RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 UBE2DNLQ8IWF7 75 aa9.05□□□□□ -0.96
LIG1-202ENST00000427526 DNAH10Q8IVF4 4471 aa9.04□□□□□ -0.96
LIG1-202ENST00000427526 CSMD3Q7Z407 3707 aa9.03□□□□□ -0.96
LIG1-202ENST00000427526 DSCR10P59022 87 aa9.02□□□□□ -0.97
LIG1-202ENST00000427526 A0A096LNI7 61 aa9.01□□□□□ -0.97
LIG1-202ENST00000427526 C16orf90A8MZG2 172 aa9□□□□□ -0.97
LIG1-202ENST00000427526 CNBPP62633 177 aaKnown RBP9□□□□□ -0.97
LIG1-202ENST00000427526 LINC00476Q8WZB0 136 aa8.99□□□□□ -0.97
LIG1-202ENST00000427526 A0A1W2PNN7 141 aa8.99□□□□□ -0.97
LIG1-202ENST00000427526 C4orf48Q5BLP8 95 aa8.98□□□□□ -0.97
LIG1-202ENST00000427526 MEGF8Q7Z7M0 2845 aa8.98□□□□□ -0.97
LIG1-202ENST00000427526 LCE6AA0A183 80 aa8.97□□□□□ -0.97
LIG1-202ENST00000427526 DNAH7Q8WXX0 4024 aa8.97□□□□□ -0.97
LIG1-202ENST00000427526 K7EQZ3 153 aa8.97□□□□□ -0.97
LIG1-202ENST00000427526 PSCAO43653 123 aa8.97□□□□□ -0.97
LIG1-202ENST00000427526 IGFL1Q6UW32 110 aa8.97□□□□□ -0.97
LIG1-202ENST00000427526 HIGD2AQ9BW72 106 aa8.97□□□□□ -0.97
LIG1-202ENST00000427526 IGKV2-24A0A0C4DH68 120 aa8.96□□□□□ -0.97
LIG1-202ENST00000427526 A0A0G2JQZ4 141 aa8.96□□□□□ -0.97
LIG1-202ENST00000427526 FAM30AQ9NZY2 134 aa8.96□□□□□ -0.97
LIG1-202ENST00000427526 DNHD1Q96M86 4753 aa8.96□□□□□ -0.97
LIG1-202ENST00000427526 PRKDCP78527 4128 aaKnown RBP8.96□□□□□ -0.98
LIG1-202ENST00000427526 PRLHP81277 87 aa8.96□□□□□ -0.98
LIG1-202ENST00000427526 NUPR2A6NF83 97 aa8.95□□□□□ -0.98
LIG1-202ENST00000427526 DYNC2H1Q8NCM8 4307 aaKnown RBP8.95□□□□□ -0.98
LIG1-202ENST00000427526 IGLV8-61A0A075B6I0 122 aa8.95□□□□□ -0.98
LIG1-202ENST00000427526 RBM12B-AS1Q9P1G2 102 aa8.94□□□□□ -0.98
LIG1-202ENST00000427526 PLECQ15149 4684 aaKnown RBP8.93□□□□□ -0.98
LIG1-202ENST00000427526 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.92□□□□□ -0.98
LIG1-202ENST00000427526 KRTAP11-1Q8IUC1 163 aa8.91□□□□□ -0.98
LIG1-202ENST00000427526 NBDYA0A0U1RRE5 68 aa8.91□□□□□ -0.98
LIG1-202ENST00000427526 Q1T7F1 81 aa8.91□□□□□ -0.98
LIG1-202ENST00000427526 LRCOL1A6NCL2 159 aa8.88□□□□□ -0.99
LIG1-202ENST00000427526 HCG22E2RYF7 251 aa8.88□□□□□ -0.99
LIG1-202ENST00000427526 ZCCHC13Q8WW36 166 aaKnown RBP8.88□□□□□ -0.99
LIG1-202ENST00000427526 PHF5AQ7RTV0 110 aaKnown RBP8.88□□□□□ -0.99
LIG1-202ENST00000427526 H0Y9J4 135 aa8.88□□□□□ -0.99
LIG1-202ENST00000427526 CHTF8P0CG12 524 aa8.88□□□□□ -0.99
LIG1-202ENST00000427526 STARD9Q9P2P6 4700 aa8.87□□□□□ -0.99
LIG1-202ENST00000427526 A0A087WSZ3 146 aa8.87□□□□□ -0.99
LIG1-202ENST00000427526 hDV103S1A0JD37 113 aa8.87□□□□□ -0.99
LIG1-202ENST00000427526 PSPHP1O15172 72 aa8.87□□□□□ -0.99
LIG1-202ENST00000427526 DEFB116Q30KQ4 102 aa8.87□□□□□ -0.99
LIG1-202ENST00000427526 C14orf177Q52M58 125 aa8.87□□□□□ -0.99
LIG1-202ENST00000427526 SPRR1BP22528 89 aa8.86□□□□□ -0.99
LIG1-202ENST00000427526 UBE2AP49459 152 aa8.86□□□□□ -0.99
LIG1-202ENST00000427526 A8MU10 97 aa8.85□□□□□ -0.99
LIG1-202ENST00000427526 KTN1-AS1Q86SY8 53 aa8.85□□□□□ -0.99
LIG1-202ENST00000427526 Q6ZRN7 208 aaPredicted RBP8.84□□□□□ -0.99
LIG1-202ENST00000427526 SRRM2Q9UQ35 2752 aaKnown RBP8.84□□□□□ -0.99
LIG1-202ENST00000427526 C9orf163Q8N9P6 203 aa8.84□□□□□ -0.99
LIG1-202ENST00000427526 TRAV22A0A0B4J277 110 aa8.82□□□□□ -1
LIG1-202ENST00000427526 RPL37AP61513 92 aaKnown RBP8.8□□□□□ -1
LIG1-202ENST00000427526 KRTAP29-1A8MX34 341 aaPredicted RBP8.8□□□□□ -1
LIG1-202ENST00000427526 FBN3Q75N90 2809 aa8.79□□□□□ -1
LIG1-202ENST00000427526 WFDC13Q8IUB5 93 aa8.79□□□□□ -1
LIG1-202ENST00000427526 C1orf64Q8NEQ6 169 aa8.78□□□□□ -1
LIG1-202ENST00000427526 VPS13DQ5THJ4 4388 aa8.78□□□□□ -1
LIG1-202ENST00000427526 PANO1I0J062 215 aa8.78□□□□□ -1
LIG1-202ENST00000427526 LINC00472Q9H8W2 130 aa8.78□□□□□ -1
LIG1-202ENST00000427526 KRTAP13-1Q8IUC0 172 aa8.77□□□□□ -1.01
LIG1-202ENST00000427526 A8MUN3 132 aa8.75□□□□□ -1.01
LIG1-202ENST00000427526 A8MWP4 228 aa8.74□□□□□ -1.01
LIG1-202ENST00000427526 TGP01266 2768 aa8.73□□□□□ -1.01
LIG1-202ENST00000427526 KMT2AQ03164 3969 aa8.73□□□□□ -1.01
LIG1-202ENST00000427526 A0A087WTM6 91 aa8.72□□□□□ -1.01
LIG1-202ENST00000427526 Q6ZR54 194 aa8.72□□□□□ -1.01
LIG1-202ENST00000427526 CASC2Q6XLA1 102 aa8.72□□□□□ -1.01
LIG1-202ENST00000427526 CYP4F30PQ9H0H9 118 aa8.72□□□□□ -1.01
LIG1-202ENST00000427526 MP68P56378 58 aa8.71□□□□□ -1.02
LIG1-202ENST00000427526 NDUFB1O75438 58 aa8.7□□□□□ -1.02
LIG1-202ENST00000427526 Q5VV11 94 aa8.7□□□□□ -1.02
LIG1-202ENST00000427526 SPACA4Q8TDM5 124 aa8.69□□□□□ -1.02
LIG1-202ENST00000427526 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.69□□□□□ -1.02
LIG1-202ENST00000427526 NDUFS5O43920 106 aa8.69□□□□□ -1.02
LIG1-202ENST00000427526 LY6G6CO95867 125 aa8.69□□□□□ -1.02
LIG1-202ENST00000427526 LINC00208Q96KT6 92 aa8.68□□□□□ -1.02
LIG1-202ENST00000427526 C8orf87E5RJ46 101 aa8.67□□□□□ -1.02
LIG1-202ENST00000427526 H3BS24 57 aa8.67□□□□□ -1.02
LIG1-202ENST00000427526 SPTSSBQ8NFR3 76 aa8.67□□□□□ -1.02
LIG1-202ENST00000427526 KRTAP21-3Q3LHN1 58 aa8.67□□□□□ -1.02
LIG1-202ENST00000427526 H3BPC8 53 aa8.66□□□□□ -1.02
LIG1-202ENST00000427526 H0Y9P7 68 aa8.65□□□□□ -1.02
LIG1-202ENST00000427526 PRR4Q16378 134 aa8.65□□□□□ -1.02
LIG1-202ENST00000427526 MMP24-AS1A0A0U1RRL7 71 aa8.64□□□□□ -1.03
LIG1-202ENST00000427526 A6NN06 94 aa8.64□□□□□ -1.03
LIG1-202ENST00000427526 Q96NJ1 140 aa8.64□□□□□ -1.03
LIG1-202ENST00000427526 DNAH2Q9P225 4427 aa8.64□□□□□ -1.03
LIG1-202ENST00000427526 RTL8CO15255 209 aa8.64□□□□□ -1.03
LIG1-202ENST00000427526 LINC00483Q53H64 154 aa8.64□□□□□ -1.03
LIG1-202ENST00000427526 C1orf134Q5TEV5 83 aa8.64□□□□□ -1.03
LIG1-202ENST00000427526 HECTD4Q9Y4D8 3996 aa8.63□□□□□ -1.03
LIG1-202ENST00000427526 CHKB-CPT1BH3BT56 60 aa8.63□□□□□ -1.03
LIG1-202ENST00000427526 IGLV9-49A0A0B4J1Y8 123 aa8.62□□□□□ -1.03
LIG1-202ENST00000427526 ATP11AUNQ6ZP68 121 aa8.62□□□□□ -1.03
LIG1-202ENST00000427526 SPANXA2-OT1Q8N9U9 137 aa8.61□□□□□ -1.03
LIG1-202ENST00000427526 ASB16-AS1Q495Z4 193 aa8.61□□□□□ -1.03
LIG1-202ENST00000427526 WWC2-AS2Q96NR7 200 aa8.6□□□□□ -1.03
LIG1-202ENST00000427526 LCA10Q71F78 164 aa8.59□□□□□ -1.03
LIG1-202ENST00000427526 MOBPQ13875 183 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms