RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 DPH3Q96FX2 82 aa7.3□□□□□ -1.24
USP54-209ENST00000464635 PHF5AQ7RTV0 110 aaKnown RBP7.29□□□□□ -1.24
USP54-209ENST00000464635 Q9BRP9 147 aa7.29□□□□□ -1.24
USP54-209ENST00000464635 BCE1O60756 84 aa7.28□□□□□ -1.24
USP54-209ENST00000464635 RPL37AP61513 92 aaKnown RBP7.28□□□□□ -1.24
USP54-209ENST00000464635 RBM3P98179 157 aaKnown RBP7.27□□□□□ -1.25
USP54-209ENST00000464635 LOC110117498A0A087WWA1 95 aa7.26□□□□□ -1.25
USP54-209ENST00000464635 LINC01547P58512 204 aaPredicted RBP7.26□□□□□ -1.25
USP54-209ENST00000464635 FAM19A1Q7Z5A9 133 aa7.26□□□□□ -1.25
USP54-209ENST00000464635 KRTAP13-1Q8IUC0 172 aa7.26□□□□□ -1.25
USP54-209ENST00000464635 SMCR5Q8TEV8 140 aa7.26□□□□□ -1.25
USP54-209ENST00000464635 A0A1B0GW54 56 aa7.25□□□□□ -1.25
USP54-209ENST00000464635 SPRR1BP22528 89 aa7.25□□□□□ -1.25
USP54-209ENST00000464635 NDUFV3P56181 108 aaKnown RBP7.25□□□□□ -1.25
USP54-209ENST00000464635 Q8N377 158 aa7.24□□□□□ -1.25
USP54-209ENST00000464635 LAMTOR3Q9UHA4 124 aa7.24□□□□□ -1.25
USP54-209ENST00000464635 CCKP06307 115 aa7.23□□□□□ -1.25
USP54-209ENST00000464635 HMCN2Q8NDA2 5059 aa7.23□□□□□ -1.25
USP54-209ENST00000464635 TRBV7-4A0A0J9YYF1 115 aa7.22□□□□□ -1.25
USP54-209ENST00000464635 OXTP01178 125 aa7.22□□□□□ -1.25
USP54-209ENST00000464635 KRTAP11-1Q8IUC1 163 aa7.22□□□□□ -1.25
USP54-209ENST00000464635 DSCR8Q96T75 97 aa7.22□□□□□ -1.25
USP54-209ENST00000464635 UBE2AP49459 152 aa7.21□□□□□ -1.26
USP54-209ENST00000464635 IGLV8-61A0A075B6I0 122 aa7.19□□□□□ -1.26
USP54-209ENST00000464635 ZNF861PO60384 105 aa7.19□□□□□ -1.26
USP54-209ENST00000464635 ERC2-IT1O76042 136 aa7.19□□□□□ -1.26
USP54-209ENST00000464635 Q6ZQT0 140 aa7.19□□□□□ -1.26
USP54-209ENST00000464635 VPS25Q9BRG1 176 aa7.19□□□□□ -1.26
USP54-209ENST00000464635 C14orf132Q9NPU4 83 aa7.19□□□□□ -1.26
USP54-209ENST00000464635 PSORS1C2Q9UIG4 136 aa7.19□□□□□ -1.26
USP54-209ENST00000464635 PRLHP81277 87 aa7.18□□□□□ -1.26
USP54-209ENST00000464635 CDIP1Q9H305 208 aa7.18□□□□□ -1.26
USP54-209ENST00000464635 ZNF706Q9Y5V0 76 aaPredicted RBP7.18□□□□□ -1.26
USP54-209ENST00000464635 MT1HL1P0DM35 61 aa7.17□□□□□ -1.26
USP54-209ENST00000464635 SMIM29Q86T20 159 aa7.17□□□□□ -1.26
USP54-209ENST00000464635 HIGD2AQ9BW72 106 aa7.17□□□□□ -1.26
USP54-209ENST00000464635 LINC00483Q53H64 154 aa7.15□□□□□ -1.26
USP54-209ENST00000464635 GAGE2AQ6NT46 116 aa7.15□□□□□ -1.26
USP54-209ENST00000464635 ST20-AS1Q8NBB2 130 aa7.15□□□□□ -1.26
USP54-209ENST00000464635 IGLV7-43P04211 117 aa7.14□□□□□ -1.27
USP54-209ENST00000464635 C1orf137Q5JT78 98 aa7.14□□□□□ -1.27
USP54-209ENST00000464635 Q6JHZ5 121 aa7.14□□□□□ -1.27
USP54-209ENST00000464635 LINC00643Q86TS7 51 aa7.14□□□□□ -1.27
USP54-209ENST00000464635 DEFB105AQ8NG35 78 aa7.14□□□□□ -1.27
USP54-209ENST00000464635 SIGMAR1Q99720 223 aa7.14□□□□□ -1.27
USP54-209ENST00000464635 F8WEM9 126 aa7.13□□□□□ -1.27
USP54-209ENST00000464635 SPRR4Q96PI1 79 aa7.12□□□□□ -1.27
USP54-209ENST00000464635 IMUPQ9GZP8 106 aa7.12□□□□□ -1.27
USP54-209ENST00000464635 Q6Q795 121 aa7.11□□□□□ -1.27
USP54-209ENST00000464635 UBR4Q5T4S7 5183 aa7.11□□□□□ -1.27
USP54-209ENST00000464635 ATP5EP2Q5VTU8 51 aa7.09□□□□□ -1.27
USP54-209ENST00000464635 UBL5Q9BZL1 73 aa7.09□□□□□ -1.27
USP54-209ENST00000464635 LINC00846Q9NV44 126 aa7.09□□□□□ -1.27
USP54-209ENST00000464635 SCGB1A1P11684 91 aa7.08□□□□□ -1.28
USP54-209ENST00000464635 Q8NBF4 154 aa7.08□□□□□ -1.28
USP54-209ENST00000464635 CRYGAP11844 174 aa7.07□□□□□ -1.28
USP54-209ENST00000464635 TNXBP22105 4242 aa7.06□□□□□ -1.28
USP54-209ENST00000464635 TRBV7-7A0A0K0K1E9 115 aa7.06□□□□□ -1.28
USP54-209ENST00000464635 C3orf22Q8N5N4 141 aa7.05□□□□□ -1.28
USP54-209ENST00000464635 A0A1W2PNM2 257 aa7.04□□□□□ -1.28
USP54-209ENST00000464635 FAM229BQ4G0N7 80 aa7.04□□□□□ -1.28
USP54-209ENST00000464635 IGFL1Q6UW32 110 aa7.04□□□□□ -1.28
USP54-209ENST00000464635 CXCL6P80162 114 aa7.03□□□□□ -1.28
USP54-209ENST00000464635 SSBP3-AS1Q7Z2R9 100 aa7.03□□□□□ -1.28
USP54-209ENST00000464635 A0A1B0GV72 72 aa7.02□□□□□ -1.29
USP54-209ENST00000464635 MT-ATP8P03928 68 aa7.02□□□□□ -1.29
USP54-209ENST00000464635 SPINK6Q6UWN8 80 aa7.02□□□□□ -1.29
USP54-209ENST00000464635 Q6ZVQ6 151 aa7.01□□□□□ -1.29
USP54-209ENST00000464635 CD164Q04900 197 aa7□□□□□ -1.29
USP54-209ENST00000464635 NREPQ16612 68 aa7□□□□□ -1.29
USP54-209ENST00000464635 KRTAP10-8P60410 259 aa6.98□□□□□ -1.29
USP54-209ENST00000464635 LRP2P98164 4655 aa6.97□□□□□ -1.29
USP54-209ENST00000464635 SS18L2Q9UHA2 77 aa6.94□□□□□ -1.3
USP54-209ENST00000464635 KRTAP1-4P0C5Y4 121 aa6.93□□□□□ -1.3
USP54-209ENST00000464635 C9orf153Q5TBE3 101 aa6.93□□□□□ -1.3
USP54-209ENST00000464635 IGLV9-49A0A0B4J1Y8 123 aa6.92□□□□□ -1.3
USP54-209ENST00000464635 BPY2O14599 106 aa6.92□□□□□ -1.3
USP54-209ENST00000464635 Q5XG85 94 aa6.92□□□□□ -1.3
USP54-209ENST00000464635 A0A087WSZ3 146 aa6.91□□□□□ -1.3
USP54-209ENST00000464635 J3KT08 172 aa6.91□□□□□ -1.3
USP54-209ENST00000464635 MOBPQ13875 183 aa6.91□□□□□ -1.3
USP54-209ENST00000464635 ASB16-AS1Q495Z4 193 aa6.91□□□□□ -1.3
USP54-209ENST00000464635 IGKV3D-7A0A0C4DH55 119 aa6.89□□□□□ -1.31
USP54-209ENST00000464635 HIST1H4AP62805 103 aaKnown RBP6.89□□□□□ -1.31
USP54-209ENST00000464635 PRR26Q8N8Z3 221 aa6.89□□□□□ -1.31
USP54-209ENST00000464635 LINC00472Q9H8W2 130 aa6.89□□□□□ -1.31
USP54-209ENST00000464635 RNF213Q63HN8 5207 aa6.89□□□□□ -1.31
USP54-209ENST00000464635 RPS29P62273 56 aaKnown RBP6.87□□□□□ -1.31
USP54-209ENST00000464635 ANAPC11Q9NYG5 84 aa6.87□□□□□ -1.31
USP54-209ENST00000464635 KRTAP13-2Q52LG2 175 aa6.86□□□□□ -1.31
USP54-209ENST00000464635 A0A087X002 238 aa6.85□□□□□ -1.31
USP54-209ENST00000464635 A0A0G2JQZ4 141 aa6.85□□□□□ -1.31
USP54-209ENST00000464635 SPAG11AQ6PDA7 123 aa6.85□□□□□ -1.31
USP54-209ENST00000464635 LPAP08519 4548 aa6.83□□□□□ -1.32
USP54-209ENST00000464635 ATOX1O00244 68 aa6.83□□□□□ -1.32
USP54-209ENST00000464635 SPINK1P00995 79 aa6.83□□□□□ -1.32
USP54-209ENST00000464635 DSCR10P59022 87 aa6.83□□□□□ -1.32
USP54-209ENST00000464635 FAM236AA0A1B0GUQ0 79 aa6.82□□□□□ -1.32
USP54-209ENST00000464635 FAM236BA0A1B0GV22 79 aa6.82□□□□□ -1.32
USP54-209ENST00000464635 IGKV4-1P06312 121 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms