RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 HIST1H2BBP33778 126 aa4.34□□□□□ -1.71
CD44-211ENST00000442151 HIST1H2BDP58876 126 aa4.34□□□□□ -1.71
CD44-211ENST00000442151 ELOF1P60002 83 aaKnown RBP4.34□□□□□ -1.71
CD44-211ENST00000442151 HIST1H2BCP62807 126 aa4.34□□□□□ -1.71
CD44-211ENST00000442151 VAMP3Q15836 100 aa4.34□□□□□ -1.71
CD44-211ENST00000442151 HIST2H2BEQ16778 126 aa4.34□□□□□ -1.71
CD44-211ENST00000442151 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.34□□□□□ -1.71
CD44-211ENST00000442151 ST20-AS1Q8NBB2 130 aa4.34□□□□□ -1.71
CD44-211ENST00000442151 HIST1H2BHQ93079 126 aa4.34□□□□□ -1.71
CD44-211ENST00000442151 HIST1H2BNQ99877 126 aa4.34□□□□□ -1.71
CD44-211ENST00000442151 HIST1H2BMQ99879 126 aa4.34□□□□□ -1.71
CD44-211ENST00000442151 MUC17Q685J3 4493 aa4.34□□□□□ -1.72
CD44-211ENST00000442151 FAT4Q6V0I7 4981 aa4.33□□□□□ -1.72
CD44-211ENST00000442151 TRAV13-2A0A0B4J235 113 aa4.33□□□□□ -1.72
CD44-211ENST00000442151 A6NDN8 102 aa4.33□□□□□ -1.72
CD44-211ENST00000442151 KRTDAPP60985 99 aa4.33□□□□□ -1.72
CD44-211ENST00000442151 C6orf99Q4VX62 202 aa4.33□□□□□ -1.72
CD44-211ENST00000442151 C3orf79P0CE67 100 aa4.32□□□□□ -1.72
CD44-211ENST00000442151 DEFB105AQ8NG35 78 aa4.32□□□□□ -1.72
CD44-211ENST00000442151 LITAFQ99732 161 aa4.32□□□□□ -1.72
CD44-211ENST00000442151 COA6Q5JTJ3 125 aaKnown RBP4.32□□□□□ -1.72
CD44-211ENST00000442151 TCL1BO95988 128 aa4.31□□□□□ -1.72
CD44-211ENST00000442151 S100A2P29034 98 aa4.31□□□□□ -1.72
CD44-211ENST00000442151 Q5XG85 94 aa4.31□□□□□ -1.72
CD44-211ENST00000442151 HRCT1Q6UXD1 115 aa4.3□□□□□ -1.72
CD44-211ENST00000442151 C12orf57Q99622 126 aa4.3□□□□□ -1.72
CD44-211ENST00000442151 HSBP1L1C9JCN9 74 aa4.3□□□□□ -1.72
CD44-211ENST00000442151 F8WEM9 126 aa4.3□□□□□ -1.72
CD44-211ENST00000442151 SNCGO76070 127 aa4.29□□□□□ -1.72
CD44-211ENST00000442151 Q1RN00 199 aa4.28□□□□□ -1.72
CD44-211ENST00000442151 MUSTN1Q8IVN3 82 aa4.28□□□□□ -1.72
CD44-211ENST00000442151 HIST3H2BBQ8N257 126 aa4.28□□□□□ -1.72
CD44-211ENST00000442151 IGLV5-48A0A075B6I7 105 aa4.28□□□□□ -1.72
CD44-211ENST00000442151 Q6JHZ5 121 aa4.27□□□□□ -1.73
CD44-211ENST00000442151 TTTY13Q9BZ97 58 aa4.26□□□□□ -1.73
CD44-211ENST00000442151 KRTAP23-1A1A580 65 aa4.25□□□□□ -1.73
CD44-211ENST00000442151 HIST1H2BLQ99880 126 aa4.25□□□□□ -1.73
CD44-211ENST00000442151 IGLV8-61A0A075B6I0 122 aa4.25□□□□□ -1.73
CD44-211ENST00000442151 hADV29S1A0JD25 119 aa4.25□□□□□ -1.73
CD44-211ENST00000442151 CFC1BP0CG36 223 aa4.25□□□□□ -1.73
CD44-211ENST00000442151 SMIM11BQ8TCY0 68 aa4.25□□□□□ -1.73
CD44-211ENST00000442151 PPDPFLQ8WWR9 84 aa4.25□□□□□ -1.73
CD44-211ENST00000442151 C9orf92A6NGG3 77 aa4.24□□□□□ -1.73
CD44-211ENST00000442151 UBE2V1Q13404 147 aa4.24□□□□□ -1.73
CD44-211ENST00000442151 PCOTHQ58A44 107 aa4.24□□□□□ -1.73
CD44-211ENST00000442151 PYY3Q5JQD4 70 aa4.24□□□□□ -1.73
CD44-211ENST00000442151 SMIM29Q86T20 159 aa4.24□□□□□ -1.73
CD44-211ENST00000442151 BVES-AS1Q5T3Y7 98 aa4.23□□□□□ -1.73
CD44-211ENST00000442151 C1orf195Q5TG92 126 aa4.23□□□□□ -1.73
CD44-211ENST00000442151 ATOH7Q8N100 152 aa4.23□□□□□ -1.73
CD44-211ENST00000442151 LINC00575Q6W349 94 aa4.23□□□□□ -1.73
CD44-211ENST00000442151 PCP2Q8IVA1 136 aa4.23□□□□□ -1.73
CD44-211ENST00000442151 TSTD3H0UI37 97 aa4.22□□□□□ -1.73
CD44-211ENST00000442151 OCIAD2Q56VL3 154 aa4.22□□□□□ -1.73
CD44-211ENST00000442151 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.22□□□□□ -1.73
CD44-211ENST00000442151 SNHG12Q9BXW3 62 aa4.22□□□□□ -1.73
CD44-211ENST00000442151 PCP4L1A6NKN8 68 aa4.21□□□□□ -1.74
CD44-211ENST00000442151 FSIP2Q5CZC0 6907 aa4.21□□□□□ -1.74
CD44-211ENST00000442151 RPL37P61927 97 aaKnown RBP4.21□□□□□ -1.74
CD44-211ENST00000442151 KRTAP4-1Q9BYQ7 146 aa4.21□□□□□ -1.74
CD44-211ENST00000442151 CLEC2BQ92478 149 aa4.2□□□□□ -1.74
CD44-211ENST00000442151 HIST1H4GQ99525 98 aa4.2□□□□□ -1.74
CD44-211ENST00000442151 Q6ZQY7 126 aa4.19□□□□□ -1.74
CD44-211ENST00000442151 SS18L2Q9UHA2 77 aa4.19□□□□□ -1.74
CD44-211ENST00000442151 H0YGX0 51 aa4.18□□□□□ -1.74
CD44-211ENST00000442151 COX6B2Q6YFQ2 88 aa4.18□□□□□ -1.74
CD44-211ENST00000442151 ATP11AUNQ6ZP68 121 aa4.18□□□□□ -1.74
CD44-211ENST00000442151 TRBV7-7A0A0K0K1E9 115 aa4.18□□□□□ -1.74
CD44-211ENST00000442151 LST1O00453 97 aa4.18□□□□□ -1.74
CD44-211ENST00000442151 DLEU1O43261 78 aa4.17□□□□□ -1.74
CD44-211ENST00000442151 KRTAP10-6P60371 365 aaPredicted RBP4.17□□□□□ -1.74
CD44-211ENST00000442151 KRTAP15-1Q3LI76 137 aa4.17□□□□□ -1.74
CD44-211ENST00000442151 RAB37Q96AX2 223 aa4.17□□□□□ -1.74
CD44-211ENST00000442151 H3BQ85 93 aa4.16□□□□□ -1.74
CD44-211ENST00000442151 M0R2T5 61 aa4.16□□□□□ -1.74
CD44-211ENST00000442151 COX8AP10176 69 aa4.16□□□□□ -1.74
CD44-211ENST00000442151 IGFL1Q6UW32 110 aa4.16□□□□□ -1.74
CD44-211ENST00000442151 A0A1B0GX51 115 aa4.15□□□□□ -1.75
CD44-211ENST00000442151 Q75L30 129 aa4.14□□□□□ -1.75
CD44-211ENST00000442151 TEN1Q86WV5 123 aa4.14□□□□□ -1.75
CD44-211ENST00000442151 VAMP8Q9BV40 100 aa4.14□□□□□ -1.75
CD44-211ENST00000442151 A0A0G2JQZ4 141 aa4.14□□□□□ -1.75
CD44-211ENST00000442151 Q6Q795 121 aa4.14□□□□□ -1.75
CD44-211ENST00000442151 HIGD1BQ9P298 99 aa4.14□□□□□ -1.75
CD44-211ENST00000442151 MT1HP80294 61 aa4.13□□□□□ -1.75
CD44-211ENST00000442151 TRBV20-1A0A075B6N2 111 aa4.12□□□□□ -1.75
CD44-211ENST00000442151 A0A0B4J2C4 111 aa4.12□□□□□ -1.75
CD44-211ENST00000442151 KRTAP5-9P26371 169 aa4.11□□□□□ -1.75
CD44-211ENST00000442151 NDUFV3P56181 108 aaKnown RBP4.11□□□□□ -1.75
CD44-211ENST00000442151 C14orf144Q96I85 54 aa4.11□□□□□ -1.75
CD44-211ENST00000442151 PAM16Q9Y3D7 125 aa4.11□□□□□ -1.75
CD44-211ENST00000442151 CFC1P0CG37 223 aa4.11□□□□□ -1.75
CD44-211ENST00000442151 OBSCN-AS1Q96MR7 158 aa4.11□□□□□ -1.75
CD44-211ENST00000442151 Q96NJ1 140 aa4.11□□□□□ -1.75
CD44-211ENST00000442151 UQCR10Q9UDW1 63 aa4.11□□□□□ -1.75
CD44-211ENST00000442151 KRTAP19-2Q3LHN2 52 aa4.1□□□□□ -1.75
CD44-211ENST00000442151 CRCT1Q9UGL9 99 aa4.1□□□□□ -1.75
CD44-211ENST00000442151 PRO1854Q9UHT4 67 aa4.1□□□□□ -1.75
CD44-211ENST00000442151 H3BMG7 143 aa4.09□□□□□ -1.75
CD44-211ENST00000442151 M0R143 59 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms