RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 TRIAP1O43715 76 aa9.11□□□□□ -0.95
CUX2-202ENST00000397643 ERC2-IT1O76042 136 aa9.11□□□□□ -0.95
CUX2-202ENST00000397643 SNCGO76070 127 aa9.11□□□□□ -0.95
CUX2-202ENST00000397643 LINC00575Q6W349 94 aa9.11□□□□□ -0.95
CUX2-202ENST00000397643 SNHG12Q9BXW3 62 aa9.1□□□□□ -0.95
CUX2-202ENST00000397643 hADV29S1A0JD25 119 aa9.08□□□□□ -0.96
CUX2-202ENST00000397643 SCGB1C2P0DMR2 95 aa9.08□□□□□ -0.96
CUX2-202ENST00000397643 SPAG11AQ6PDA7 123 aa9.08□□□□□ -0.96
CUX2-202ENST00000397643 SPRR4Q96PI1 79 aa9.08□□□□□ -0.96
CUX2-202ENST00000397643 A0A1B0GX51 115 aa9.05□□□□□ -0.96
CUX2-202ENST00000397643 COL5A1-AS1Q5SY13 56 aa9.05□□□□□ -0.96
CUX2-202ENST00000397643 GAGE2AQ6NT46 116 aa9.05□□□□□ -0.96
CUX2-202ENST00000397643 ST20-AS1Q8NBB2 130 aa9.05□□□□□ -0.96
CUX2-202ENST00000397643 LCE2CQ5TA81 110 aa9.04□□□□□ -0.96
CUX2-202ENST00000397643 NAA38Q9BRA0 125 aaKnown RBP9.04□□□□□ -0.96
CUX2-202ENST00000397643 C9orf118A6NHY6 69 aa9.03□□□□□ -0.96
CUX2-202ENST00000397643 TAX1BP3O14907 124 aa9.03□□□□□ -0.96
CUX2-202ENST00000397643 LYRM7Q5U5X0 104 aa9.03□□□□□ -0.96
CUX2-202ENST00000397643 CLEC2BQ92478 149 aa9.03□□□□□ -0.96
CUX2-202ENST00000397643 FAM218AQ96MZ4 157 aa9.03□□□□□ -0.96
CUX2-202ENST00000397643 H3BUT2 72 aa9.02□□□□□ -0.97
CUX2-202ENST00000397643 SEC61BP60468 96 aaKnown RBP9.02□□□□□ -0.97
CUX2-202ENST00000397643 LINC00483Q53H64 154 aa9.02□□□□□ -0.97
CUX2-202ENST00000397643 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.02□□□□□ -0.97
CUX2-202ENST00000397643 DEFB105AQ8NG35 78 aa9.02□□□□□ -0.97
CUX2-202ENST00000397643 TEX49A0A1B0GTD5 131 aa9.01□□□□□ -0.97
CUX2-202ENST00000397643 Q6ZQY7 126 aa9.01□□□□□ -0.97
CUX2-202ENST00000397643 Q8NBF4 154 aa9□□□□□ -0.97
CUX2-202ENST00000397643 IGLV5-48A0A075B6I7 105 aa8.99□□□□□ -0.97
CUX2-202ENST00000397643 DNAL4O96015 105 aa8.99□□□□□ -0.97
CUX2-202ENST00000397643 SPRR1BP22528 89 aa8.99□□□□□ -0.97
CUX2-202ENST00000397643 KRTAP19-2Q3LHN2 52 aa8.99□□□□□ -0.97
CUX2-202ENST00000397643 GHRHP01286 108 aa8.98□□□□□ -0.97
CUX2-202ENST00000397643 OCIAD2Q56VL3 154 aa8.98□□□□□ -0.97
CUX2-202ENST00000397643 C4orf48Q5BLP8 95 aa8.98□□□□□ -0.97
CUX2-202ENST00000397643 LST1O00453 97 aa8.97□□□□□ -0.97
CUX2-202ENST00000397643 TRACP01848 142 aa8.97□□□□□ -0.97
CUX2-202ENST00000397643 ATXN8Q156A1 80 aa8.97□□□□□ -0.97
CUX2-202ENST00000397643 LAMTOR3Q9UHA4 124 aa8.97□□□□□ -0.97
CUX2-202ENST00000397643 A0A1W2PPM0 123 aa8.96□□□□□ -0.98
CUX2-202ENST00000397643 FABP2P12104 132 aa8.96□□□□□ -0.98
CUX2-202ENST00000397643 Q8N377 158 aa8.96□□□□□ -0.98
CUX2-202ENST00000397643 PPDPFLQ8WWR9 84 aa8.96□□□□□ -0.98
CUX2-202ENST00000397643 TRBV20-1A0A075B6N2 111 aa8.95□□□□□ -0.98
CUX2-202ENST00000397643 SPINK1P00995 79 aa8.95□□□□□ -0.98
CUX2-202ENST00000397643 H3BQ85 93 aa8.94□□□□□ -0.98
CUX2-202ENST00000397643 TCL1BO95988 128 aa8.94□□□□□ -0.98
CUX2-202ENST00000397643 XP32Q5T750 250 aa8.94□□□□□ -0.98
CUX2-202ENST00000397643 MT1HP80294 61 aa8.93□□□□□ -0.98
CUX2-202ENST00000397643 ORMDL1Q9P0S3 153 aa8.93□□□□□ -0.98
CUX2-202ENST00000397643 IGLV9-49A0A0B4J1Y8 123 aa8.92□□□□□ -0.98
CUX2-202ENST00000397643 SMIM29Q86T20 159 aa8.91□□□□□ -0.98
CUX2-202ENST00000397643 F8WEM9 126 aa8.9□□□□□ -0.98
CUX2-202ENST00000397643 MOBPQ13875 183 aa8.9□□□□□ -0.98
CUX2-202ENST00000397643 C9orf153Q5TBE3 101 aa8.9□□□□□ -0.98
CUX2-202ENST00000397643 SSBP3-AS1Q7Z2R9 100 aa8.89□□□□□ -0.99
CUX2-202ENST00000397643 TMEM256-PLSCR3K7ERE1 68 aa8.88□□□□□ -0.99
CUX2-202ENST00000397643 RPS29P62273 56 aaKnown RBP8.88□□□□□ -0.99
CUX2-202ENST00000397643 SPCS1Q9Y6A9 102 aa8.88□□□□□ -0.99
CUX2-202ENST00000397643 BAALC-AS2P0C853 105 aa8.86□□□□□ -0.99
CUX2-202ENST00000397643 LORP23490 312 aaPredicted RBP8.86□□□□□ -0.99
CUX2-202ENST00000397643 NDUFV3P56181 108 aaKnown RBP8.86□□□□□ -0.99
CUX2-202ENST00000397643 C9JAW5 83 aa8.84□□□□□ -0.99
CUX2-202ENST00000397643 H3BMG7 143 aa8.84□□□□□ -0.99
CUX2-202ENST00000397643 UBE2V1Q13404 147 aa8.84□□□□□ -0.99
CUX2-202ENST00000397643 K7EP34 96 aa8.82□□□□□ -1
CUX2-202ENST00000397643 KRTAP10-6P60371 365 aaPredicted RBP8.82□□□□□ -1
CUX2-202ENST00000397643 IGLV8-61A0A075B6I0 122 aa8.81□□□□□ -1
CUX2-202ENST00000397643 Q6JHZ5 121 aa8.81□□□□□ -1
CUX2-202ENST00000397643 GTF2H5Q6ZYL4 71 aa8.81□□□□□ -1
CUX2-202ENST00000397643 ANKRD29Q8N6D5 301 aa8.81□□□□□ -1
CUX2-202ENST00000397643 H3BT86 120 aa8.78□□□□□ -1
CUX2-202ENST00000397643 FLGP20930 4061 aaPredicted RBP8.77□□□□□ -1.01
CUX2-202ENST00000397643 PCOTHQ58A44 107 aa8.77□□□□□ -1.01
CUX2-202ENST00000397643 IGFL1Q6UW32 110 aa8.76□□□□□ -1.01
CUX2-202ENST00000397643 A0A1B0GV72 72 aa8.75□□□□□ -1.01
CUX2-202ENST00000397643 CD164Q04900 197 aa8.75□□□□□ -1.01
CUX2-202ENST00000397643 MTURNQ8N3F0 131 aa8.75□□□□□ -1.01
CUX2-202ENST00000397643 JMJD7-PLA2G4BH0Y9G9 81 aa8.74□□□□□ -1.01
CUX2-202ENST00000397643 RBM3P98179 157 aaKnown RBP8.74□□□□□ -1.01
CUX2-202ENST00000397643 A0A0G2JQZ4 141 aa8.73□□□□□ -1.01
CUX2-202ENST00000397643 HRCT1Q6UXD1 115 aa8.73□□□□□ -1.01
CUX2-202ENST00000397643 DSCR8Q96T75 97 aa8.72□□□□□ -1.01
CUX2-202ENST00000397643 LIMD2Q9BT23 127 aa8.69□□□□□ -1.02
CUX2-202ENST00000397643 PRO0461Q9UI25 63 aa8.69□□□□□ -1.02
CUX2-202ENST00000397643 TRBV7-4A0A0J9YYF1 115 aa8.68□□□□□ -1.02
CUX2-202ENST00000397643 F8W1H4 67 aa8.68□□□□□ -1.02
CUX2-202ENST00000397643 SMCPP49901 116 aaPredicted RBP8.68□□□□□ -1.02
CUX2-202ENST00000397643 TEN1Q86WV5 123 aa8.68□□□□□ -1.02
CUX2-202ENST00000397643 A0A1B0GV90 55 aa8.67□□□□□ -1.02
CUX2-202ENST00000397643 Q6Q795 121 aa8.67□□□□□ -1.02
CUX2-202ENST00000397643 OBSCN-AS1Q96MR7 158 aa8.67□□□□□ -1.02
CUX2-202ENST00000397643 TRBV7-7A0A0K0K1E9 115 aa8.66□□□□□ -1.02
CUX2-202ENST00000397643 C9orf92A6NGG3 77 aa8.66□□□□□ -1.02
CUX2-202ENST00000397643 PDE6GP18545 87 aa8.66□□□□□ -1.02
CUX2-202ENST00000397643 CCKP06307 115 aa8.65□□□□□ -1.02
CUX2-202ENST00000397643 LOC110117498A0A087WWA1 95 aa8.64□□□□□ -1.03
CUX2-202ENST00000397643 A0A1W2PNM2 257 aa8.64□□□□□ -1.03
CUX2-202ENST00000397643 KRTAP9-7A8MTY7 169 aa8.64□□□□□ -1.03
CUX2-202ENST00000397643 C14orf132Q9NPU4 83 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms