RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 LINC00337Q8N6G1 96 aa5.71□□□□□ -1.5
SYNE1-211ENST00000413186 LITAFQ99732 161 aa5.71□□□□□ -1.5
SYNE1-211ENST00000413186 A0A087WSZ3 146 aa5.7□□□□□ -1.5
SYNE1-211ENST00000413186 PLAC4Q8WY50 150 aa5.7□□□□□ -1.5
SYNE1-211ENST00000413186 IGLV7-46A0A075B6I9 117 aa5.7□□□□□ -1.5
SYNE1-211ENST00000413186 MIR22HGQ0VDD5 57 aa5.69□□□□□ -1.5
SYNE1-211ENST00000413186 KIAA0087Q14695 138 aa5.69□□□□□ -1.5
SYNE1-211ENST00000413186 RTL8CO15255 209 aa5.69□□□□□ -1.5
SYNE1-211ENST00000413186 NBEAL1Q6ZS30 2694 aa5.68□□□□□ -1.5
SYNE1-211ENST00000413186 LYSTQ99698 3801 aa5.68□□□□□ -1.5
SYNE1-211ENST00000413186 RPS28P62857 69 aaKnown RBP5.68□□□□□ -1.5
SYNE1-211ENST00000413186 FBN2P35556 2912 aa5.67□□□□□ -1.5
SYNE1-211ENST00000413186 C16orf90A8MZG2 172 aa5.67□□□□□ -1.5
SYNE1-211ENST00000413186 C22orf24Q9Y442 160 aa5.67□□□□□ -1.5
SYNE1-211ENST00000413186 KRTAP16-1A8MUX0 517 aa5.67□□□□□ -1.5
SYNE1-211ENST00000413186 SMCPP49901 116 aaPredicted RBP5.66□□□□□ -1.5
SYNE1-211ENST00000413186 PRR3P79522 188 aaKnown RBP5.66□□□□□ -1.5
SYNE1-211ENST00000413186 LINC00336Q6ZUF6 198 aa5.66□□□□□ -1.5
SYNE1-211ENST00000413186 LINC00476Q8WZB0 136 aa5.66□□□□□ -1.5
SYNE1-211ENST00000413186 PSORS1C2Q9UIG4 136 aa5.66□□□□□ -1.5
SYNE1-211ENST00000413186 CYP4F30PQ9H0H9 118 aa5.66□□□□□ -1.5
SYNE1-211ENST00000413186 PDZD2O15018 2839 aa5.65□□□□□ -1.5
SYNE1-211ENST00000413186 CASC10Q5T4H9 136 aa5.65□□□□□ -1.5
SYNE1-211ENST00000413186 NIPBLQ6KC79 2804 aaeCLIP5.65□□□□□ -1.5
SYNE1-211ENST00000413186 A0A1B0GW54 56 aa5.65□□□□□ -1.51
SYNE1-211ENST00000413186 A0A087WTM6 91 aa5.64□□□□□ -1.51
SYNE1-211ENST00000413186 C15orf56Q8N910 161 aa5.64□□□□□ -1.51
SYNE1-211ENST00000413186 A0A0D9SG42 100 aa5.63□□□□□ -1.51
SYNE1-211ENST00000413186 LOC101927531A0A1B0GV80 90 aa5.63□□□□□ -1.51
SYNE1-211ENST00000413186 LINC00167Q96N53 147 aa5.63□□□□□ -1.51
SYNE1-211ENST00000413186 SMIM29Q86T20 159 aa5.62□□□□□ -1.51
SYNE1-211ENST00000413186 C9orf163Q8N9P6 203 aa5.62□□□□□ -1.51
SYNE1-211ENST00000413186 NBEAL2Q6ZNJ1 2754 aa5.62□□□□□ -1.51
SYNE1-211ENST00000413186 NF1P21359 2839 aa5.61□□□□□ -1.51
SYNE1-211ENST00000413186 EPM2AB3EWF7 344 aa5.61□□□□□ -1.51
SYNE1-211ENST00000413186 RBM12B-AS1Q9P1G2 102 aa5.61□□□□□ -1.51
SYNE1-211ENST00000413186 TLX1NBP0CAT3 122 aa5.61□□□□□ -1.51
SYNE1-211ENST00000413186 Q1T7F1 81 aa5.61□□□□□ -1.51
SYNE1-211ENST00000413186 Q6ZRP5 223 aa5.61□□□□□ -1.51
SYNE1-211ENST00000413186 CNBPP62633 177 aaKnown RBP5.6□□□□□ -1.51
SYNE1-211ENST00000413186 BCE1O60756 84 aa5.6□□□□□ -1.51
SYNE1-211ENST00000413186 ELOF1P60002 83 aaKnown RBP5.59□□□□□ -1.51
SYNE1-211ENST00000413186 MXRA5Q9NR99 2828 aa5.59□□□□□ -1.51
SYNE1-211ENST00000413186 MOBPQ13875 183 aa5.59□□□□□ -1.51
SYNE1-211ENST00000413186 Q8NBF4 154 aa5.59□□□□□ -1.51
SYNE1-211ENST00000413186 IGLV5-48A0A075B6I7 105 aa5.58□□□□□ -1.52
SYNE1-211ENST00000413186 IGLV6-57P01721 117 aa5.58□□□□□ -1.52
SYNE1-211ENST00000413186 FAM218AQ96MZ4 157 aa5.58□□□□□ -1.52
SYNE1-211ENST00000413186 LOC110117498A0A087WWA1 95 aa5.58□□□□□ -1.52
SYNE1-211ENST00000413186 Q6ZQT0 140 aa5.58□□□□□ -1.52
SYNE1-211ENST00000413186 LINC00846Q9NV44 126 aa5.58□□□□□ -1.52
SYNE1-211ENST00000413186 CHTF8P0CG12 524 aa5.57□□□□□ -1.52
SYNE1-211ENST00000413186 PRR15Q8IV56 129 aa5.57□□□□□ -1.52
SYNE1-211ENST00000413186 PHF5AQ7RTV0 110 aaKnown RBP5.57□□□□□ -1.52
SYNE1-211ENST00000413186 SMCR5Q8TEV8 140 aa5.57□□□□□ -1.52
SYNE1-211ENST00000413186 TP53AIP1Q9HCN2 124 aa5.56□□□□□ -1.52
SYNE1-211ENST00000413186 H3BPC8 53 aa5.56□□□□□ -1.52
SYNE1-211ENST00000413186 IGLV7-43P04211 117 aa5.56□□□□□ -1.52
SYNE1-211ENST00000413186 SPINK7P58062 85 aa5.56□□□□□ -1.52
SYNE1-211ENST00000413186 COA5Q86WW8 74 aa5.54□□□□□ -1.52
SYNE1-211ENST00000413186 COX6B2Q6YFQ2 88 aa5.54□□□□□ -1.52
SYNE1-211ENST00000413186 FAM104AQ969W3 186 aa5.54□□□□□ -1.52
SYNE1-211ENST00000413186 OTOGQ6ZRI0 2925 aa5.54□□□□□ -1.52
SYNE1-211ENST00000413186 SPACA4Q8TDM5 124 aa5.54□□□□□ -1.52
SYNE1-211ENST00000413186 Q6ZRX8 168 aa5.54□□□□□ -1.52
SYNE1-211ENST00000413186 RPL37AP61513 92 aaKnown RBP5.53□□□□□ -1.52
SYNE1-211ENST00000413186 KCNQ1DNQ9H478 68 aa5.52□□□□□ -1.53
SYNE1-211ENST00000413186 TNP2Q05952 138 aa5.52□□□□□ -1.53
SYNE1-211ENST00000413186 IGLV1-50A0A075B6I6 118 aa5.52□□□□□ -1.53
SYNE1-211ENST00000413186 PRAC1Q96KF2 57 aa5.52□□□□□ -1.53
SYNE1-211ENST00000413186 LCE6AA0A183 80 aa5.52□□□□□ -1.53
SYNE1-211ENST00000413186 EIF4EBP3O60516 100 aaPredicted RBP5.51□□□□□ -1.53
SYNE1-211ENST00000413186 FAM168BA1KXE4 195 aa5.51□□□□□ -1.53
SYNE1-211ENST00000413186 STAB2Q8WWQ8 2551 aa5.49□□□□□ -1.53
SYNE1-211ENST00000413186 DMAC1Q96GE9 116 aa5.49□□□□□ -1.53
SYNE1-211ENST00000413186 IGLV5-37A0A075B6J1 123 aa5.48□□□□□ -1.53
SYNE1-211ENST00000413186 LINC00528Q8N1L1 170 aa5.48□□□□□ -1.53
SYNE1-211ENST00000413186 KRTAP1-5Q9BYS1 174 aa5.47□□□□□ -1.53
SYNE1-211ENST00000413186 NDUFAF8A1L188 74 aa5.47□□□□□ -1.53
SYNE1-211ENST00000413186 SEC61BP60468 96 aaKnown RBP5.46□□□□□ -1.54
SYNE1-211ENST00000413186 A0A1W2PNN7 141 aa5.46□□□□□ -1.54
SYNE1-211ENST00000413186 ZNF861PO60384 105 aa5.45□□□□□ -1.54
SYNE1-211ENST00000413186 KRTAP26-1Q6PEX3 210 aa5.45□□□□□ -1.54
SYNE1-211ENST00000413186 Q6ZR54 194 aa5.45□□□□□ -1.54
SYNE1-211ENST00000413186 TRBV7-4A0A0J9YYF1 115 aa5.45□□□□□ -1.54
SYNE1-211ENST00000413186 OBSCN-AS1Q96MR7 158 aa5.43□□□□□ -1.54
SYNE1-211ENST00000413186 H1FX-AS1Q4G0G2 97 aa5.43□□□□□ -1.54
SYNE1-211ENST00000413186 COL7A1Q02388 2944 aa5.42□□□□□ -1.54
SYNE1-211ENST00000413186 LINC00313P59037 77 aa5.42□□□□□ -1.54
SYNE1-211ENST00000413186 TYMSOSQ8TAI1 123 aa5.41□□□□□ -1.54
SYNE1-211ENST00000413186 ST20-AS1Q8NBB2 130 aa5.41□□□□□ -1.54
SYNE1-211ENST00000413186 CSAG1Q6PB30 78 aa5.4□□□□□ -1.55
SYNE1-211ENST00000413186 PLAC8Q9NZF1 115 aa5.4□□□□□ -1.55
SYNE1-211ENST00000413186 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.4□□□□□ -1.55
SYNE1-211ENST00000413186 Q96NJ1 140 aa5.39□□□□□ -1.55
SYNE1-211ENST00000413186 TENM1Q9UKZ4 2725 aa5.39□□□□□ -1.55
SYNE1-211ENST00000413186 SMR3BP02814 79 aaPredicted RBP5.39□□□□□ -1.55
SYNE1-211ENST00000413186 MRPL34Q9BQ48 92 aaKnown RBP5.39□□□□□ -1.55
SYNE1-211ENST00000413186 CMYA5Q8N3K9 4069 aa5.37□□□□□ -1.55
SYNE1-211ENST00000413186 Q8N377 158 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms