RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 CIRBP-AS1Q8TBR5 109 aa3.71□□□□□ -1.82
HMGB3-202ENST00000419110 Q9BRP9 147 aa3.71□□□□□ -1.82
HMGB3-202ENST00000419110 LAMTOR3Q9UHA4 124 aa3.71□□□□□ -1.82
HMGB3-202ENST00000419110 ZNF706Q9Y5V0 76 aaPredicted RBP3.71□□□□□ -1.82
HMGB3-202ENST00000419110 C1orf137Q5JT78 98 aa3.7□□□□□ -1.82
HMGB3-202ENST00000419110 KRTAP5-3Q6L8H2 238 aa3.7□□□□□ -1.82
HMGB3-202ENST00000419110 SVIPQ8NHG7 77 aa3.7□□□□□ -1.82
HMGB3-202ENST00000419110 SMCR5Q8TEV8 140 aa3.7□□□□□ -1.82
HMGB3-202ENST00000419110 PSORS1C2Q9UIG4 136 aa3.7□□□□□ -1.82
HMGB3-202ENST00000419110 IGLV5-48A0A075B6I7 105 aa3.69□□□□□ -1.82
HMGB3-202ENST00000419110 TEX49A0A1B0GTD5 131 aa3.69□□□□□ -1.82
HMGB3-202ENST00000419110 A0A1B0GV72 72 aa3.69□□□□□ -1.82
HMGB3-202ENST00000419110 FAM30AQ9NZY2 134 aa3.69□□□□□ -1.82
HMGB3-202ENST00000419110 PKHD1P08F94 4074 aa3.69□□□□□ -1.82
HMGB3-202ENST00000419110 HAMPP81172 84 aa3.68□□□□□ -1.82
HMGB3-202ENST00000419110 KRTAP13-1Q8IUC0 172 aa3.68□□□□□ -1.82
HMGB3-202ENST00000419110 KRTAP11-1Q8IUC1 163 aa3.68□□□□□ -1.82
HMGB3-202ENST00000419110 C14orf132Q9NPU4 83 aa3.68□□□□□ -1.82
HMGB3-202ENST00000419110 KMT2CQ8NEZ4 4911 aaKnown RBP3.68□□□□□ -1.82
HMGB3-202ENST00000419110 FAM240AA0A1B0GVK7 77 aa3.67□□□□□ -1.82
HMGB3-202ENST00000419110 ERC2-IT1O76042 136 aa3.67□□□□□ -1.82
HMGB3-202ENST00000419110 PDE6GP18545 87 aa3.67□□□□□ -1.82
HMGB3-202ENST00000419110 NDUFV3P56181 108 aaKnown RBP3.67□□□□□ -1.82
HMGB3-202ENST00000419110 RBM3P98179 157 aaKnown RBP3.67□□□□□ -1.82
HMGB3-202ENST00000419110 DEFB105AQ8NG35 78 aa3.67□□□□□ -1.82
HMGB3-202ENST00000419110 DSCR8Q96T75 97 aa3.67□□□□□ -1.82
HMGB3-202ENST00000419110 KRTAP3-1Q9BYR8 98 aa3.67□□□□□ -1.82
HMGB3-202ENST00000419110 ZNF861PO60384 105 aa3.66□□□□□ -1.82
HMGB3-202ENST00000419110 IGLV7-43P04211 117 aa3.66□□□□□ -1.82
HMGB3-202ENST00000419110 RPL37AP61513 92 aaKnown RBP3.66□□□□□ -1.82
HMGB3-202ENST00000419110 GAGE2AQ6NT46 116 aa3.66□□□□□ -1.82
HMGB3-202ENST00000419110 ST20-AS1Q8NBB2 130 aa3.66□□□□□ -1.82
HMGB3-202ENST00000419110 OBSCN-AS1Q96MR7 158 aa3.66□□□□□ -1.82
HMGB3-202ENST00000419110 DYNC1H1Q14204 4646 aaKnown RBP3.66□□□□□ -1.82
HMGB3-202ENST00000419110 LOC110117498A0A087WWA1 95 aa3.65□□□□□ -1.83
HMGB3-202ENST00000419110 ACYP1P07311 99 aa3.65□□□□□ -1.83
HMGB3-202ENST00000419110 SPRR1BP22528 89 aa3.65□□□□□ -1.83
HMGB3-202ENST00000419110 LINC01547P58512 204 aaPredicted RBP3.65□□□□□ -1.83
HMGB3-202ENST00000419110 Q8N377 158 aa3.65□□□□□ -1.83
HMGB3-202ENST00000419110 SPRR4Q96PI1 79 aa3.65□□□□□ -1.83
HMGB3-202ENST00000419110 LRP1BQ9NZR2 4599 aa3.65□□□□□ -1.83
HMGB3-202ENST00000419110 TRBV7-4A0A0J9YYF1 115 aa3.64□□□□□ -1.83
HMGB3-202ENST00000419110 C9orf153Q5TBE3 101 aa3.64□□□□□ -1.83
HMGB3-202ENST00000419110 C3orf22Q8N5N4 141 aa3.64□□□□□ -1.83
HMGB3-202ENST00000419110 VPS25Q9BRG1 176 aa3.64□□□□□ -1.83
HMGB3-202ENST00000419110 CCKP06307 115 aa3.63□□□□□ -1.83
HMGB3-202ENST00000419110 LINC00483Q53H64 154 aa3.63□□□□□ -1.83
HMGB3-202ENST00000419110 Q6JHZ5 121 aa3.63□□□□□ -1.83
HMGB3-202ENST00000419110 Q6ZQT0 140 aa3.63□□□□□ -1.83
HMGB3-202ENST00000419110 Q8NBF4 154 aa3.63□□□□□ -1.83
HMGB3-202ENST00000419110 APOBP04114 4563 aaKnown RBP3.62□□□□□ -1.83
HMGB3-202ENST00000419110 IGLV8-61A0A075B6I0 122 aa3.61□□□□□ -1.83
HMGB3-202ENST00000419110 CDK2AP2O75956 126 aa3.61□□□□□ -1.83
HMGB3-202ENST00000419110 SMIM29Q86T20 159 aa3.61□□□□□ -1.83
HMGB3-202ENST00000419110 IGLV9-49A0A0B4J1Y8 123 aa3.6□□□□□ -1.83
HMGB3-202ENST00000419110 A0A1B0GW54 56 aa3.6□□□□□ -1.83
HMGB3-202ENST00000419110 XGP55808 180 aa3.6□□□□□ -1.83
HMGB3-202ENST00000419110 MOBPQ13875 183 aa3.6□□□□□ -1.83
HMGB3-202ENST00000419110 FAM229BQ4G0N7 80 aa3.6□□□□□ -1.83
HMGB3-202ENST00000419110 ATP5EP2Q5VTU8 51 aa3.6□□□□□ -1.83
HMGB3-202ENST00000419110 UBL5Q9BZL1 73 aa3.6□□□□□ -1.83
HMGB3-202ENST00000419110 RYR3Q15413 4870 aa3.6□□□□□ -1.83
HMGB3-202ENST00000419110 IGFL1Q6UW32 110 aa3.59□□□□□ -1.83
HMGB3-202ENST00000419110 SPINK6Q6UWN8 80 aa3.59□□□□□ -1.83
HMGB3-202ENST00000419110 Q8N1X5 172 aa3.59□□□□□ -1.83
HMGB3-202ENST00000419110 SMR3BP02814 79 aaPredicted RBP3.58□□□□□ -1.84
HMGB3-202ENST00000419110 PKHD1L1Q86WI1 4243 aa3.57□□□□□ -1.84
HMGB3-202ENST00000419110 Q5VSD8 79 aa3.57□□□□□ -1.84
HMGB3-202ENST00000419110 LINC00643Q86TS7 51 aa3.57□□□□□ -1.84
HMGB3-202ENST00000419110 CDIP1Q9H305 208 aa3.57□□□□□ -1.84
HMGB3-202ENST00000419110 LINC00846Q9NV44 126 aa3.57□□□□□ -1.84
HMGB3-202ENST00000419110 SS18L2Q9UHA2 77 aa3.57□□□□□ -1.84
HMGB3-202ENST00000419110 VPS13BQ7Z7G8 4022 aa3.56□□□□□ -1.84
HMGB3-202ENST00000419110 A0A1W2PNM2 257 aa3.56□□□□□ -1.84
HMGB3-202ENST00000419110 CRYGAP11844 174 aa3.56□□□□□ -1.84
HMGB3-202ENST00000419110 Q6Q795 121 aa3.56□□□□□ -1.84
HMGB3-202ENST00000419110 A0A087WSZ3 146 aa3.55□□□□□ -1.84
HMGB3-202ENST00000419110 Q6ZVQ6 151 aa3.55□□□□□ -1.84
HMGB3-202ENST00000419110 SRRM2Q9UQ35 2752 aaKnown RBP3.54□□□□□ -1.84
HMGB3-202ENST00000419110 TRBV7-7A0A0K0K1E9 115 aa3.54□□□□□ -1.84
HMGB3-202ENST00000419110 KRTAP1-4P0C5Y4 121 aa3.54□□□□□ -1.84
HMGB3-202ENST00000419110 CD164Q04900 197 aa3.54□□□□□ -1.84
HMGB3-202ENST00000419110 NREPQ16612 68 aa3.54□□□□□ -1.84
HMGB3-202ENST00000419110 SIGMAR1Q99720 223 aa3.54□□□□□ -1.84
HMGB3-202ENST00000419110 KRTAP9-8Q9BYQ0 159 aa3.54□□□□□ -1.84
HMGB3-202ENST00000419110 ANAPC11Q9NYG5 84 aa3.54□□□□□ -1.84
HMGB3-202ENST00000419110 HSPG2P98160 4391 aa3.54□□□□□ -1.84
HMGB3-202ENST00000419110 A0A087X002 238 aa3.53□□□□□ -1.84
HMGB3-202ENST00000419110 MT-ATP8P03928 68 aa3.53□□□□□ -1.84
HMGB3-202ENST00000419110 KRTAP10-4P60372 401 aaPredicted RBP3.53□□□□□ -1.84
HMGB3-202ENST00000419110 CXCL6P80162 114 aa3.53□□□□□ -1.84
HMGB3-202ENST00000419110 SSBP3-AS1Q7Z2R9 100 aa3.53□□□□□ -1.84
HMGB3-202ENST00000419110 TYMSOSQ8TAI1 123 aa3.53□□□□□ -1.84
HMGB3-202ENST00000419110 LIMD2Q9BT23 127 aa3.53□□□□□ -1.84
HMGB3-202ENST00000419110 IGKV3D-7A0A0C4DH55 119 aa3.52□□□□□ -1.85
HMGB3-202ENST00000419110 A0A0G2JQZ4 141 aa3.52□□□□□ -1.85
HMGB3-202ENST00000419110 BPY2O14599 106 aa3.52□□□□□ -1.85
HMGB3-202ENST00000419110 KRTAP13-2Q52LG2 175 aa3.52□□□□□ -1.85
HMGB3-202ENST00000419110 HRCT1Q6UXD1 115 aa3.51□□□□□ -1.85
HMGB3-202ENST00000419110 IMUPQ9GZP8 106 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms