RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 LINC00336Q6ZUF6 198 aa5.88□□□□□ -1.47
HMGB4-201ENST00000425537 ST20-AS1Q8NBB2 130 aa5.88□□□□□ -1.47
HMGB4-201ENST00000425537 KRTAP4-6Q9BYQ5 205 aa5.88□□□□□ -1.47
HMGB4-201ENST00000425537 C1orf137Q5JT78 98 aa5.87□□□□□ -1.47
HMGB4-201ENST00000425537 IGLV8-61A0A075B6I0 122 aa5.85□□□□□ -1.47
HMGB4-201ENST00000425537 KRTAP13-1Q8IUC0 172 aa5.85□□□□□ -1.47
HMGB4-201ENST00000425537 DNAH10Q8IVF4 4471 aa5.85□□□□□ -1.47
HMGB4-201ENST00000425537 KRTAP11-1Q8IUC1 163 aa5.84□□□□□ -1.47
HMGB4-201ENST00000425537 Q8NBF4 154 aa5.84□□□□□ -1.47
HMGB4-201ENST00000425537 PSORS1C2Q9UIG4 136 aa5.84□□□□□ -1.47
HMGB4-201ENST00000425537 FRAS1Q86XX4 4008 aa5.84□□□□□ -1.47
HMGB4-201ENST00000425537 A0A1B0GVY2 172 aa5.83□□□□□ -1.48
HMGB4-201ENST00000425537 CXCL6P80162 114 aa5.83□□□□□ -1.48
HMGB4-201ENST00000425537 NREPQ16612 68 aa5.83□□□□□ -1.48
HMGB4-201ENST00000425537 Q6ZVQ6 151 aa5.83□□□□□ -1.48
HMGB4-201ENST00000425537 SMIM29Q86T20 159 aa5.83□□□□□ -1.48
HMGB4-201ENST00000425537 DNAH2Q9P225 4427 aa5.82□□□□□ -1.48
HMGB4-201ENST00000425537 ZNF861PO60384 105 aa5.82□□□□□ -1.48
HMGB4-201ENST00000425537 KRTAP10-2P60368 255 aa5.82□□□□□ -1.48
HMGB4-201ENST00000425537 RPL37AP61513 92 aaKnown RBP5.82□□□□□ -1.48
HMGB4-201ENST00000425537 HAMPP81172 84 aa5.82□□□□□ -1.48
HMGB4-201ENST00000425537 C3orf22Q8N5N4 141 aa5.82□□□□□ -1.48
HMGB4-201ENST00000425537 IGKV3D-7A0A0C4DH55 119 aa5.81□□□□□ -1.48
HMGB4-201ENST00000425537 Q6ZSA8 131 aa5.81□□□□□ -1.48
HMGB4-201ENST00000425537 SPRR4Q96PI1 79 aa5.81□□□□□ -1.48
HMGB4-201ENST00000425537 CRYGAP11844 174 aa5.8□□□□□ -1.48
HMGB4-201ENST00000425537 ANAPC13Q9BS18 74 aa5.8□□□□□ -1.48
HMGB4-201ENST00000425537 DNAH17Q9UFH2 4485 aa5.8□□□□□ -1.48
HMGB4-201ENST00000425537 IGLV7-43P04211 117 aa5.79□□□□□ -1.48
HMGB4-201ENST00000425537 HIST1H4AP62805 103 aaKnown RBP5.79□□□□□ -1.48
HMGB4-201ENST00000425537 LINC00483Q53H64 154 aa5.79□□□□□ -1.48
HMGB4-201ENST00000425537 CIRBP-AS1Q8TBR5 109 aa5.79□□□□□ -1.48
HMGB4-201ENST00000425537 FAM236AA0A1B0GUQ0 79 aa5.78□□□□□ -1.48
HMGB4-201ENST00000425537 FAM236BA0A1B0GV22 79 aa5.78□□□□□ -1.48
HMGB4-201ENST00000425537 A0A1W2PNM2 257 aa5.78□□□□□ -1.48
HMGB4-201ENST00000425537 IGFL1Q6UW32 110 aa5.78□□□□□ -1.48
HMGB4-201ENST00000425537 ATOX1O00244 68 aa5.77□□□□□ -1.49
HMGB4-201ENST00000425537 BPY2O14599 106 aa5.77□□□□□ -1.49
HMGB4-201ENST00000425537 KRTAP10-1P60331 282 aa5.77□□□□□ -1.49
HMGB4-201ENST00000425537 SCXQ7RTU7 201 aa5.77□□□□□ -1.49
HMGB4-201ENST00000425537 FAT2Q9NYQ8 4349 aa5.77□□□□□ -1.49
HMGB4-201ENST00000425537 EPPK1P58107 5090 aaKnown RBP5.76□□□□□ -1.49
HMGB4-201ENST00000425537 C9orf153Q5TBE3 101 aa5.75□□□□□ -1.49
HMGB4-201ENST00000425537 FAM30AQ9NZY2 134 aa5.75□□□□□ -1.49
HMGB4-201ENST00000425537 SMIM20Q8N5G0 67 aa5.74□□□□□ -1.49
HMGB4-201ENST00000425537 PKD1P98161 4303 aa5.74□□□□□ -1.49
HMGB4-201ENST00000425537 SS18L2Q9UHA2 77 aa5.73□□□□□ -1.49
HMGB4-201ENST00000425537 HECTD4Q9Y4D8 3996 aa5.73□□□□□ -1.49
HMGB4-201ENST00000425537 DNAH11Q96DT5 4516 aa5.73□□□□□ -1.49
HMGB4-201ENST00000425537 IGLV9-49A0A0B4J1Y8 123 aa5.72□□□□□ -1.49
HMGB4-201ENST00000425537 A0A087WSZ3 146 aa5.71□□□□□ -1.5
HMGB4-201ENST00000425537 A0A087WVE0 104 aa5.7□□□□□ -1.5
HMGB4-201ENST00000425537 J3KT08 172 aa5.7□□□□□ -1.5
HMGB4-201ENST00000425537 FAM229BQ4G0N7 80 aa5.7□□□□□ -1.5
HMGB4-201ENST00000425537 SSBP3-AS1Q7Z2R9 100 aa5.7□□□□□ -1.5
HMGB4-201ENST00000425537 MOBPQ13875 183 aa5.69□□□□□ -1.5
HMGB4-201ENST00000425537 CD164Q04900 197 aa5.68□□□□□ -1.5
HMGB4-201ENST00000425537 UQCRQO14949 82 aa5.67□□□□□ -1.5
HMGB4-201ENST00000425537 IGKV4-1P06312 121 aa5.67□□□□□ -1.5
HMGB4-201ENST00000425537 SERP2Q8N6R1 65 aa5.67□□□□□ -1.5
HMGB4-201ENST00000425537 KRTAP17-1Q9BYP8 105 aa5.67□□□□□ -1.5
HMGB4-201ENST00000425537 COX7CP15954 63 aa5.66□□□□□ -1.5
HMGB4-201ENST00000425537 BIRC6Q9NR09 4857 aa5.66□□□□□ -1.5
HMGB4-201ENST00000425537 DYNC1H1Q14204 4646 aaKnown RBP5.65□□□□□ -1.5
HMGB4-201ENST00000425537 PKHD1P08F94 4074 aa5.65□□□□□ -1.5
HMGB4-201ENST00000425537 A0A0G2JQZ4 141 aa5.65□□□□□ -1.5
HMGB4-201ENST00000425537 NDUFB1O75438 58 aa5.65□□□□□ -1.5
HMGB4-201ENST00000425537 SPINK6Q6UWN8 80 aa5.65□□□□□ -1.5
HMGB4-201ENST00000425537 TRAV7A0A075B6U4 112 aa5.64□□□□□ -1.51
HMGB4-201ENST00000425537 SMR3BP02814 79 aaPredicted RBP5.64□□□□□ -1.51
HMGB4-201ENST00000425537 DNAH5Q8TE73 4624 aa5.64□□□□□ -1.51
HMGB4-201ENST00000425537 DSCR10P59022 87 aa5.63□□□□□ -1.51
HMGB4-201ENST00000425537 XP32Q5T750 250 aa5.63□□□□□ -1.51
HMGB4-201ENST00000425537 LINC00472Q9H8W2 130 aa5.63□□□□□ -1.51
HMGB4-201ENST00000425537 A8MWP4 228 aa5.62□□□□□ -1.51
HMGB4-201ENST00000425537 CDK2AP2O75956 126 aa5.62□□□□□ -1.51
HMGB4-201ENST00000425537 Q8N9L7 120 aa5.62□□□□□ -1.51
HMGB4-201ENST00000425537 ANAPC11Q9NYG5 84 aa5.62□□□□□ -1.51
HMGB4-201ENST00000425537 HCG22E2RYF7 251 aa5.6□□□□□ -1.51
HMGB4-201ENST00000425537 K7EQZ3 153 aa5.6□□□□□ -1.51
HMGB4-201ENST00000425537 HRCT1Q6UXD1 115 aa5.6□□□□□ -1.51
HMGB4-201ENST00000425537 KRTAP4-5Q9BYR2 181 aa5.6□□□□□ -1.51
HMGB4-201ENST00000425537 LRP1BQ9NZR2 4599 aa5.6□□□□□ -1.51
HMGB4-201ENST00000425537 CCDC179H3BU77 68 aa5.59□□□□□ -1.51
HMGB4-201ENST00000425537 PLA2G1BP04054 148 aaKnown RBP5.59□□□□□ -1.51
HMGB4-201ENST00000425537 ASB16-AS1Q495Z4 193 aa5.59□□□□□ -1.51
HMGB4-201ENST00000425537 PRR15Q8IV56 129 aa5.59□□□□□ -1.51
HMGB4-201ENST00000425537 LIMD2Q9BT23 127 aa5.59□□□□□ -1.51
HMGB4-201ENST00000425537 DEFB116Q30KQ4 102 aa5.58□□□□□ -1.52
HMGB4-201ENST00000425537 SRRM2Q9UQ35 2752 aaKnown RBP5.57□□□□□ -1.52
HMGB4-201ENST00000425537 Q5XG85 94 aa5.57□□□□□ -1.52
HMGB4-201ENST00000425537 KIAA1109Q2LD37 5005 aa5.57□□□□□ -1.52
HMGB4-201ENST00000425537 APOBP04114 4563 aaKnown RBP5.56□□□□□ -1.52
HMGB4-201ENST00000425537 FAM229AH3BQW9 127 aa5.56□□□□□ -1.52
HMGB4-201ENST00000425537 TYMSOSQ8TAI1 123 aa5.56□□□□□ -1.52
HMGB4-201ENST00000425537 KRTAP1-4P0C5Y4 121 aa5.55□□□□□ -1.52
HMGB4-201ENST00000425537 SPAG11AQ6PDA7 123 aa5.55□□□□□ -1.52
HMGB4-201ENST00000425537 CASC2Q6XLA1 102 aa5.55□□□□□ -1.52
HMGB4-201ENST00000425537 A0A087X002 238 aa5.54□□□□□ -1.52
HMGB4-201ENST00000425537 A0A1B0GVX0 72 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms