RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 IGKV3D-7A0A0C4DH55 119 aa16.25■□□□□ 0.19
LDB1-202ENST00000425280 SPRR1BP22528 89 aa16.25■□□□□ 0.19
LDB1-202ENST00000425280 KRTAP10-1P60331 282 aa16.24■□□□□ 0.19
LDB1-202ENST00000425280 F8WEM9 126 aa16.23■□□□□ 0.19
LDB1-202ENST00000425280 CIRBP-AS1Q8TBR5 109 aa16.22■□□□□ 0.19
LDB1-202ENST00000425280 Q6ZSA8 131 aa16.21■□□□□ 0.19
LDB1-202ENST00000425280 Q6ZVQ6 151 aa16.21■□□□□ 0.19
LDB1-202ENST00000425280 SRRM2Q9UQ35 2752 aaKnown RBP16.21■□□□□ 0.18
LDB1-202ENST00000425280 A0A1W2PNM2 257 aa16.2■□□□□ 0.18
LDB1-202ENST00000425280 IGLV8-61A0A075B6I0 122 aa16.17■□□□□ 0.18
LDB1-202ENST00000425280 ATP5EP2Q5VTU8 51 aa16.17■□□□□ 0.18
LDB1-202ENST00000425280 SCXQ7RTU7 201 aa16.16■□□□□ 0.18
LDB1-202ENST00000425280 Q8NBF4 154 aa16.16■□□□□ 0.18
LDB1-202ENST00000425280 ZNF861PO60384 105 aa16.14■□□□□ 0.17
LDB1-202ENST00000425280 IGFL1Q6UW32 110 aa16.14■□□□□ 0.17
LDB1-202ENST00000425280 A0A0G2JQZ4 141 aa16.12■□□□□ 0.17
LDB1-202ENST00000425280 SPRR4Q96PI1 79 aa16.12■□□□□ 0.17
LDB1-202ENST00000425280 A0A1B0GW54 56 aa16.1■□□□□ 0.17
LDB1-202ENST00000425280 HAMPP81172 84 aa16.1■□□□□ 0.17
LDB1-202ENST00000425280 LINC00336Q6ZUF6 198 aa16.09■□□□□ 0.17
LDB1-202ENST00000425280 IGLV7-43P04211 117 aa16.08■□□□□ 0.16
LDB1-202ENST00000425280 LINC00483Q53H64 154 aa16.06■□□□□ 0.16
LDB1-202ENST00000425280 FAM236AA0A1B0GUQ0 79 aa16.06■□□□□ 0.16
LDB1-202ENST00000425280 FAM236BA0A1B0GV22 79 aa16.06■□□□□ 0.16
LDB1-202ENST00000425280 ZNF706Q9Y5V0 76 aaPredicted RBP16.06■□□□□ 0.16
LDB1-202ENST00000425280 NREPQ16612 68 aa16.05■□□□□ 0.16
LDB1-202ENST00000425280 CRYGAP11844 174 aa16.04■□□□□ 0.16
LDB1-202ENST00000425280 A0A087WVE0 104 aa16.03■□□□□ 0.16
LDB1-202ENST00000425280 HIST1H4AP62805 103 aaKnown RBP16.03■□□□□ 0.16
LDB1-202ENST00000425280 CXCL6P80162 114 aa16.03■□□□□ 0.16
LDB1-202ENST00000425280 ANAPC13Q9BS18 74 aa15.99■□□□□ 0.15
LDB1-202ENST00000425280 RYR2Q92736 4967 aa15.96■□□□□ 0.15
LDB1-202ENST00000425280 IGLV9-49A0A0B4J1Y8 123 aa15.95■□□□□ 0.14
LDB1-202ENST00000425280 A0A1B0GVY2 172 aa15.95■□□□□ 0.14
LDB1-202ENST00000425280 ANAPC11Q9NYG5 84 aa15.94■□□□□ 0.14
LDB1-202ENST00000425280 C9orf153Q5TBE3 101 aa15.91■□□□□ 0.14
LDB1-202ENST00000425280 LRP1BQ9NZR2 4599 aa15.91■□□□□ 0.14
LDB1-202ENST00000425280 PKHD1P08F94 4074 aa15.91■□□□□ 0.14
LDB1-202ENST00000425280 BPY2O14599 106 aa15.9■□□□□ 0.14
LDB1-202ENST00000425280 A0A087WSZ3 146 aa15.9■□□□□ 0.14
LDB1-202ENST00000425280 KMT2CQ8NEZ4 4911 aaKnown RBP15.86■□□□□ 0.13
LDB1-202ENST00000425280 RPL37AP61513 92 aaKnown RBP15.85■□□□□ 0.13
LDB1-202ENST00000425280 MOBPQ13875 183 aa15.83■□□□□ 0.13
LDB1-202ENST00000425280 Q8N9L7 120 aa15.83■□□□□ 0.13
LDB1-202ENST00000425280 ATOX1O00244 68 aa15.8■□□□□ 0.12
LDB1-202ENST00000425280 IGKV4-1P06312 121 aa15.8■□□□□ 0.12
LDB1-202ENST00000425280 DYNC1H1Q14204 4646 aaKnown RBP15.78■□□□□ 0.12
LDB1-202ENST00000425280 DSCR10P59022 87 aa15.75■□□□□ 0.11
LDB1-202ENST00000425280 VPS13BQ7Z7G8 4022 aa15.74■□□□□ 0.11
LDB1-202ENST00000425280 DEFB116Q30KQ4 102 aa15.72■□□□□ 0.11
LDB1-202ENST00000425280 HRCT1Q6UXD1 115 aa15.72■□□□□ 0.11
LDB1-202ENST00000425280 CCDC179H3BU77 68 aa15.69■□□□□ 0.1
LDB1-202ENST00000425280 LINC00472Q9H8W2 130 aa15.67■□□□□ 0.1
LDB1-202ENST00000425280 K7EQZ3 153 aa15.66■□□□□ 0.1
LDB1-202ENST00000425280 A0A087X002 238 aa15.63■□□□□ 0.09
LDB1-202ENST00000425280 SMR3BP02814 79 aaPredicted RBP15.63■□□□□ 0.09
LDB1-202ENST00000425280 SSBP3-AS1Q7Z2R9 100 aa15.63■□□□□ 0.09
LDB1-202ENST00000425280 KRTAP1-4P0C5Y4 121 aa15.62■□□□□ 0.09
LDB1-202ENST00000425280 FAM229BQ4G0N7 80 aa15.62■□□□□ 0.09
LDB1-202ENST00000425280 SERP2Q8N6R1 65 aa15.62■□□□□ 0.09
LDB1-202ENST00000425280 COX7CP15954 63 aa15.61■□□□□ 0.09
LDB1-202ENST00000425280 KRTAP13-2Q52LG2 175 aa15.6■□□□□ 0.09
LDB1-202ENST00000425280 APOBP04114 4563 aaKnown RBP15.59■□□□□ 0.09
LDB1-202ENST00000425280 SS18L2Q9UHA2 77 aa15.58■□□□□ 0.09
LDB1-202ENST00000425280 UQCRQO14949 82 aa15.58■□□□□ 0.08
LDB1-202ENST00000425280 Q96NJ1 140 aa15.58■□□□□ 0.08
LDB1-202ENST00000425280 CD164Q04900 197 aa15.54■□□□□ 0.08
LDB1-202ENST00000425280 SPINK6Q6UWN8 80 aa15.54■□□□□ 0.08
LDB1-202ENST00000425280 J3KT08 172 aa15.52■□□□□ 0.08
LDB1-202ENST00000425280 A8MWP4 228 aa15.52■□□□□ 0.07
LDB1-202ENST00000425280 SMIM20Q8N5G0 67 aa15.52■□□□□ 0.07
LDB1-202ENST00000425280 TRAV7A0A075B6U4 112 aa15.5■□□□□ 0.07
LDB1-202ENST00000425280 RYR3Q15413 4870 aa15.49■□□□□ 0.07
LDB1-202ENST00000425280 PRR15Q8IV56 129 aa15.49■□□□□ 0.07
LDB1-202ENST00000425280 PLA2G1BP04054 148 aaKnown RBP15.48■□□□□ 0.07
LDB1-202ENST00000425280 HCG22E2RYF7 251 aa15.47■□□□□ 0.07
LDB1-202ENST00000425280 KRTAP10-4P60372 401 aaPredicted RBP15.47■□□□□ 0.07
LDB1-202ENST00000425280 OCR1Q9BZK8 76 aa15.42■□□□□ 0.06
LDB1-202ENST00000425280 NDUFB1O75438 58 aa15.39■□□□□ 0.05
LDB1-202ENST00000425280 WFDC13Q8IUB5 93 aa15.39■□□□□ 0.05
LDB1-202ENST00000425280 FAT1Q14517 4588 aa15.38■□□□□ 0.05
LDB1-202ENST00000425280 TYMSOSQ8TAI1 123 aa15.36■□□□□ 0.05
LDB1-202ENST00000425280 KRTAP29-1A8MX34 341 aaPredicted RBP15.36■□□□□ 0.05
LDB1-202ENST00000425280 ASB16-AS1Q495Z4 193 aa15.35■□□□□ 0.05
LDB1-202ENST00000425280 CASC2Q6XLA1 102 aa15.32■□□□□ 0.04
LDB1-202ENST00000425280 CYSTM1Q9H1C7 97 aa15.32■□□□□ 0.04
LDB1-202ENST00000425280 MMP24-AS1A0A0U1RRL7 71 aa15.31■□□□□ 0.04
LDB1-202ENST00000425280 C20orf197Q8N268 126 aa15.31■□□□□ 0.04
LDB1-202ENST00000425280 PRR26Q8N8Z3 221 aa15.31■□□□□ 0.04
LDB1-202ENST00000425280 Q5XG85 94 aa15.31■□□□□ 0.04
LDB1-202ENST00000425280 CDK2AP2O75956 126 aa15.3■□□□□ 0.04
LDB1-202ENST00000425280 A0A1B0GVX0 72 aa15.29■□□□□ 0.04
LDB1-202ENST00000425280 IGHV6-1A0A0B4J1U7 121 aa15.26■□□□□ 0.03
LDB1-202ENST00000425280 C8orf17Q9NRJ1 99 aa15.24■□□□□ 0.03
LDB1-202ENST00000425280 C4orf48Q5BLP8 95 aa15.24■□□□□ 0.03
LDB1-202ENST00000425280 LIMD2Q9BT23 127 aa15.22■□□□□ 0.03
LDB1-202ENST00000425280 hDV103S1A0JD37 113 aa15.21■□□□□ 0.03
LDB1-202ENST00000425280 FAM229AH3BQW9 127 aa15.21■□□□□ 0.03
LDB1-202ENST00000425280 C1orf195Q5TG92 126 aa15.21■□□□□ 0.03
LDB1-202ENST00000425280 SPINK1P00995 79 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms