RNA–Protein interactions for RNA: ENST00000441542.6

HDAC9-214, Transcript of histone deacetylase 9, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HDAC9, Length 3,210 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-214ENST00000441542 ATP11AUNQ6ZP68 121 aa4.87□□□□□ -1.63
HDAC9-214ENST00000441542 ZCCHC13Q8WW36 166 aaKnown RBP4.87□□□□□ -1.63
HDAC9-214ENST00000441542 SPAG11AQ6PDA7 123 aa4.86□□□□□ -1.63
HDAC9-214ENST00000441542 Q9BRP9 147 aa4.86□□□□□ -1.63
HDAC9-214ENST00000441542 MGAM2Q2M2H8 2515 aa4.86□□□□□ -1.63
HDAC9-214ENST00000441542 A6NN06 94 aa4.85□□□□□ -1.63
HDAC9-214ENST00000441542 Q8N9P0 234 aaPredicted RBP4.85□□□□□ -1.63
HDAC9-214ENST00000441542 FBN1P35555 2871 aaKnown RBP4.85□□□□□ -1.63
HDAC9-214ENST00000441542 TNP2Q05952 138 aa4.85□□□□□ -1.63
HDAC9-214ENST00000441542 C15orf56Q8N910 161 aa4.85□□□□□ -1.63
HDAC9-214ENST00000441542 GVQW2A0A096LPI5 108 aaPredicted RBP4.85□□□□□ -1.63
HDAC9-214ENST00000441542 SPART-AS1P0CW21 52 aa4.85□□□□□ -1.63
HDAC9-214ENST00000441542 LINC00476Q8WZB0 136 aa4.85□□□□□ -1.63
HDAC9-214ENST00000441542 KRTAP1-3Q8IUG1 177 aa4.84□□□□□ -1.63
HDAC9-214ENST00000441542 PRR34Q9NV39 138 aa4.84□□□□□ -1.63
HDAC9-214ENST00000441542 IGLV5-48A0A075B6I7 105 aa4.84□□□□□ -1.63
HDAC9-214ENST00000441542 PRLHP81277 87 aa4.84□□□□□ -1.63
HDAC9-214ENST00000441542 NDUFB1O75438 58 aa4.84□□□□□ -1.64
HDAC9-214ENST00000441542 Q6ZRX8 168 aa4.83□□□□□ -1.64
HDAC9-214ENST00000441542 IGKV2-24A0A0C4DH68 120 aa4.83□□□□□ -1.64
HDAC9-214ENST00000441542 CASC2Q6XLA1 102 aa4.83□□□□□ -1.64
HDAC9-214ENST00000441542 CYP4F30PQ9H0H9 118 aa4.83□□□□□ -1.64
HDAC9-214ENST00000441542 IGHV6-1A0A0B4J1U7 121 aa4.82□□□□□ -1.64
HDAC9-214ENST00000441542 COA5Q86WW8 74 aa4.82□□□□□ -1.64
HDAC9-214ENST00000441542 PRAC1Q96KF2 57 aa4.82□□□□□ -1.64
HDAC9-214ENST00000441542 DHRS4-AS1Q9P1J3 65 aa4.82□□□□□ -1.64
HDAC9-214ENST00000441542 ZNF706Q9Y5V0 76 aaPredicted RBP4.82□□□□□ -1.64
HDAC9-214ENST00000441542 TENM1Q9UKZ4 2725 aa4.81□□□□□ -1.64
HDAC9-214ENST00000441542 LIMD2Q9BT23 127 aa4.81□□□□□ -1.64
HDAC9-214ENST00000441542 KCNQ1DNQ9H478 68 aa4.81□□□□□ -1.64
HDAC9-214ENST00000441542 NOTCH1P46531 2555 aa4.81□□□□□ -1.64
