RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 LINC00336Q6ZUF6 198 aa7.27□□□□□ -1.24
PTPRF-204ENST00000412568 WWC2-AS2Q96NR7 200 aa7.27□□□□□ -1.25
PTPRF-204ENST00000412568 APLNQ9ULZ1 77 aa7.27□□□□□ -1.25
PTPRF-204ENST00000412568 IGLV1-50A0A075B6I6 118 aa7.27□□□□□ -1.25
PTPRF-204ENST00000412568 Q8NBF4 154 aa7.26□□□□□ -1.25
PTPRF-204ENST00000412568 KCNQ1DNQ9H478 68 aa7.26□□□□□ -1.25
PTPRF-204ENST00000412568 K7ERS5 55 aa7.25□□□□□ -1.25
PTPRF-204ENST00000412568 Q8NDZ9 215 aa7.25□□□□□ -1.25
PTPRF-204ENST00000412568 VWFP04275 2813 aa7.25□□□□□ -1.25
PTPRF-204ENST00000412568 LIMD2Q9BT23 127 aa7.24□□□□□ -1.25
PTPRF-204ENST00000412568 ERC2-IT1O76042 136 aa7.24□□□□□ -1.25
PTPRF-204ENST00000412568 ANAPC11Q9NYG5 84 aa7.24□□□□□ -1.25
PTPRF-204ENST00000412568 LINC01600Q96MT4 127 aa7.23□□□□□ -1.25
PTPRF-204ENST00000412568 RPL37AP61513 92 aaKnown RBP7.23□□□□□ -1.25
PTPRF-204ENST00000412568 H7BZZ5 65 aa7.23□□□□□ -1.25
PTPRF-204ENST00000412568 SPINK1P00995 79 aa7.23□□□□□ -1.25
PTPRF-204ENST00000412568 SPAG11AQ6PDA7 123 aa7.22□□□□□ -1.25
PTPRF-204ENST00000412568 A0A087WTM6 91 aa7.22□□□□□ -1.25
PTPRF-204ENST00000412568 Q8N377 158 aa7.22□□□□□ -1.25
PTPRF-204ENST00000412568 C9orf163Q8N9P6 203 aa7.22□□□□□ -1.25
PTPRF-204ENST00000412568 A8MUN3 132 aa7.21□□□□□ -1.25
PTPRF-204ENST00000412568 KLKP1Q107X0 134 aa7.21□□□□□ -1.25
PTPRF-204ENST00000412568 TRBV7-4A0A0J9YYF1 115 aa7.2□□□□□ -1.26
PTPRF-204ENST00000412568 TENM3Q9P273 2699 aa7.2□□□□□ -1.26
PTPRF-204ENST00000412568 SPACA4Q8TDM5 124 aa7.19□□□□□ -1.26
PTPRF-204ENST00000412568 K7EQZ3 153 aa7.18□□□□□ -1.26
PTPRF-204ENST00000412568 PDZD2O15018 2839 aa7.18□□□□□ -1.26
PTPRF-204ENST00000412568 PKD1L1Q8TDX9 2849 aa7.18□□□□□ -1.26
PTPRF-204ENST00000412568 OBSCN-AS1Q96MR7 158 aa7.17□□□□□ -1.26
PTPRF-204ENST00000412568 KRTAP1-5Q9BYS1 174 aa7.17□□□□□ -1.26
PTPRF-204ENST00000412568 SMR3BP02814 79 aaPredicted RBP7.16□□□□□ -1.26
PTPRF-204ENST00000412568 TLX1NBP0CAT3 122 aa7.15□□□□□ -1.26
PTPRF-204ENST00000412568 TRAV22A0A0B4J277 110 aa7.15□□□□□ -1.26
PTPRF-204ENST00000412568 A0A1B0GW54 56 aa7.15□□□□□ -1.27
PTPRF-204ENST00000412568 TNP2Q05952 138 aa7.14□□□□□ -1.27
PTPRF-204ENST00000412568 IGFL1Q6UW32 110 aa7.14□□□□□ -1.27
PTPRF-204ENST00000412568 BSNQ9UPA5 3926 aa7.13□□□□□ -1.27
PTPRF-204ENST00000412568 IGKV2D-30A0A075B6S6 120 aa7.12□□□□□ -1.27
PTPRF-204ENST00000412568 IGKV2-30P06310 120 aa7.12□□□□□ -1.27
PTPRF-204ENST00000412568 PSORS1C2Q9UIG4 136 aa7.12□□□□□ -1.27
PTPRF-204ENST00000412568 PLA2G2DQ9UNK4 145 aa7.11□□□□□ -1.27
PTPRF-204ENST00000412568 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.11□□□□□ -1.27
PTPRF-204ENST00000412568 A0A1W2PNM2 257 aa7.11□□□□□ -1.27
PTPRF-204ENST00000412568 CNBPP62633 177 aaKnown RBP7.11□□□□□ -1.27
PTPRF-204ENST00000412568 A0A1B0GU69 56 aa7.09□□□□□ -1.27
PTPRF-204ENST00000412568 CYSTM1Q9H1C7 97 aa7.09□□□□□ -1.27
PTPRF-204ENST00000412568 TP53AIP1Q9HCN2 124 aa7.09□□□□□ -1.27
PTPRF-204ENST00000412568 H3BPC8 53 aa7.08□□□□□ -1.28
PTPRF-204ENST00000412568 PLA2G1BP04054 148 aaKnown RBP7.08□□□□□ -1.28
PTPRF-204ENST00000412568 KRTAP26-1Q6PEX3 210 aa7.07□□□□□ -1.28
PTPRF-204ENST00000412568 ZNF861PO60384 105 aa7.07□□□□□ -1.28
PTPRF-204ENST00000412568 IGLV8-61A0A075B6I0 122 aa7.06□□□□□ -1.28
PTPRF-204ENST00000412568 TYMSOSQ8TAI1 123 aa7.06□□□□□ -1.28
PTPRF-204ENST00000412568 COA5Q86WW8 74 aa7.06□□□□□ -1.28
PTPRF-204ENST00000412568 ATP11AUNQ6ZP68 121 aa7.05□□□□□ -1.28
PTPRF-204ENST00000412568 ACYP2P14621 99 aa7.05□□□□□ -1.28
PTPRF-204ENST00000412568 IGLV5-48A0A075B6I7 105 aa7.05□□□□□ -1.28
PTPRF-204ENST00000412568 IGLV5-37A0A075B6J1 123 aa7.03□□□□□ -1.28
PTPRF-204ENST00000412568 A8MWP4 228 aa7.03□□□□□ -1.28
PTPRF-204ENST00000412568 DMBT1Q9UGM3 2413 aaPredicted RBP7.02□□□□□ -1.29
PTPRF-204ENST00000412568 C7orf65Q6ZTY9 151 aa7□□□□□ -1.29
PTPRF-204ENST00000412568 PRR15Q8IV56 129 aa7□□□□□ -1.29
PTPRF-204ENST00000412568 IGLV7-43P04211 117 aa7□□□□□ -1.29
PTPRF-204ENST00000412568 LOC101927531A0A1B0GV80 90 aa6.99□□□□□ -1.29
PTPRF-204ENST00000412568 SPRR4Q96PI1 79 aa6.99□□□□□ -1.29
PTPRF-204ENST00000412568 CYP4F30PQ9H0H9 118 aa6.99□□□□□ -1.29
PTPRF-204ENST00000412568 FAM229AH3BQW9 127 aa6.98□□□□□ -1.29
PTPRF-204ENST00000412568 OCR1Q9BZK8 76 aa6.98□□□□□ -1.29
PTPRF-204ENST00000412568 TENM2Q9NT68 2774 aa6.97□□□□□ -1.29
PTPRF-204ENST00000412568 PANO1I0J062 215 aa6.96□□□□□ -1.29
PTPRF-204ENST00000412568 Q5XG85 94 aa6.96□□□□□ -1.29
PTPRF-204ENST00000412568 C8orf87E5RJ46 101 aa6.96□□□□□ -1.3
PTPRF-204ENST00000412568 LINC00313P59037 77 aa6.96□□□□□ -1.3
PTPRF-204ENST00000412568 FLG2Q5D862 2391 aaPredicted RBP6.95□□□□□ -1.3
PTPRF-204ENST00000412568 MRPL34Q9BQ48 92 aaKnown RBP6.95□□□□□ -1.3
PTPRF-204ENST00000412568 SPRR1AP35321 89 aa6.95□□□□□ -1.3
PTPRF-204ENST00000412568 DSCR10P59022 87 aa6.95□□□□□ -1.3
PTPRF-204ENST00000412568 CD164Q04900 197 aa6.94□□□□□ -1.3
PTPRF-204ENST00000412568 TGP01266 2768 aa6.93□□□□□ -1.3
PTPRF-204ENST00000412568 Q96NJ1 140 aa6.93□□□□□ -1.3
PTPRF-204ENST00000412568 FP248Q71RG6 208 aaPredicted RBP6.93□□□□□ -1.3
PTPRF-204ENST00000412568 C8orf17Q9NRJ1 99 aa6.93□□□□□ -1.3
PTPRF-204ENST00000412568 OXTP01178 125 aa6.92□□□□□ -1.3
PTPRF-204ENST00000412568 FAM229BQ4G0N7 80 aa6.9□□□□□ -1.3
PTPRF-204ENST00000412568 KRTAP10-2P60368 255 aa6.9□□□□□ -1.31
PTPRF-204ENST00000412568 SSBP3-AS1Q7Z2R9 100 aa6.9□□□□□ -1.31
PTPRF-204ENST00000412568 VPS13CQ709C8 3753 aa6.9□□□□□ -1.31
PTPRF-204ENST00000412568 C9orf92A6NGG3 77 aa6.89□□□□□ -1.31
PTPRF-204ENST00000412568 KTN1-AS1Q86SY8 53 aa6.89□□□□□ -1.31
PTPRF-204ENST00000412568 TRRAPQ9Y4A5 3859 aa6.88□□□□□ -1.31
PTPRF-204ENST00000412568 UQCR11O14957 56 aa6.88□□□□□ -1.31
PTPRF-204ENST00000412568 A0A1B0GVX0 72 aa6.87□□□□□ -1.31
PTPRF-204ENST00000412568 PRR26Q8N8Z3 221 aa6.87□□□□□ -1.31
PTPRF-204ENST00000412568 LINC00304Q8N9R0 145 aa6.87□□□□□ -1.31
PTPRF-204ENST00000412568 Q1T7F1 81 aa6.84□□□□□ -1.31
PTPRF-204ENST00000412568 KRTAP11-1Q8IUC1 163 aa6.83□□□□□ -1.32
PTPRF-204ENST00000412568 SPANXA2-OT1Q8N9U9 137 aa6.83□□□□□ -1.32
PTPRF-204ENST00000412568 KRTAP4-16G5E9R7 235 aaPredicted RBP6.83□□□□□ -1.32
PTPRF-204ENST00000412568 MIR22HGQ0VDD5 57 aa6.83□□□□□ -1.32
PTPRF-204ENST00000412568 PLAC8Q9NZF1 115 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms