0 72 aa8.45□□□□□ -1.06
SHH-205ENST00000472308 SNRPEP62304 92 aaKnown RBP8.45□□□□□ -1.06
SHH-205ENST00000472308 RAB37Q96AX2 223 aa8.45□□□□□ -1.06
SHH-205ENST00000472308 MT1BP07438 61 aa8.44□□□□□ -1.06
SHH-205ENST00000472308 H0YGX0 51 aa8.43□□□□□ -1.06
SHH-205ENST00000472308 SNCGO76070 127 aa8.43□□□□□ -1.06
SHH-205ENST00000472308 GHRHP01286 108 aa8.42□□□□□ -1.06
SHH-205ENST00000472308 KRTAP2-3P0C7H8 128 aa8.41□□□□□ -1.06
SHH-205ENST00000472308 ANKRD29Q8N6D5 301 aa8.41□□□□□ -1.06
SHH-205ENST00000472308 KRTAP2-4Q9BYR9 128 aa8.41□□□□□ -1.06
SHH-205ENST00000472308 A0A1B0GV72 72 aa8.39□□□□□ -1.07
SHH-205ENST00000472308 HIST1H4GQ99525 98 aa8.39□□□□□ -1.07
SHH-205ENST00000472308 H1FX-AS1Q4G0G2 97 aa8.37□□□□□ -1.07
SHH-205ENST00000472308 KRTAP10-5P60370 271 aa8.36□□□□□ -1.07
SHH-205ENST00000472308 A0A1B0GX51 115 aa8.35□□□□□ -1.07
SHH-205ENST00000472308 TRACP01848 142 aa8.34□□□□□ -1.07
SHH-205ENST00000472308 CCKP06307 115 aa8.34□□□□□ -1.07
SHH-205ENST00000472308 Q5VV11 94 aa8.31□□□□□ -1.08
SHH-205ENST00000472308 A0A0B4J2C4 111 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms