RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 DNAH17Q9UFH2 4485 aa12.47□□□□□ -0.41
USP39-204ENST00000409766 C1orf134Q5TEV5 83 aa12.46□□□□□ -0.41
USP39-204ENST00000409766 BCE1O60756 84 aa12.45□□□□□ -0.42
USP39-204ENST00000409766 UBE2AP49459 152 aa12.45□□□□□ -0.42
USP39-204ENST00000409766 IGLV8-61A0A075B6I0 122 aa12.45□□□□□ -0.42
USP39-204ENST00000409766 WWC2-AS2Q96NR7 200 aa12.45□□□□□ -0.42
USP39-204ENST00000409766 C9orf153Q5TBE3 101 aa12.44□□□□□ -0.42
USP39-204ENST00000409766 KRTAP13-1Q8IUC0 172 aa12.44□□□□□ -0.42
USP39-204ENST00000409766 LY6G6CO95867 125 aa12.44□□□□□ -0.42
USP39-204ENST00000409766 SPRR1BP22528 89 aa12.44□□□□□ -0.42
USP39-204ENST00000409766 IGFL1Q6UW32 110 aa12.43□□□□□ -0.42
USP39-204ENST00000409766 CRYGAP11844 174 aa12.42□□□□□ -0.42
USP39-204ENST00000409766 BPY2O14599 106 aa12.41□□□□□ -0.42
USP39-204ENST00000409766 DNAH6Q9C0G6 4158 aa12.4□□□□□ -0.42
USP39-204ENST00000409766 A0A0G2JQZ4 141 aa12.4□□□□□ -0.42
USP39-204ENST00000409766 Q8N9L7 120 aa12.38□□□□□ -0.43
USP39-204ENST00000409766 IGKV4-1P06312 121 aa12.38□□□□□ -0.43
USP39-204ENST00000409766 SS18L2Q9UHA2 77 aa12.38□□□□□ -0.43
USP39-204ENST00000409766 IGLV5-52A0A0A0MRZ9 124 aa12.37□□□□□ -0.43
USP39-204ENST00000409766 PLAC8Q9NZF1 115 aa12.36□□□□□ -0.43
USP39-204ENST00000409766 DNAH8Q96JB1 4490 aa12.31□□□□□ -0.44
USP39-204ENST00000409766 TRAV7A0A075B6U4 112 aa12.31□□□□□ -0.44
USP39-204ENST00000409766 SMIM20Q8N5G0 67 aa12.31□□□□□ -0.44
USP39-204ENST00000409766 CYSTM1Q9H1C7 97 aa12.3□□□□□ -0.44
USP39-204ENST00000409766 PSORS1C2Q9UIG4 136 aa12.3□□□□□ -0.44
USP39-204ENST00000409766 FRAS1Q86XX4 4008 aa12.29□□□□□ -0.44
USP39-204ENST00000409766 ALMS1Q8TCU4 4167 aa12.27□□□□□ -0.44
USP39-204ENST00000409766 DSCR10P59022 87 aa12.27□□□□□ -0.44
USP39-204ENST00000409766 A0A087WSZ3 146 aa12.27□□□□□ -0.45
USP39-204ENST00000409766 LINC00483Q53H64 154 aa12.23□□□□□ -0.45
USP39-204ENST00000409766 DNAH11Q96DT5 4516 aa12.23□□□□□ -0.45
USP39-204ENST00000409766 DNAH5Q8TE73 4624 aa12.21□□□□□ -0.45
USP39-204ENST00000409766 KRTAP10-2P60368 255 aa12.21□□□□□ -0.46
USP39-204ENST00000409766 K7EQZ3 153 aa12.2□□□□□ -0.46
USP39-204ENST00000409766 C20orf197Q8N268 126 aa12.2□□□□□ -0.46
USP39-204ENST00000409766 ZNF861PO60384 105 aa12.2□□□□□ -0.46
USP39-204ENST00000409766 HYDINQ4G0P3 5121 aa12.19□□□□□ -0.46
USP39-204ENST00000409766 ZNF706Q9Y5V0 76 aaPredicted RBP12.18□□□□□ -0.46
USP39-204ENST00000409766 DEFB116Q30KQ4 102 aa12.17□□□□□ -0.46
USP39-204ENST00000409766 OCR1Q9BZK8 76 aa12.16□□□□□ -0.46
USP39-204ENST00000409766 IGLV9-49A0A0B4J1Y8 123 aa12.15□□□□□ -0.46
USP39-204ENST00000409766 FAM30AQ9NZY2 134 aa12.15□□□□□ -0.46
USP39-204ENST00000409766 PKD1P98161 4303 aa12.14□□□□□ -0.47
USP39-204ENST00000409766 FAT2Q9NYQ8 4349 aa12.13□□□□□ -0.47
USP39-204ENST00000409766 KLKP1Q107X0 134 aa12.13□□□□□ -0.47
USP39-204ENST00000409766 TMEM258P61165 79 aa12.12□□□□□ -0.47
USP39-204ENST00000409766 RPL37AP61513 92 aaKnown RBP12.12□□□□□ -0.47
USP39-204ENST00000409766 CIRBP-AS1Q8TBR5 109 aa12.12□□□□□ -0.47
USP39-204ENST00000409766 LINC00472Q9H8W2 130 aa12.11□□□□□ -0.47
USP39-204ENST00000409766 IGLV7-43P04211 117 aa12.11□□□□□ -0.47
USP39-204ENST00000409766 ANAPC11Q9NYG5 84 aa12.08□□□□□ -0.48
USP39-204ENST00000409766 HCG22E2RYF7 251 aa12.08□□□□□ -0.48
USP39-204ENST00000409766 Q6ZSA8 131 aa12.08□□□□□ -0.48
USP39-204ENST00000409766 SNURFQ9Y675 71 aa12.07□□□□□ -0.48
USP39-204ENST00000409766 KRTAP10-1P60331 282 aa12.05□□□□□ -0.48
USP39-204ENST00000409766 MOBPQ13875 183 aa12.05□□□□□ -0.48
USP39-204ENST00000409766 H7BZZ5 65 aa12.04□□□□□ -0.48
USP39-204ENST00000409766 TMEM254Q8TBM7 123 aa12.04□□□□□ -0.48
USP39-204ENST00000409766 A8MWP4 228 aa12.02□□□□□ -0.49
USP39-204ENST00000409766 PRR15Q8IV56 129 aa12.01□□□□□ -0.49
USP39-204ENST00000409766 HRCT1Q6UXD1 115 aa11.99□□□□□ -0.49
USP39-204ENST00000409766 Q96NJ1 140 aa11.99□□□□□ -0.49
USP39-204ENST00000409766 J3KT08 172 aa11.98□□□□□ -0.49
USP39-204ENST00000409766 LCE6AA0A183 80 aa11.98□□□□□ -0.49
USP39-204ENST00000409766 WFDC13Q8IUB5 93 aa11.98□□□□□ -0.49
USP39-204ENST00000409766 A0A0U1RQV1 116 aa11.97□□□□□ -0.49
USP39-204ENST00000409766 KRTAP29-1A8MX34 341 aaPredicted RBP11.97□□□□□ -0.49
USP39-204ENST00000409766 LRP1BQ9NZR2 4599 aa11.96□□□□□ -0.49
USP39-204ENST00000409766 NDUFC1O43677 76 aa11.96□□□□□ -0.49
USP39-204ENST00000409766 SACSQ9NZJ4 4579 aa11.95□□□□□ -0.5
USP39-204ENST00000409766 RPS28P62857 69 aaKnown RBP11.93□□□□□ -0.5
USP39-204ENST00000409766 FAM236DA0A1B0GTK5 79 aa11.91□□□□□ -0.5
USP39-204ENST00000409766 FAM236CP0DP71 79 aa11.91□□□□□ -0.5
USP39-204ENST00000409766 CASC2Q6XLA1 102 aa11.91□□□□□ -0.5
USP39-204ENST00000409766 NDUFB1O75438 58 aa11.89□□□□□ -0.51
USP39-204ENST00000409766 C5orf47Q569G3 176 aa11.87□□□□□ -0.51
USP39-204ENST00000409766 MMP24-AS1A0A0U1RRL7 71 aa11.86□□□□□ -0.51
USP39-204ENST00000409766 SSBP3-AS1Q7Z2R9 100 aa11.86□□□□□ -0.51
USP39-204ENST00000409766 PKHD1P08F94 4074 aa11.84□□□□□ -0.51
USP39-204ENST00000409766 VPS13BQ7Z7G8 4022 aa11.83□□□□□ -0.52
USP39-204ENST00000409766 CD164Q04900 197 aa11.83□□□□□ -0.52
USP39-204ENST00000409766 ZCCHC13Q8WW36 166 aaKnown RBP11.82□□□□□ -0.52
USP39-204ENST00000409766 A0A087X002 238 aa11.81□□□□□ -0.52
USP39-204ENST00000409766 hDV103S1A0JD37 113 aa11.8□□□□□ -0.52
USP39-204ENST00000409766 OXTP01178 125 aa11.8□□□□□ -0.52
USP39-204ENST00000409766 ASB16-AS1Q495Z4 193 aa11.79□□□□□ -0.52
USP39-204ENST00000409766 A0A1B0GVX0 72 aa11.79□□□□□ -0.52
USP39-204ENST00000409766 KRTAP13-2Q52LG2 175 aa11.78□□□□□ -0.52
USP39-204ENST00000409766 ATP5EP56381 51 aaPredicted RBP11.77□□□□□ -0.52
USP39-204ENST00000409766 FAM229BQ4G0N7 80 aa11.77□□□□□ -0.52
USP39-204ENST00000409766 LINC00336Q6ZUF6 198 aa11.77□□□□□ -0.52
USP39-204ENST00000409766 C8orf17Q9NRJ1 99 aa11.77□□□□□ -0.52
USP39-204ENST00000409766 IGHV6-1A0A0B4J1U7 121 aa11.75□□□□□ -0.53
USP39-204ENST00000409766 CDK2AP2O75956 126 aa11.75□□□□□ -0.53
USP39-204ENST00000409766 KRTAP1-4P0C5Y4 121 aa11.75□□□□□ -0.53
USP39-204ENST00000409766 SERP1Q9Y6X1 66 aa11.75□□□□□ -0.53
USP39-204ENST00000409766 MP68P56378 58 aa11.74□□□□□ -0.53
USP39-204ENST00000409766 RYR2Q92736 4967 aa11.7□□□□□ -0.54
USP39-204ENST00000409766 H0Y9P7 68 aa11.7□□□□□ -0.54
USP39-204ENST00000409766 SPINK6Q6UWN8 80 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 109.4 ms