HDAC9-214ENST00000441542 CASC10Q5T4H9 136 aa4.81□□□□□ -1.64
HDAC9-214ENST00000441542 SRRM2Q9UQ35 2752 aaKnown RBP4.81□□□□□ -1.64
HDAC9-214ENST00000441542 LCE6AA0A183 80 aa4.8□□□□□ -1.64
HDAC9-214ENST00000441542 IGFL1Q6UW32 110 aa4.8□□□□□ -1.64
HDAC9-214ENST00000441542 NOTCH2NLQ7Z3S9 236 aa4.8□□□□□ -1.64
HDAC9-214ENST00000441542 Q8NAQ8 132 aa4.79□□□□□ -1.64
HDAC9-214ENST00000441542 KRTAP10-3P60369 221 aa4.79□□□□□ -1.64
HDAC9-214ENST00000441542 SPINK7P58062 85 aa4.78□□□□□ -1.64
HDAC9-214ENST00000441542 MOBPQ13875 183 aa4.77□□□□□ -1.65
HDAC9-214ENST00000441542 SPRR4Q96PI1 79 aa4.77□□□□□ -1.65
HDAC9-214ENST00000441542 IGLV1-50A0A075B6I6 118 aa4.76□□□□□ -1.65
HDAC9-214ENST00000441542 KRTAP1-1Q07627 177 aa4.76□□□□□ -1.65
HDAC9-214ENST00000441542 LOC101927531A0A1B0GV80 90 aa4.76□□□□□ -1.65
HDAC9-214ENST00000441542 KRTAP26-1Q6PEX3 210 aa4.76□□□□□ -1.65
HDAC9-214ENST00000441542 ADM2Q7Z4H4 148 aa4.76□□□□□ -1.65
HDAC9-214ENST00000441542 TRRAPQ9Y4A5 3859 aa4.75□□□□□ -1.65
HDAC9-214ENST00000441542 CNBPP62633 177 aaKnown RBP4.74□□□□□ -1.65
HDAC9-214ENST00000441542 REG3GQ6UW15 175 aa4.74□□□□□ -1.65
HDAC9-214ENST00000441542 TENM3Q9P273 2699 aa4.74□□□□□ -1.65
HDAC9-214ENST00000441542 DNAH3Q8TD57 4116 aa4.74□□□□□ -1.65
HDAC9-214ENST00000441542 KRTAP7-1Q8IUC3 87 aa4.73□□□□□ -1.65
HDAC9-214ENST00000441542 CDC42SE1Q9NRR8 79 aa4.73□□□□□ -1.65
HDAC9-214ENST00000441542 ANK3Q12955 4377 aaKnown RBP4.73□□□□□ -1.65
HDAC9-214ENST00000441542 SEC61BP60468 96 aaKnown RBP4.72□□□□□ -1.65
HDAC9-214ENST00000441542 DNHD1Q96M86 4753 aa4.72□□□□□ -1.65
HDAC9-214ENST00000441542 KRTAP4-16G5E9R7 235 aaPredicted RBP4.72□□□□□ -1.65
HDAC9-214ENST00000441542 CSMD3Q7Z407 3707 aa4.71□□□□□ -1.66
HDAC9-214ENST00000441542 DEFB131BA0A096LNP1 70 aa4.7□□□□□ -1.66
HDAC9-214ENST00000441542 KRTAP29-1A8MX34 341 aaPredicted RBP4.7□□□□□ -1.66
HDAC9-214ENST00000441542 IGLV9-49A0A0B4J1Y8 123 aa4.7□□□□□ -1.66
HDAC9-214ENST00000441542 SPANXA2-OT1Q8N9U9 137 aa4.7□□□□□ -1.66
HDAC9-214ENST00000441542 CHTF8P0CG12 524 aa4.7□□□□□ -1.66
HDAC9-214ENST00000441542 ASB16-AS1Q495Z4 193 aa4.7□□□□□ -1.66
HDAC9-214ENST00000441542 CDK2AP2O75956 126 aa4.69□□□□□ -1.66
HDAC9-214ENST00000441542 C9orf163Q8N9P6 203 aa4.69□□□□□ -1.66
HDAC9-214ENST00000441542 A0A1B0GW54 56 aa4.69□□□□□ -1.66
HDAC9-214ENST00000441542 A8MWP4 228 aa4.69□□□□□ -1.66
HDAC9-214ENST00000441542 KRTAP24-1Q3LI83 254 aa4.68□□□□□ -1.66
HDAC9-214ENST00000441542 A0A087X002 238 aa4.68□□□□□ -1.66
HDAC9-214ENST00000441542 SPRR1AP35321 89 aa4.68□□□□□ -1.66
HDAC9-214ENST00000441542 RETNLBQ9BQ08 111 aa4.68□□□□□ -1.66
HDAC9-214ENST00000441542 COL7A1Q02388 2944 aa4.68□□□□□ -1.66
HDAC9-214ENST00000441542 K7EIL1 84 aa4.67□□□□□ -1.66
HDAC9-214ENST00000441542 IGLV7-46A0A075B6I9 117 aa4.67□□□□□ -1.66
HDAC9-214ENST00000441542 HRES1P13985 223 aa4.67□□□□□ -1.66
HDAC9-214ENST00000441542 PLA2G2DQ9UNK4 145 aa4.67□□□□□ -1.66
HDAC9-214ENST00000441542 TGP01266 2768 aa4.67□□□□□ -1.66
HDAC9-214ENST00000441542 LINC01556Q5JQF7 62 aa4.66□□□□□ -1.66
HDAC9-214ENST00000441542 SPINK6Q6UWN8 80 aa4.66□□□□□ -1.66
HDAC9-214ENST00000441542 MMP24-AS1A0A0U1RRL7 71 aa4.66□□□□□ -1.66
HDAC9-214ENST00000441542 LINC01558Q9Y6Z2 57 aa4.65□□□□□ -1.67
HDAC9-214ENST00000441542 H3BPC8 53 aa4.65□□□□□ -1.67
HDAC9-214ENST00000441542 KRTAP11-1Q8IUC1 163 aa4.64□□□□□ -1.67
HDAC9-214ENST00000441542 IGLV8-61A0A075B6I0 122 aa4.64□□□□□ -1.67
HDAC9-214ENST00000441542 LINC00472Q9H8W2 130 aa4.63□□□□□ -1.67
HDAC9-214ENST00000441542 IGLV5-37A0A075B6J1 123 aa4.63□□□□□ -1.67
HDAC9-214ENST00000441542 ANAPC11Q9NYG5 84 aa4.63□□□□□ -1.67
HDAC9-214ENST00000441542 TLX1NBP0CAT3 122 aa4.61□□□□□ -1.67
HDAC9-214ENST00000441542 C8orf17Q9NRJ1 99 aa4.6□□□□□ -1.67
HDAC9-214ENST00000441542 FBN3Q75N90 2809 aa4.58□□□□□ -1.68
HDAC9-214ENST00000441542 DNAH10OSP0CZ25 163 aa4.58□□□□□ -1.68
HDAC9-214ENST00000441542 KRTAP10-11P60412 298 aa4.57□□□□□ -1.68
HDAC9-214ENST00000441542 ANK2Q01484 3957 aa4.57□□□□□ -1.68
HDAC9-214ENST00000441542 A0A1B0GU69 56 aa4.57□□□□□ -1.68
HDAC9-214ENST00000441542 CSAG1Q6PB30 78 aa4.56□□□□□ -1.68
HDAC9-214ENST00000441542 FLG2Q5D862 2391 aaPredicted RBP4.56□□□□□ -1.68
HDAC9-214ENST00000441542 H3BNG1 76 aa4.55□□□□□ -1.68
HDAC9-214ENST00000441542 KRTAP16-1A8MUX0 517 aa4.55□□□□□ -1.68
HDAC9-214ENST00000441542 Q5W150 140 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms