RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 A0A1B0GV72 72 aa10.41□□□□□ -0.74
CCDC28B-202ENST00000421922 LINC01547P58512 204 aaPredicted RBP10.41□□□□□ -0.74
CCDC28B-202ENST00000421922 JMJD7-PLA2G4BH0Y9G9 81 aa10.4□□□□□ -0.75
CCDC28B-202ENST00000421922 PLA2G1BP04054 148 aaKnown RBP10.4□□□□□ -0.75
CCDC28B-202ENST00000421922 NDUFV3P56181 108 aaKnown RBP10.4□□□□□ -0.75
CCDC28B-202ENST00000421922 SPRR4Q96PI1 79 aa10.4□□□□□ -0.75
CCDC28B-202ENST00000421922 HSPG2P98160 4391 aa10.39□□□□□ -0.75
CCDC28B-202ENST00000421922 APOBP04114 4563 aaKnown RBP10.37□□□□□ -0.75
CCDC28B-202ENST00000421922 SPRR1BP22528 89 aa10.36□□□□□ -0.75
CCDC28B-202ENST00000421922 RBM3P98179 157 aaKnown RBP10.35□□□□□ -0.75
CCDC28B-202ENST00000421922 C3orf22Q8N5N4 141 aa10.35□□□□□ -0.75
CCDC28B-202ENST00000421922 SPINK6Q6UWN8 80 aa10.34□□□□□ -0.75
CCDC28B-202ENST00000421922 DSCR8Q96T75 97 aa10.33□□□□□ -0.76
CCDC28B-202ENST00000421922 LINC00483Q53H64 154 aa10.33□□□□□ -0.76
CCDC28B-202ENST00000421922 Q5VSD8 79 aa10.32□□□□□ -0.76
CCDC28B-202ENST00000421922 C14orf132Q9NPU4 83 aa10.32□□□□□ -0.76
CCDC28B-202ENST00000421922 J3QR89 54 aa10.3□□□□□ -0.76
CCDC28B-202ENST00000421922 C9orf153Q5TBE3 101 aa10.3□□□□□ -0.76
CCDC28B-202ENST00000421922 SMIM29Q86T20 159 aa10.3□□□□□ -0.76
CCDC28B-202ENST00000421922 OBSCN-AS1Q96MR7 158 aa10.3□□□□□ -0.76
CCDC28B-202ENST00000421922 SRRM2Q9UQ35 2752 aaKnown RBP10.29□□□□□ -0.76
CCDC28B-202ENST00000421922 IGLV9-49A0A0B4J1Y8 123 aa10.29□□□□□ -0.76
CCDC28B-202ENST00000421922 PDE6GP18545 87 aa10.28□□□□□ -0.76
CCDC28B-202ENST00000421922 C21orf62-AS1Q17RA5 79 aa10.26□□□□□ -0.77
CCDC28B-202ENST00000421922 ANAPC11Q9NYG5 84 aa10.26□□□□□ -0.77
CCDC28B-202ENST00000421922 HERC1Q15751 4861 aa10.26□□□□□ -0.77
CCDC28B-202ENST00000421922 KRTAP10-4P60372 401 aaPredicted RBP10.25□□□□□ -0.77
CCDC28B-202ENST00000421922 FAM229BQ4G0N7 80 aa10.25□□□□□ -0.77
CCDC28B-202ENST00000421922 LOC110117498A0A087WWA1 95 aa10.24□□□□□ -0.77
CCDC28B-202ENST00000421922 Q6JHZ5 121 aa10.24□□□□□ -0.77
CCDC28B-202ENST00000421922 VPS25Q9BRG1 176 aa10.24□□□□□ -0.77
CCDC28B-202ENST00000421922 VPS13BQ7Z7G8 4022 aa10.24□□□□□ -0.77
CCDC28B-202ENST00000421922 TRBV7-4A0A0J9YYF1 115 aa10.24□□□□□ -0.77
CCDC28B-202ENST00000421922 K7ERU9 68 aa10.24□□□□□ -0.77
CCDC28B-202ENST00000421922 Q8NBF4 154 aa10.24□□□□□ -0.77
CCDC28B-202ENST00000421922 IGLV8-61A0A075B6I0 122 aa10.23□□□□□ -0.77
CCDC28B-202ENST00000421922 MOBPQ13875 183 aa10.23□□□□□ -0.77
CCDC28B-202ENST00000421922 Q8N1X5 172 aa10.23□□□□□ -0.77
CCDC28B-202ENST00000421922 CRYGAP11844 174 aa10.22□□□□□ -0.77
CCDC28B-202ENST00000421922 CCKP06307 115 aa10.21□□□□□ -0.78
CCDC28B-202ENST00000421922 Q6ZQT0 140 aa10.21□□□□□ -0.78
CCDC28B-202ENST00000421922 IGFL1Q6UW32 110 aa10.19□□□□□ -0.78
CCDC28B-202ENST00000421922 KRTAP1-4P0C5Y4 121 aa10.18□□□□□ -0.78
CCDC28B-202ENST00000421922 FAT1Q14517 4588 aa10.17□□□□□ -0.78
CCDC28B-202ENST00000421922 A0A087X002 238 aa10.16□□□□□ -0.78
CCDC28B-202ENST00000421922 ACYP1P07311 99 aa10.15□□□□□ -0.79
CCDC28B-202ENST00000421922 SSBP3-AS1Q7Z2R9 100 aa10.15□□□□□ -0.79
CCDC28B-202ENST00000421922 FAM240AA0A1B0GVK7 77 aa10.13□□□□□ -0.79
CCDC28B-202ENST00000421922 TYMSOSQ8TAI1 123 aa10.13□□□□□ -0.79
CCDC28B-202ENST00000421922 A0A0G2JQZ4 141 aa10.12□□□□□ -0.79
CCDC28B-202ENST00000421922 A0A1W2PNM2 257 aa10.11□□□□□ -0.79
CCDC28B-202ENST00000421922 KRTAP13-2Q52LG2 175 aa10.11□□□□□ -0.79
CCDC28B-202ENST00000421922 PRR26Q8N8Z3 221 aa10.1□□□□□ -0.79
CCDC28B-202ENST00000421922 DMBT1Q9UGM3 2413 aaPredicted RBP10.1□□□□□ -0.79
CCDC28B-202ENST00000421922 A0A1B0GW54 56 aa10.09□□□□□ -0.79
CCDC28B-202ENST00000421922 HRCT1Q6UXD1 115 aa10.08□□□□□ -0.8
CCDC28B-202ENST00000421922 C4orf48Q5BLP8 95 aa10.07□□□□□ -0.8
CCDC28B-202ENST00000421922 Q6Q795 121 aa10.07□□□□□ -0.8
CCDC28B-202ENST00000421922 UBL5Q9BZL1 73 aa10.07□□□□□ -0.8
CCDC28B-202ENST00000421922 A0A087WSZ3 146 aa10.04□□□□□ -0.8
CCDC28B-202ENST00000421922 TRBV7-7A0A0K0K1E9 115 aa10.04□□□□□ -0.8
CCDC28B-202ENST00000421922 CD164Q04900 197 aa10.04□□□□□ -0.8
CCDC28B-202ENST00000421922 LINC00846Q9NV44 126 aa10.03□□□□□ -0.8
CCDC28B-202ENST00000421922 SS18L2Q9UHA2 77 aa10.02□□□□□ -0.81
CCDC28B-202ENST00000421922 PKHD1L1Q86WI1 4243 aa10.01□□□□□ -0.81
CCDC28B-202ENST00000421922 NREPQ16612 68 aa10.01□□□□□ -0.81
CCDC28B-202ENST00000421922 LINC00304Q8N9R0 145 aa10.01□□□□□ -0.81
CCDC28B-202ENST00000421922 SPAG11AQ6PDA7 123 aa9.99□□□□□ -0.81
CCDC28B-202ENST00000421922 Q6ZVQ6 151 aa9.98□□□□□ -0.81
CCDC28B-202ENST00000421922 LIMD2Q9BT23 127 aa9.98□□□□□ -0.81
CCDC28B-202ENST00000421922 SPINK1P00995 79 aa9.95□□□□□ -0.82
CCDC28B-202ENST00000421922 LINC00643Q86TS7 51 aa9.95□□□□□ -0.82
CCDC28B-202ENST00000421922 MYCBP2O75592 4640 aa9.95□□□□□ -0.82
CCDC28B-202ENST00000421922 FLG2Q5D862 2391 aaPredicted RBP9.94□□□□□ -0.82
CCDC28B-202ENST00000421922 CDIP1Q9H305 208 aa9.94□□□□□ -0.82
CCDC28B-202ENST00000421922 OXTP01178 125 aa9.91□□□□□ -0.82
CCDC28B-202ENST00000421922 ATP5EP2Q5VTU8 51 aa9.9□□□□□ -0.82
CCDC28B-202ENST00000421922 BPY2O14599 106 aa9.9□□□□□ -0.83
CCDC28B-202ENST00000421922 KRTAP10-8P60410 259 aa9.89□□□□□ -0.83
CCDC28B-202ENST00000421922 RPS29P62273 56 aaKnown RBP9.89□□□□□ -0.83
CCDC28B-202ENST00000421922 SIGMAR1Q99720 223 aa9.88□□□□□ -0.83
CCDC28B-202ENST00000421922 Q5XG85 94 aa9.87□□□□□ -0.83
CCDC28B-202ENST00000421922 IGKV3D-7A0A0C4DH55 119 aa9.86□□□□□ -0.83
CCDC28B-202ENST00000421922 J3KT08 172 aa9.85□□□□□ -0.83
CCDC28B-202ENST00000421922 ASB16-AS1Q495Z4 193 aa9.85□□□□□ -0.83
CCDC28B-202ENST00000421922 CXCL6P80162 114 aa9.84□□□□□ -0.83
CCDC28B-202ENST00000421922 DEFB116Q30KQ4 102 aa9.84□□□□□ -0.83
CCDC28B-202ENST00000421922 LINC00472Q9H8W2 130 aa9.83□□□□□ -0.84
CCDC28B-202ENST00000421922 IGKV4-1P06312 121 aa9.82□□□□□ -0.84
CCDC28B-202ENST00000421922 KRTAP29-1A8MX34 341 aaPredicted RBP9.81□□□□□ -0.84
CCDC28B-202ENST00000421922 MT-ATP8P03928 68 aa9.81□□□□□ -0.84
CCDC28B-202ENST00000421922 NDUFB1O75438 58 aa9.79□□□□□ -0.84
CCDC28B-202ENST00000421922 MT1HL1P0DM35 61 aa9.79□□□□□ -0.84
CCDC28B-202ENST00000421922 HIST1H4AP62805 103 aaKnown RBP9.79□□□□□ -0.84
CCDC28B-202ENST00000421922 Q96NJ1 140 aa9.79□□□□□ -0.84
CCDC28B-202ENST00000421922 LRP1Q07954 4544 aaKnown RBP9.78□□□□□ -0.84
CCDC28B-202ENST00000421922 J3QL48 77 aa9.78□□□□□ -0.84
CCDC28B-202ENST00000421922 FAT3Q8TDW7 4589 aa9.77□□□□□ -0.85
CCDC28B-202ENST00000421922 C1orf195Q5TG92 126 aa9.77□□□□□ -0.85
CCDC28B-202ENST00000421922 UBR4Q5T4S7 5183 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 99.7 ms