RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 C14orf144Q96I85 54 aa6.6□□□□□ -1.35
USP40-210ENST00000454354 LINC00575Q6W349 94 aa6.59□□□□□ -1.35
USP40-210ENST00000454354 A0A0G2JQZ4 141 aa6.57□□□□□ -1.36
USP40-210ENST00000454354 hADV29S1A0JD25 119 aa6.57□□□□□ -1.36
USP40-210ENST00000454354 HIST1H4GQ99525 98 aa6.57□□□□□ -1.36
USP40-210ENST00000454354 C1orf195Q5TG92 126 aa6.56□□□□□ -1.36
USP40-210ENST00000454354 Q6ZQY7 126 aa6.56□□□□□ -1.36
USP40-210ENST00000454354 IGLV8-61A0A075B6I0 122 aa6.55□□□□□ -1.36
USP40-210ENST00000454354 C9orf92A6NGG3 77 aa6.55□□□□□ -1.36
USP40-210ENST00000454354 F8WEM9 126 aa6.55□□□□□ -1.36
USP40-210ENST00000454354 SMIM6P0DI80 62 aa6.55□□□□□ -1.36
USP40-210ENST00000454354 HIGD1BQ9P298 99 aa6.55□□□□□ -1.36
USP40-210ENST00000454354 BVES-AS1Q5T3Y7 98 aa6.54□□□□□ -1.36
USP40-210ENST00000454354 C12orf57Q99622 126 aa6.54□□□□□ -1.36
USP40-210ENST00000454354 Q6JHZ5 121 aa6.53□□□□□ -1.36
USP40-210ENST00000454354 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.53□□□□□ -1.36
USP40-210ENST00000454354 PPDPFLQ8WWR9 84 aa6.53□□□□□ -1.36
USP40-210ENST00000454354 KRTAP9-2Q9BYQ4 174 aa6.53□□□□□ -1.36
USP40-210ENST00000454354 UQCR10Q9UDW1 63 aa6.53□□□□□ -1.36
USP40-210ENST00000454354 LOC105371267A0A1B0GV96 52 aa6.52□□□□□ -1.37
USP40-210ENST00000454354 TCL1BO95988 128 aa6.52□□□□□ -1.37
USP40-210ENST00000454354 PCOTHQ58A44 107 aa6.51□□□□□ -1.37
USP40-210ENST00000454354 CLEC2BQ92478 149 aa6.51□□□□□ -1.37
USP40-210ENST00000454354 TMEM238LA0A1B0GVL6 79 aa6.5□□□□□ -1.37
USP40-210ENST00000454354 A6NJY4 79 aa6.5□□□□□ -1.37
USP40-210ENST00000454354 CFC1BP0CG36 223 aa6.5□□□□□ -1.37
USP40-210ENST00000454354 CFC1P0CG37 223 aa6.5□□□□□ -1.37
USP40-210ENST00000454354 IGFL1Q6UW32 110 aa6.5□□□□□ -1.37
USP40-210ENST00000454354 A0A0B4J2C4 111 aa6.49□□□□□ -1.37
USP40-210ENST00000454354 OCIAD2Q56VL3 154 aa6.49□□□□□ -1.37
USP40-210ENST00000454354 C2orf91Q6ZV80 131 aa6.49□□□□□ -1.37
USP40-210ENST00000454354 TRBV7-7A0A0K0K1E9 115 aa6.48□□□□□ -1.37
USP40-210ENST00000454354 KRTAP19-2Q3LHN2 52 aa6.48□□□□□ -1.37
USP40-210ENST00000454354 LCE2CQ5TA81 110 aa6.48□□□□□ -1.37
USP40-210ENST00000454354 RAB37Q96AX2 223 aa6.48□□□□□ -1.37
USP40-210ENST00000454354 TSTD3H0UI37 97 aa6.47□□□□□ -1.37
USP40-210ENST00000454354 CEND1Q8N111 149 aa6.47□□□□□ -1.37
USP40-210ENST00000454354 RPL37P61927 97 aaKnown RBP6.46□□□□□ -1.38
USP40-210ENST00000454354 HSD52Q0P140 79 aa6.46□□□□□ -1.38
USP40-210ENST00000454354 H0YGX0 51 aa6.45□□□□□ -1.38
USP40-210ENST00000454354 SNHG12Q9BXW3 62 aa6.45□□□□□ -1.38
USP40-210ENST00000454354 FAM218AQ96MZ4 157 aa6.44□□□□□ -1.38
USP40-210ENST00000454354 H3BUT2 72 aa6.43□□□□□ -1.38
USP40-210ENST00000454354 A0A1B0GX51 115 aa6.42□□□□□ -1.38
USP40-210ENST00000454354 SNCGO76070 127 aa6.42□□□□□ -1.38
USP40-210ENST00000454354 Q6Q795 121 aa6.42□□□□□ -1.38
USP40-210ENST00000454354 M0R143 59 aa6.41□□□□□ -1.38
USP40-210ENST00000454354 PRO1854Q9UHT4 67 aa6.41□□□□□ -1.38
USP40-210ENST00000454354 FXYD2P54710 66 aa6.4□□□□□ -1.38
USP40-210ENST00000454354 LST1O00453 97 aa6.39□□□□□ -1.39
USP40-210ENST00000454354 NDUFV3P56181 108 aaKnown RBP6.39□□□□□ -1.39
USP40-210ENST00000454354 MT1HP80294 61 aa6.39□□□□□ -1.39
USP40-210ENST00000454354 SS18L2Q9UHA2 77 aa6.39□□□□□ -1.39
USP40-210ENST00000454354 GHRHP01286 108 aa6.38□□□□□ -1.39
USP40-210ENST00000454354 TEN1Q86WV5 123 aa6.38□□□□□ -1.39
USP40-210ENST00000454354 TRIAP1O43715 76 aa6.37□□□□□ -1.39
USP40-210ENST00000454354 FLGP20930 4061 aaPredicted RBP6.36□□□□□ -1.39
USP40-210ENST00000454354 COX6CP09669 75 aa6.36□□□□□ -1.39
USP40-210ENST00000454354 H3BMG7 143 aa6.35□□□□□ -1.39
USP40-210ENST00000454354 PSMB2P49721 201 aa6.35□□□□□ -1.39
USP40-210ENST00000454354 Q75L30 129 aa6.35□□□□□ -1.39
USP40-210ENST00000454354 OBSCN-AS1Q96MR7 158 aa6.35□□□□□ -1.39
USP40-210ENST00000454354 A0A087WSZ3 146 aa6.33□□□□□ -1.4
USP40-210ENST00000454354 FABP2P12104 132 aa6.33□□□□□ -1.4
USP40-210ENST00000454354 KRTAP9-6A0A140TA67 174 aa6.32□□□□□ -1.4
USP40-210ENST00000454354 K7ERJ3 54 aa6.32□□□□□ -1.4
USP40-210ENST00000454354 BATFQ16520 125 aa6.32□□□□□ -1.4
USP40-210ENST00000454354 Q96NJ1 140 aa6.32□□□□□ -1.4
USP40-210ENST00000454354 A0A1W2PNM2 257 aa6.31□□□□□ -1.4
USP40-210ENST00000454354 H3BQ85 93 aa6.31□□□□□ -1.4
USP40-210ENST00000454354 DNAL4O96015 105 aa6.31□□□□□ -1.4
USP40-210ENST00000454354 SCGB1C2P0DMR2 95 aa6.3□□□□□ -1.4
USP40-210ENST00000454354 ATP11AUNQ6ZP68 121 aa6.3□□□□□ -1.4
USP40-210ENST00000454354 ORMDL1Q9P0S3 153 aa6.3□□□□□ -1.4
USP40-210ENST00000454354 C20orf166-AS1Q96NR2 134 aa6.29□□□□□ -1.4
USP40-210ENST00000454354 A8MUU9 505 aa6.28□□□□□ -1.4
USP40-210ENST00000454354 LORP23490 312 aaPredicted RBP6.28□□□□□ -1.4
USP40-210ENST00000454354 COX6B2Q6YFQ2 88 aa6.28□□□□□ -1.4
USP40-210ENST00000454354 TRBV7-4A0A0J9YYF1 115 aa6.27□□□□□ -1.41
USP40-210ENST00000454354 TMEM256-PLSCR3K7ERE1 68 aa6.27□□□□□ -1.41
USP40-210ENST00000454354 KRTAP10-6P60371 365 aaPredicted RBP6.27□□□□□ -1.41
USP40-210ENST00000454354 LYRM7Q5U5X0 104 aa6.26□□□□□ -1.41
USP40-210ENST00000454354 ANKRD29Q8N6D5 301 aa6.26□□□□□ -1.41
USP40-210ENST00000454354 PCP4L1A6NKN8 68 aa6.24□□□□□ -1.41
USP40-210ENST00000454354 TRACP01848 142 aa6.24□□□□□ -1.41
USP40-210ENST00000454354 UBE2V1Q13404 147 aa6.24□□□□□ -1.41
USP40-210ENST00000454354 A0A1B0GV72 72 aa6.23□□□□□ -1.41
USP40-210ENST00000454354 SIGMAR1Q99720 223 aa6.23□□□□□ -1.41
USP40-210ENST00000454354 M0R2T5 61 aa6.22□□□□□ -1.41
USP40-210ENST00000454354 LCE2BO14633 110 aa6.22□□□□□ -1.41
USP40-210ENST00000454354 CCKP06307 115 aa6.22□□□□□ -1.41
USP40-210ENST00000454354 DSCR10P59022 87 aa6.22□□□□□ -1.41
USP40-210ENST00000454354 IGKV4-1P06312 121 aa6.21□□□□□ -1.42
USP40-210ENST00000454354 LINC00472Q9H8W2 130 aa6.21□□□□□ -1.42
USP40-210ENST00000454354 KRTAP16-1A8MUX0 517 aa6.2□□□□□ -1.42
USP40-210ENST00000454354 ATXN8Q156A1 80 aa6.2□□□□□ -1.42
USP40-210ENST00000454354 COL5A1-AS1Q5SY13 56 aa6.2□□□□□ -1.42
USP40-210ENST00000454354 C9orf118A6NHY6 69 aa6.19□□□□□ -1.42
USP40-210ENST00000454354 LINC00313P59037 77 aa6.19□□□□□ -1.42
USP40-210ENST00000454354 NAA38Q9BRA0 125 aaKnown RBP6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms