RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 HIST1H4GQ99525 98 aa9.45□□□□□ -0.9
COL7A1-206ENST00000466591 RPL37P61927 97 aaKnown RBP9.44□□□□□ -0.9
COL7A1-206ENST00000466591 CLEC2BQ92478 149 aa9.44□□□□□ -0.9
COL7A1-206ENST00000466591 C12orf57Q99622 126 aa9.44□□□□□ -0.9
COL7A1-206ENST00000466591 SCGB1D1O95968 90 aa9.43□□□□□ -0.9
COL7A1-206ENST00000466591 BVES-AS1Q5T3Y7 98 aa9.43□□□□□ -0.9
COL7A1-206ENST00000466591 SNHG12Q9BXW3 62 aa9.43□□□□□ -0.9
COL7A1-206ENST00000466591 SNCGO76070 127 aa9.42□□□□□ -0.9
COL7A1-206ENST00000466591 CFC1BP0CG36 223 aa9.42□□□□□ -0.9
COL7A1-206ENST00000466591 M0R2T5 61 aa9.41□□□□□ -0.9
COL7A1-206ENST00000466591 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.4□□□□□ -0.9
COL7A1-206ENST00000466591 TRBV7-7A0A0K0K1E9 115 aa9.39□□□□□ -0.91
COL7A1-206ENST00000466591 OCIAD2Q56VL3 154 aa9.39□□□□□ -0.91
COL7A1-206ENST00000466591 IGFL1Q6UW32 110 aa9.38□□□□□ -0.91
COL7A1-206ENST00000466591 LCE2CQ5TA81 110 aa9.37□□□□□ -0.91
COL7A1-206ENST00000466591 RAB37Q96AX2 223 aa9.37□□□□□ -0.91
COL7A1-206ENST00000466591 MT1HP80294 61 aa9.36□□□□□ -0.91
COL7A1-206ENST00000466591 LCE2DQ5TA82 110 aaPredicted RBP9.36□□□□□ -0.91
COL7A1-206ENST00000466591 PPDPFLQ8WWR9 84 aa9.36□□□□□ -0.91
COL7A1-206ENST00000466591 LST1O00453 97 aa9.34□□□□□ -0.91
COL7A1-206ENST00000466591 ATP11AUNQ6ZP68 121 aa9.34□□□□□ -0.91
COL7A1-206ENST00000466591 S100A1P23297 94 aa9.33□□□□□ -0.92
COL7A1-206ENST00000466591 OBSCN-AS1Q96MR7 158 aa9.33□□□□□ -0.92
COL7A1-206ENST00000466591 H3BUT2 72 aa9.32□□□□□ -0.92
COL7A1-206ENST00000466591 COX8AP10176 69 aa9.32□□□□□ -0.92
COL7A1-206ENST00000466591 KRTAP19-2Q3LHN2 52 aa9.31□□□□□ -0.92
COL7A1-206ENST00000466591 SS18L2Q9UHA2 77 aa9.31□□□□□ -0.92
COL7A1-206ENST00000466591 Q6Q795 121 aa9.3□□□□□ -0.92
COL7A1-206ENST00000466591 H0YGX0 51 aa9.27□□□□□ -0.93
COL7A1-206ENST00000466591 GHRHP01286 108 aa9.27□□□□□ -0.93
COL7A1-206ENST00000466591 C14orf144Q96I85 54 aa9.26□□□□□ -0.93
COL7A1-206ENST00000466591 Q96NJ1 140 aa9.26□□□□□ -0.93
COL7A1-206ENST00000466591 PAM16Q9Y3D7 125 aa9.26□□□□□ -0.93
COL7A1-206ENST00000466591 DLEU1O43261 78 aa9.25□□□□□ -0.93
COL7A1-206ENST00000466591 CFC1P0CG37 223 aa9.24□□□□□ -0.93
COL7A1-206ENST00000466591 SPATA45Q537H7 98 aa9.24□□□□□ -0.93
COL7A1-206ENST00000466591 Q75L30 129 aa9.24□□□□□ -0.93
COL7A1-206ENST00000466591 FABP2P12104 132 aa9.23□□□□□ -0.93
COL7A1-206ENST00000466591 NDUFV3P56181 108 aaKnown RBP9.23□□□□□ -0.93
COL7A1-206ENST00000466591 VAMP8Q9BV40 100 aa9.23□□□□□ -0.93
COL7A1-206ENST00000466591 CRCT1Q9UGL9 99 aa9.23□□□□□ -0.93
COL7A1-206ENST00000466591 A0A0B4J2C4 111 aa9.22□□□□□ -0.93
COL7A1-206ENST00000466591 TMEM238LA0A1B0GVL6 79 aa9.22□□□□□ -0.93
COL7A1-206ENST00000466591 A6NJY4 79 aa9.22□□□□□ -0.93
COL7A1-206ENST00000466591 TEN1Q86WV5 123 aa9.22□□□□□ -0.93
COL7A1-206ENST00000466591 KRTAP10-6P60371 365 aaPredicted RBP9.21□□□□□ -0.94
COL7A1-206ENST00000466591 HIGD1BQ9P298 99 aa9.2□□□□□ -0.94
COL7A1-206ENST00000466591 A0A087WSZ3 146 aa9.19□□□□□ -0.94
COL7A1-206ENST00000466591 H3BMG7 143 aa9.19□□□□□ -0.94
COL7A1-206ENST00000466591 LORP23490 312 aaPredicted RBP9.17□□□□□ -0.94
COL7A1-206ENST00000466591 FAM218AQ96MZ4 157 aa9.17□□□□□ -0.94
COL7A1-206ENST00000466591 SIGMAR1Q99720 223 aa9.17□□□□□ -0.94
COL7A1-206ENST00000466591 PRO1854Q9UHT4 67 aa9.17□□□□□ -0.94
COL7A1-206ENST00000466591 DNAL4O96015 105 aa9.16□□□□□ -0.94
COL7A1-206ENST00000466591 CEND1Q8N111 149 aa9.16□□□□□ -0.94
COL7A1-206ENST00000466591 TRBV20-1A0A075B6N2 111 aa9.15□□□□□ -0.94
COL7A1-206ENST00000466591 A0A1B0GX51 115 aa9.15□□□□□ -0.94
COL7A1-206ENST00000466591 PSMB2P49721 201 aa9.12□□□□□ -0.95
COL7A1-206ENST00000466591 A0A1B0GV72 72 aa9.11□□□□□ -0.95
COL7A1-206ENST00000466591 C2orf91Q6ZV80 131 aa9.11□□□□□ -0.95
COL7A1-206ENST00000466591 FSIP2Q5CZC0 6907 aa9.1□□□□□ -0.95
COL7A1-206ENST00000466591 DSCR10P59022 87 aa9.09□□□□□ -0.95
COL7A1-206ENST00000466591 ANKRD29Q8N6D5 301 aa9.09□□□□□ -0.95
COL7A1-206ENST00000466591 C20orf166-AS1Q96NR2 134 aa9.08□□□□□ -0.96
COL7A1-206ENST00000466591 ORMDL1Q9P0S3 153 aa9.08□□□□□ -0.96
COL7A1-206ENST00000466591 H3BQ85 93 aa9.07□□□□□ -0.96
COL7A1-206ENST00000466591 TRIAP1O43715 76 aa9.07□□□□□ -0.96
COL7A1-206ENST00000466591 COX6CP09669 75 aa9.07□□□□□ -0.96
COL7A1-206ENST00000466591 FXYD2P54710 66 aa9.07□□□□□ -0.96
COL7A1-206ENST00000466591 IGKV4-1P06312 121 aa9.06□□□□□ -0.96
COL7A1-206ENST00000466591 A8MUU9 505 aa9.05□□□□□ -0.96
COL7A1-206ENST00000466591 FAM236DA0A1B0GTK5 79 aa9.04□□□□□ -0.96
COL7A1-206ENST00000466591 FAM236CP0DP71 79 aa9.04□□□□□ -0.96
COL7A1-206ENST00000466591 LINC00313P59037 77 aa9.04□□□□□ -0.96
COL7A1-206ENST00000466591 A0A1W2PNM2 257 aa9.02□□□□□ -0.97
COL7A1-206ENST00000466591 TMEM256-PLSCR3K7ERE1 68 aa9.02□□□□□ -0.97
COL7A1-206ENST00000466591 TRACP01848 142 aa9.02□□□□□ -0.97
COL7A1-206ENST00000466591 HSD52Q0P140 79 aa9.02□□□□□ -0.97
COL7A1-206ENST00000466591 TRBV7-4A0A0J9YYF1 115 aa9.01□□□□□ -0.97
COL7A1-206ENST00000466591 K7ERJ3 54 aa8.99□□□□□ -0.97
COL7A1-206ENST00000466591 CCKP06307 115 aa8.99□□□□□ -0.97
COL7A1-206ENST00000466591 VPS25Q9BRG1 176 aa8.99□□□□□ -0.97
COL7A1-206ENST00000466591 FLGP20930 4061 aaPredicted RBP8.99□□□□□ -0.97
COL7A1-206ENST00000466591 DEFB116Q30KQ4 102 aa8.98□□□□□ -0.97
COL7A1-206ENST00000466591 IGHV6-1A0A0B4J1U7 121 aa8.96□□□□□ -0.98
COL7A1-206ENST00000466591 SCGB1C2P0DMR2 95 aa8.96□□□□□ -0.98
COL7A1-206ENST00000466591 RBM12B-AS1Q9P1G2 102 aa8.94□□□□□ -0.98
COL7A1-206ENST00000466591 DSCR8Q96T75 97 aa8.92□□□□□ -0.98
COL7A1-206ENST00000466591 UBE2V1Q13404 147 aa8.91□□□□□ -0.98
COL7A1-206ENST00000466591 PYY3Q5JQD4 70 aa8.9□□□□□ -0.98
COL7A1-206ENST00000466591 UQCR10Q9UDW1 63 aa8.9□□□□□ -0.98
COL7A1-206ENST00000466591 RBM3P98179 157 aaKnown RBP8.89□□□□□ -0.99
COL7A1-206ENST00000466591 LINC00472Q9H8W2 130 aa8.88□□□□□ -0.99
COL7A1-206ENST00000466591 KRTAP16-1A8MUX0 517 aa8.86□□□□□ -0.99
COL7A1-206ENST00000466591 C8orf87E5RJ46 101 aa8.86□□□□□ -0.99
COL7A1-206ENST00000466591 NOTCH2NLQ7Z3S9 236 aa8.85□□□□□ -0.99
COL7A1-206ENST00000466591 MTURNQ8N3F0 131 aa8.85□□□□□ -0.99
COL7A1-206ENST00000466591 C21orf62-AS1Q17RA5 79 aa8.84□□□□□ -0.99
COL7A1-206ENST00000466591 TMA7Q9Y2S6 64 aaKnown RBP8.84□□□□□ -0.99
COL7A1-206ENST00000466591 A0A1B0GVX0 72 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 91.2 ms