RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 LCE6AA0A183 80 aa6.37□□□□□ -1.39
USP54-205ENST00000424265 KCNQ1DNQ9H478 68 aa6.37□□□□□ -1.39
USP54-205ENST00000424265 FBN2P35556 2912 aa6.36□□□□□ -1.39
USP54-205ENST00000424265 STAB1Q9NY15 2570 aa6.36□□□□□ -1.39
USP54-205ENST00000424265 MGAM2Q2M2H8 2515 aa6.36□□□□□ -1.39
USP54-205ENST00000424265 MAP1AP78559 2803 aaPredicted RBP6.36□□□□□ -1.39
USP54-205ENST00000424265 XAGE1AQ9HD64 81 aa6.35□□□□□ -1.39
USP54-205ENST00000424265 CELSR2Q9HCU4 2923 aa6.34□□□□□ -1.39
USP54-205ENST00000424265 IGLV6-57P01721 117 aa6.34□□□□□ -1.39
USP54-205ENST00000424265 DHRS4-AS1Q9P1J3 65 aa6.34□□□□□ -1.39
USP54-205ENST00000424265 WDFY3Q8IZQ1 3526 aa6.33□□□□□ -1.4
USP54-205ENST00000424265 A0A1B0GU69 56 aa6.32□□□□□ -1.4
USP54-205ENST00000424265 CFAP47Q6ZTR5 3102 aa6.32□□□□□ -1.4
USP54-205ENST00000424265 CASC10Q5T4H9 136 aa6.31□□□□□ -1.4
USP54-205ENST00000424265 REG3GQ6UW15 175 aa6.3□□□□□ -1.4
USP54-205ENST00000424265 Q8NBF4 154 aa6.3□□□□□ -1.4
USP54-205ENST00000424265 C6orf48Q9UBA6 75 aa6.3□□□□□ -1.4
USP54-205ENST00000424265 ZFHX4Q86UP3 3567 aa6.29□□□□□ -1.4
USP54-205ENST00000424265 ZANQ9Y493 2812 aa6.29□□□□□ -1.4
USP54-205ENST00000424265 IGLV7-46A0A075B6I9 117 aa6.28□□□□□ -1.4
USP54-205ENST00000424265 MIR22HGQ0VDD5 57 aa6.28□□□□□ -1.4
USP54-205ENST00000424265 RTL8CO15255 209 aa6.28□□□□□ -1.4
USP54-205ENST00000424265 TACC2O95359 2948 aa6.28□□□□□ -1.4
USP54-205ENST00000424265 TLX1NBP0CAT3 122 aa6.27□□□□□ -1.41
USP54-205ENST00000424265 LAMA5O15230 3695 aa6.27□□□□□ -1.41
USP54-205ENST00000424265 CNBPP62633 177 aaKnown RBP6.26□□□□□ -1.41
USP54-205ENST00000424265 DSCR10P59022 87 aa6.26□□□□□ -1.41
USP54-205ENST00000424265 A0A087WTM6 91 aa6.26□□□□□ -1.41
USP54-205ENST00000424265 CDK2AP2O75956 126 aa6.26□□□□□ -1.41
USP54-205ENST00000424265 C15orf56Q8N910 161 aa6.26□□□□□ -1.41
USP54-205ENST00000424265 DCHS2Q6V1P9 2916 aa6.25□□□□□ -1.41
USP54-205ENST00000424265 BSNQ9UPA5 3926 aa6.25□□□□□ -1.41
USP54-205ENST00000424265 CRYBG3Q68DQ2 2970 aa6.25□□□□□ -1.41
USP54-205ENST00000424265 A0A1W2PNM2 257 aa6.24□□□□□ -1.41
USP54-205ENST00000424265 UQCR11O14957 56 aa6.24□□□□□ -1.41
USP54-205ENST00000424265 PLA2G2DQ9UNK4 145 aa6.23□□□□□ -1.41
USP54-205ENST00000424265 C9orf163Q8N9P6 203 aa6.23□□□□□ -1.41
USP54-205ENST00000424265 A0A087X002 238 aa6.23□□□□□ -1.41
USP54-205ENST00000424265 LINC00528Q8N1L1 170 aa6.21□□□□□ -1.41
USP54-205ENST00000424265 ASPMQ8IZT6 3477 aa6.21□□□□□ -1.42
USP54-205ENST00000424265 OTOGQ6ZRI0 2925 aa6.21□□□□□ -1.42
USP54-205ENST00000424265 A0A087WSZ3 146 aa6.21□□□□□ -1.42
USP54-205ENST00000424265 RPL37AP61513 92 aaKnown RBP6.21□□□□□ -1.42
USP54-205ENST00000424265 RPL37AP8A6NKH3 93 aa6.2□□□□□ -1.42
USP54-205ENST00000424265 RELNP78509 3460 aa6.19□□□□□ -1.42
USP54-205ENST00000424265 ACYP2P14621 99 aa6.19□□□□□ -1.42
USP54-205ENST00000424265 ROMO1P60602 79 aa6.19□□□□□ -1.42
USP54-205ENST00000424265 SPINT4Q6UDR6 99 aa6.19□□□□□ -1.42
USP54-205ENST00000424265 Q6ZR54 194 aa6.19□□□□□ -1.42
USP54-205ENST00000424265 TP53AIP1Q9HCN2 124 aa6.19□□□□□ -1.42
USP54-205ENST00000424265 NOTCH1P46531 2555 aa6.18□□□□□ -1.42
USP54-205ENST00000424265 IGLV5-48A0A075B6I7 105 aa6.18□□□□□ -1.42
USP54-205ENST00000424265 Q8N377 158 aa6.17□□□□□ -1.42
USP54-205ENST00000424265 Q8NDZ9 215 aa6.17□□□□□ -1.42
USP54-205ENST00000424265 ZFHX3Q15911 3703 aa6.16□□□□□ -1.42
USP54-205ENST00000424265 KRTAP16-1A8MUX0 517 aa6.16□□□□□ -1.42
USP54-205ENST00000424265 A8MWP4 228 aa6.16□□□□□ -1.42
USP54-205ENST00000424265 A0A096LNI7 61 aa6.15□□□□□ -1.42
USP54-205ENST00000424265 HRES1P13985 223 aa6.15□□□□□ -1.42
USP54-205ENST00000424265 IGLV5-37A0A075B6J1 123 aa6.15□□□□□ -1.43
USP54-205ENST00000424265 IGLV1-50A0A075B6I6 118 aa6.14□□□□□ -1.43
USP54-205ENST00000424265 FAM229AH3BQW9 127 aa6.14□□□□□ -1.43
USP54-205ENST00000424265 K7ERS5 55 aa6.14□□□□□ -1.43
USP54-205ENST00000424265 MXRA5Q9NR99 2828 aa6.14□□□□□ -1.43
USP54-205ENST00000424265 NIPBLQ6KC79 2804 aaeCLIP6.13□□□□□ -1.43
USP54-205ENST00000424265 SPRR4Q96PI1 79 aa6.12□□□□□ -1.43
USP54-205ENST00000424265 KRTAP26-1Q6PEX3 210 aa6.11□□□□□ -1.43
USP54-205ENST00000424265 Q6ZRX8 168 aa6.11□□□□□ -1.43
USP54-205ENST00000424265 PLAC8Q9NZF1 115 aa6.11□□□□□ -1.43
USP54-205ENST00000424265 SPATA8Q6RVD6 105 aa6.1□□□□□ -1.43
USP54-205ENST00000424265 ANK3Q12955 4377 aaKnown RBP6.09□□□□□ -1.43
USP54-205ENST00000424265 TNP2Q05952 138 aa6.09□□□□□ -1.43
USP54-205ENST00000424265 CHTF8P0CG12 524 aa6.08□□□□□ -1.44
USP54-205ENST00000424265 KRTAP25-1Q3LHN0 102 aa6.07□□□□□ -1.44
USP54-205ENST00000424265 KRTAP1-5Q9BYS1 174 aa6.07□□□□□ -1.44
USP54-205ENST00000424265 IGLV8-61A0A075B6I0 122 aa6.07□□□□□ -1.44
USP54-205ENST00000424265 SSBP3-AS1Q7Z2R9 100 aa6.07□□□□□ -1.44
USP54-205ENST00000424265 SMG1Q96Q15 3661 aaKnown RBP6.07□□□□□ -1.44
USP54-205ENST00000424265 PRLHP81277 87 aa6.06□□□□□ -1.44
USP54-205ENST00000424265 NF1P21359 2839 aa6.04□□□□□ -1.44
USP54-205ENST00000424265 IGFL1Q6UW32 110 aa6.04□□□□□ -1.44
USP54-205ENST00000424265 SPACA4Q8TDM5 124 aa6.04□□□□□ -1.44
USP54-205ENST00000424265 FAM168BA1KXE4 195 aa6.03□□□□□ -1.44
USP54-205ENST00000424265 ZNF861PO60384 105 aa6.02□□□□□ -1.44
USP54-205ENST00000424265 IGLV9-49A0A0B4J1Y8 123 aa6.02□□□□□ -1.45
USP54-205ENST00000424265 KRTAP29-1A8MX34 341 aaPredicted RBP6.02□□□□□ -1.45
USP54-205ENST00000424265 A0A0G2JQZ4 141 aa6.01□□□□□ -1.45
USP54-205ENST00000424265 A0A1W2PNN7 141 aa6.01□□□□□ -1.45
USP54-205ENST00000424265 Q6ZRN7 208 aaPredicted RBP6□□□□□ -1.45
USP54-205ENST00000424265 SPENQ96T58 3664 aaKnown RBP6□□□□□ -1.45
USP54-205ENST00000424265 DMAC1Q96GE9 116 aa6□□□□□ -1.45
USP54-205ENST00000424265 LUZP6Q538Z0 58 aa5.99□□□□□ -1.45
USP54-205ENST00000424265 IGLV7-43P04211 117 aa5.99□□□□□ -1.45
USP54-205ENST00000424265 NBPF19A0A087WUL8 3843 aa5.97□□□□□ -1.45
USP54-205ENST00000424265 NBEAL2Q6ZNJ1 2754 aa5.97□□□□□ -1.45
USP54-205ENST00000424265 NDUFAF8A1L188 74 aa5.97□□□□□ -1.45
USP54-205ENST00000424265 PSORS1C2Q9UIG4 136 aa5.97□□□□□ -1.45
USP54-205ENST00000424265 CIRBP-AS1Q8TBR5 109 aa5.96□□□□□ -1.46
USP54-205ENST00000424265 NOTCH2NLQ7Z3S9 236 aa5.95□□□□□ -1.46
USP54-205ENST00000424265 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms