RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 LAMTOR3Q9UHA4 124 aa9.34□□□□□ -0.91
USP40-206ENST00000443711 TCL1BO95988 128 aa9.33□□□□□ -0.92
USP40-206ENST00000443711 KRTAP13-2Q52LG2 175 aa9.33□□□□□ -0.92
USP40-206ENST00000443711 LCE2DQ5TA82 110 aaPredicted RBP9.33□□□□□ -0.92
USP40-206ENST00000443711 TYMSOSQ8TAI1 123 aa9.32□□□□□ -0.92
USP40-206ENST00000443711 IGLV9-49A0A0B4J1Y8 123 aa9.31□□□□□ -0.92
USP40-206ENST00000443711 H3BQ85 93 aa9.31□□□□□ -0.92
USP40-206ENST00000443711 C3orf22Q8N5N4 141 aa9.31□□□□□ -0.92
USP40-206ENST00000443711 ORMDL1Q9P0S3 153 aa9.31□□□□□ -0.92
USP40-206ENST00000443711 J3QL48 77 aa9.3□□□□□ -0.92
USP40-206ENST00000443711 MT1HL1P0DM35 61 aa9.3□□□□□ -0.92
USP40-206ENST00000443711 SMIM29Q86T20 159 aa9.3□□□□□ -0.92
USP40-206ENST00000443711 FAT3Q8TDW7 4589 aa9.29□□□□□ -0.92
USP40-206ENST00000443711 LRP1Q07954 4544 aaKnown RBP9.28□□□□□ -0.92
USP40-206ENST00000443711 C9orf153Q5TBE3 101 aa9.28□□□□□ -0.92
USP40-206ENST00000443711 SSBP3-AS1Q7Z2R9 100 aa9.28□□□□□ -0.92
USP40-206ENST00000443711 MYCBP2O75592 4640 aa9.28□□□□□ -0.92
USP40-206ENST00000443711 F8WEM9 126 aa9.27□□□□□ -0.93
USP40-206ENST00000443711 MOBPQ13875 183 aa9.27□□□□□ -0.93
USP40-206ENST00000443711 TMEM256-PLSCR3K7ERE1 68 aa9.26□□□□□ -0.93
USP40-206ENST00000443711 Q8NBF4 154 aa9.26□□□□□ -0.93
USP40-206ENST00000443711 SPCS1Q9Y6A9 102 aa9.26□□□□□ -0.93
USP40-206ENST00000443711 BAALC-AS2P0C853 105 aa9.25□□□□□ -0.93
USP40-206ENST00000443711 NDUFV3P56181 108 aaKnown RBP9.24□□□□□ -0.93
USP40-206ENST00000443711 C9JAW5 83 aa9.22□□□□□ -0.93
USP40-206ENST00000443711 UBE2V1Q13404 147 aa9.22□□□□□ -0.93
USP40-206ENST00000443711 H3BMG7 143 aa9.21□□□□□ -0.94
USP40-206ENST00000443711 LINC00304Q8N9R0 145 aa9.21□□□□□ -0.94
USP40-206ENST00000443711 DMBT1Q9UGM3 2413 aaPredicted RBP9.2□□□□□ -0.94
USP40-206ENST00000443711 IGLV8-61A0A075B6I0 122 aa9.2□□□□□ -0.94
USP40-206ENST00000443711 C4orf48Q5BLP8 95 aa9.2□□□□□ -0.94
USP40-206ENST00000443711 K7EP34 96 aa9.19□□□□□ -0.94
USP40-206ENST00000443711 Q6JHZ5 121 aa9.19□□□□□ -0.94
USP40-206ENST00000443711 SPAG11AQ6PDA7 123 aa9.18□□□□□ -0.94
USP40-206ENST00000443711 ANKRD29Q8N6D5 301 aa9.18□□□□□ -0.94
USP40-206ENST00000443711 TNXBP22105 4242 aa9.17□□□□□ -0.94
USP40-206ENST00000443711 GTF2H5Q6ZYL4 71 aa9.17□□□□□ -0.94
USP40-206ENST00000443711 H3BT86 120 aa9.15□□□□□ -0.94
USP40-206ENST00000443711 IGFL1Q6UW32 110 aa9.14□□□□□ -0.95
USP40-206ENST00000443711 A0A0G2JQZ4 141 aa9.13□□□□□ -0.95
USP40-206ENST00000443711 SPINK1P00995 79 aa9.13□□□□□ -0.95
USP40-206ENST00000443711 CD164Q04900 197 aa9.13□□□□□ -0.95
USP40-206ENST00000443711 MTURNQ8N3F0 131 aa9.13□□□□□ -0.95
USP40-206ENST00000443711 RBM3P98179 157 aaKnown RBP9.12□□□□□ -0.95
USP40-206ENST00000443711 A0A1B0GV72 72 aa9.11□□□□□ -0.95
USP40-206ENST00000443711 JMJD7-PLA2G4BH0Y9G9 81 aa9.11□□□□□ -0.95
USP40-206ENST00000443711 HRCT1Q6UXD1 115 aa9.11□□□□□ -0.95
USP40-206ENST00000443711 RPS29P62273 56 aaKnown RBP9.08□□□□□ -0.96
USP40-206ENST00000443711 DSCR8Q96T75 97 aa9.08□□□□□ -0.96
USP40-206ENST00000443711 PRO0461Q9UI25 63 aa9.08□□□□□ -0.96
USP40-206ENST00000443711 TRBV7-4A0A0J9YYF1 115 aa9.06□□□□□ -0.96
USP40-206ENST00000443711 A0A1B0GV90 55 aa9.06□□□□□ -0.96
USP40-206ENST00000443711 SMCPP49901 116 aaPredicted RBP9.06□□□□□ -0.96
USP40-206ENST00000443711 TEN1Q86WV5 123 aa9.06□□□□□ -0.96
USP40-206ENST00000443711 HERC1Q15751 4861 aa9.05□□□□□ -0.96
USP40-206ENST00000443711 F8W1H4 67 aa9.05□□□□□ -0.96
USP40-206ENST00000443711 Q6Q795 121 aa9.05□□□□□ -0.96
USP40-206ENST00000443711 OBSCN-AS1Q96MR7 158 aa9.05□□□□□ -0.96
USP40-206ENST00000443711 LIMD2Q9BT23 127 aa9.05□□□□□ -0.96
USP40-206ENST00000443711 TRBV7-7A0A0K0K1E9 115 aa9.03□□□□□ -0.96
USP40-206ENST00000443711 PDE6GP18545 87 aa9.03□□□□□ -0.96
USP40-206ENST00000443711 LOC110117498A0A087WWA1 95 aa9.02□□□□□ -0.97
USP40-206ENST00000443711 A0A1W2PNM2 257 aa9.02□□□□□ -0.97
USP40-206ENST00000443711 CCKP06307 115 aa9.02□□□□□ -0.97
USP40-206ENST00000443711 Q5XG85 94 aa9.01□□□□□ -0.97
USP40-206ENST00000443711 C14orf132Q9NPU4 83 aa9.01□□□□□ -0.97
USP40-206ENST00000443711 Q6ZQT0 140 aa8.99□□□□□ -0.97
USP40-206ENST00000443711 VPS25Q9BRG1 176 aa8.99□□□□□ -0.97
USP40-206ENST00000443711 C21orf62-AS1Q17RA5 79 aa8.98□□□□□ -0.97
USP40-206ENST00000443711 A0A087WSZ3 146 aa8.96□□□□□ -0.98
USP40-206ENST00000443711 RETNLBQ9BQ08 111 aa8.96□□□□□ -0.98
USP40-206ENST00000443711 SS18L2Q9UHA2 77 aa8.96□□□□□ -0.98
USP40-206ENST00000443711 ETDBQ3ZM63 59 aa8.94□□□□□ -0.98
USP40-206ENST00000443711 ASB16-AS1Q495Z4 193 aa8.94□□□□□ -0.98
USP40-206ENST00000443711 A0A1B0GW54 56 aa8.93□□□□□ -0.98
USP40-206ENST00000443711 PRR4Q16378 134 aa8.93□□□□□ -0.98
USP40-206ENST00000443711 C1orf195Q5TG92 126 aa8.91□□□□□ -0.98
USP40-206ENST00000443711 FP248Q71RG6 208 aaPredicted RBP8.91□□□□□ -0.98
USP40-206ENST00000443711 IGLV7-46A0A075B6I9 117 aa8.87□□□□□ -0.99
USP40-206ENST00000443711 Q96NJ1 140 aa8.82□□□□□ -1
USP40-206ENST00000443711 KRTAP3-3Q9BYR6 98 aa8.82□□□□□ -1
USP40-206ENST00000443711 KRTAP3-2Q9BYR7 98 aa8.82□□□□□ -1
USP40-206ENST00000443711 LINC00472Q9H8W2 130 aa8.81□□□□□ -1
USP40-206ENST00000443711 NREPQ16612 68 aa8.8□□□□□ -1
USP40-206ENST00000443711 IGKV4-1P06312 121 aa8.78□□□□□ -1
USP40-206ENST00000443711 J3KT08 172 aa8.77□□□□□ -1.01
USP40-206ENST00000443711 TPRXLQ17RH7 258 aa8.77□□□□□ -1.01
USP40-206ENST00000443711 DEFB116Q30KQ4 102 aa8.77□□□□□ -1.01
USP40-206ENST00000443711 SIGMAR1Q99720 223 aa8.76□□□□□ -1.01
USP40-206ENST00000443711 KRTAP13-3Q3SY46 172 aa8.75□□□□□ -1.01
USP40-206ENST00000443711 LINC00846Q9NV44 126 aa8.75□□□□□ -1.01
USP40-206ENST00000443711 Q6ZVQ6 151 aa8.73□□□□□ -1.01
USP40-206ENST00000443711 UBL5Q9BZL1 73 aa8.73□□□□□ -1.01
USP40-206ENST00000443711 HMCN2Q8NDA2 5059 aa8.72□□□□□ -1.01
USP40-206ENST00000443711 ACYP1P07311 99 aa8.72□□□□□ -1.01
USP40-206ENST00000443711 CDIP1Q9H305 208 aa8.7□□□□□ -1.02
USP40-206ENST00000443711 FAM240AA0A1B0GVK7 77 aa8.69□□□□□ -1.02
USP40-206ENST00000443711 C9orf92A6NGG3 77 aa8.69□□□□□ -1.02
USP40-206ENST00000443711 BPY2O14599 106 aa8.68□□□□□ -1.02
USP40-206ENST00000443711 NDUFB1O75438 58 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms