RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 TENM2Q9NT68 2774 aa8.9□□□□□ -0.98
SDC1-202ENST00000381150 Q1T7F1 81 aa8.89□□□□□ -0.99
SDC1-202ENST00000381150 PRLHP81277 87 aa8.89□□□□□ -0.99
SDC1-202ENST00000381150 LINC00476Q8WZB0 136 aa8.89□□□□□ -0.99
SDC1-202ENST00000381150 B9D2Q9BPU9 175 aa8.89□□□□□ -0.99
SDC1-202ENST00000381150 DEFB131BA0A096LNP1 70 aa8.86□□□□□ -0.99
SDC1-202ENST00000381150 A6NED7 52 aa8.86□□□□□ -0.99
SDC1-202ENST00000381150 CASC10Q5T4H9 136 aa8.86□□□□□ -0.99
SDC1-202ENST00000381150 C11orf45Q8TAV5 145 aa8.86□□□□□ -0.99
SDC1-202ENST00000381150 LINC01556Q5JQF7 62 aa8.86□□□□□ -0.99
SDC1-202ENST00000381150 H0Y9P7 68 aa8.85□□□□□ -0.99
SDC1-202ENST00000381150 PCOTHQ58A44 107 aa8.85□□□□□ -0.99
SDC1-202ENST00000381150 H0Y9J4 135 aa8.84□□□□□ -0.99
SDC1-202ENST00000381150 NDUFB1O75438 58 aa8.84□□□□□ -0.99
SDC1-202ENST00000381150 MRPL55Q7Z7F7 128 aaKnown RBP8.83□□□□□ -1
SDC1-202ENST00000381150 DNAH1Q9P2D7 4330 aa8.82□□□□□ -1
SDC1-202ENST00000381150 HUWE1Q7Z6Z7 4374 aaKnown RBP8.82□□□□□ -1
SDC1-202ENST00000381150 IGLV1-50A0A075B6I6 118 aa8.82□□□□□ -1
SDC1-202ENST00000381150 ZCCHC13Q8WW36 166 aaKnown RBP8.82□□□□□ -1
SDC1-202ENST00000381150 IGFL1Q6UW32 110 aa8.81□□□□□ -1
SDC1-202ENST00000381150 CASC2Q6XLA1 102 aa8.81□□□□□ -1
SDC1-202ENST00000381150 DNAH10OSP0CZ25 163 aa8.81□□□□□ -1
SDC1-202ENST00000381150 Q5VV11 94 aa8.8□□□□□ -1
SDC1-202ENST00000381150 UBE2AP49459 152 aa8.79□□□□□ -1
SDC1-202ENST00000381150 REG3GQ6UW15 175 aa8.79□□□□□ -1
SDC1-202ENST00000381150 SPRR4Q96PI1 79 aa8.78□□□□□ -1
SDC1-202ENST00000381150 TNP2Q05952 138 aa8.77□□□□□ -1.01
SDC1-202ENST00000381150 STAB2Q8WWQ8 2551 aa8.77□□□□□ -1.01
SDC1-202ENST00000381150 NDUFS5O43920 106 aa8.76□□□□□ -1.01
SDC1-202ENST00000381150 LINC00588Q9Y4M8 146 aa8.76□□□□□ -1.01
SDC1-202ENST00000381150 SPAG11AQ6PDA7 123 aa8.76□□□□□ -1.01
SDC1-202ENST00000381150 K7EIL1 84 aa8.76□□□□□ -1.01
SDC1-202ENST00000381150 CYP4F30PQ9H0H9 118 aa8.76□□□□□ -1.01
SDC1-202ENST00000381150 LCE6AA0A183 80 aa8.75□□□□□ -1.01
SDC1-202ENST00000381150 C16orf90A8MZG2 172 aa8.75□□□□□ -1.01
SDC1-202ENST00000381150 Q8N9P0 234 aaPredicted RBP8.74□□□□□ -1.01
SDC1-202ENST00000381150 KRTAP4-16G5E9R7 235 aaPredicted RBP8.72□□□□□ -1.01
SDC1-202ENST00000381150 KRTAP7-1Q8IUC3 87 aa8.72□□□□□ -1.01
SDC1-202ENST00000381150 A0A1B0GW54 56 aa8.71□□□□□ -1.01
SDC1-202ENST00000381150 LIMD2Q9BT23 127 aa8.71□□□□□ -1.01
SDC1-202ENST00000381150 COA5Q86WW8 74 aa8.71□□□□□ -1.02
SDC1-202ENST00000381150 TLX1NBP0CAT3 122 aa8.69□□□□□ -1.02
SDC1-202ENST00000381150 CD164Q04900 197 aa8.69□□□□□ -1.02
SDC1-202ENST00000381150 LYSTQ99698 3801 aa8.69□□□□□ -1.02
SDC1-202ENST00000381150 SPRR1AP35321 89 aa8.67□□□□□ -1.02
SDC1-202ENST00000381150 LCA10Q71F78 164 aa8.67□□□□□ -1.02
SDC1-202ENST00000381150 CHTF8P0CG12 524 aa8.66□□□□□ -1.02
SDC1-202ENST00000381150 RBM12B-AS1Q9P1G2 102 aa8.66□□□□□ -1.02
SDC1-202ENST00000381150 PLA2G2DQ9UNK4 145 aa8.66□□□□□ -1.02
SDC1-202ENST00000381150 CNBPP62633 177 aaKnown RBP8.65□□□□□ -1.02
SDC1-202ENST00000381150 KTN1-AS1Q86SY8 53 aa8.65□□□□□ -1.02
SDC1-202ENST00000381150 IGLV9-49A0A0B4J1Y8 123 aa8.64□□□□□ -1.03
SDC1-202ENST00000381150 DNAH9Q9NYC9 4486 aa8.64□□□□□ -1.03
SDC1-202ENST00000381150 PHF5AQ7RTV0 110 aaKnown RBP8.63□□□□□ -1.03
SDC1-202ENST00000381150 DNAH10Q8IVF4 4471 aa8.63□□□□□ -1.03
SDC1-202ENST00000381150 IGLV5-37A0A075B6J1 123 aa8.62□□□□□ -1.03
SDC1-202ENST00000381150 A8MWP4 228 aa8.61□□□□□ -1.03
SDC1-202ENST00000381150 DYNC2H1Q8NCM8 4307 aaKnown RBP8.61□□□□□ -1.03
SDC1-202ENST00000381150 KRTAP1-5Q9BYS1 174 aa8.6□□□□□ -1.03
SDC1-202ENST00000381150 KRTAP29-1A8MX34 341 aaPredicted RBP8.6□□□□□ -1.03
SDC1-202ENST00000381150 IGHV6-1A0A0B4J1U7 121 aa8.59□□□□□ -1.03
SDC1-202ENST00000381150 DNAH7Q8WXX0 4024 aa8.58□□□□□ -1.04
SDC1-202ENST00000381150 ATP11AUNQ6ZP68 121 aa8.58□□□□□ -1.04
SDC1-202ENST00000381150 SPANXA2-OT1Q8N9U9 137 aa8.58□□□□□ -1.04
SDC1-202ENST00000381150 LOC101927531A0A1B0GV80 90 aa8.58□□□□□ -1.04
SDC1-202ENST00000381150 SPINK7P58062 85 aa8.55□□□□□ -1.04
SDC1-202ENST00000381150 CDK2AP2O75956 126 aa8.54□□□□□ -1.04
SDC1-202ENST00000381150 SPINK6Q6UWN8 80 aa8.54□□□□□ -1.04
SDC1-202ENST00000381150 KRTAP11-1Q8IUC1 163 aa8.54□□□□□ -1.04
SDC1-202ENST00000381150 APLNQ9ULZ1 77 aa8.54□□□□□ -1.04
SDC1-202ENST00000381150 Q75L30 129 aa8.53□□□□□ -1.04
SDC1-202ENST00000381150 C9orf163Q8N9P6 203 aa8.53□□□□□ -1.04
SDC1-202ENST00000381150 MDFIQ99750 246 aa8.53□□□□□ -1.04
SDC1-202ENST00000381150 H3BPC8 53 aa8.53□□□□□ -1.04
SDC1-202ENST00000381150 PRR26Q8N8Z3 221 aa8.52□□□□□ -1.05
SDC1-202ENST00000381150 LINC00472Q9H8W2 130 aa8.51□□□□□ -1.05
SDC1-202ENST00000381150 MMP24-AS1A0A0U1RRL7 71 aa8.51□□□□□ -1.05
SDC1-202ENST00000381150 IGLV7-46A0A075B6I9 117 aa8.51□□□□□ -1.05
SDC1-202ENST00000381150 MOBPQ13875 183 aa8.51□□□□□ -1.05
SDC1-202ENST00000381150 CDC42SE1Q9NRR8 79 aa8.51□□□□□ -1.05
SDC1-202ENST00000381150 UBE2DNLQ8IWF7 75 aa8.5□□□□□ -1.05
SDC1-202ENST00000381150 PLECQ15149 4684 aaKnown RBP8.5□□□□□ -1.05
SDC1-202ENST00000381150 PRAC1Q96KF2 57 aa8.49□□□□□ -1.05
SDC1-202ENST00000381150 ANAPC11Q9NYG5 84 aa8.48□□□□□ -1.05
SDC1-202ENST00000381150 RETNLBQ9BQ08 111 aa8.47□□□□□ -1.05
SDC1-202ENST00000381150 A6NN06 94 aa8.46□□□□□ -1.05
SDC1-202ENST00000381150 C7orf65Q6ZTY9 151 aa8.46□□□□□ -1.06
SDC1-202ENST00000381150 HRES1P13985 223 aa8.45□□□□□ -1.06
SDC1-202ENST00000381150 IGLV8-61A0A075B6I0 122 aa8.43□□□□□ -1.06
SDC1-202ENST00000381150 C8orf17Q9NRJ1 99 aa8.43□□□□□ -1.06
SDC1-202ENST00000381150 LINC01558Q9Y6Z2 57 aa8.41□□□□□ -1.06
SDC1-202ENST00000381150 STARD9Q9P2P6 4700 aa8.4□□□□□ -1.07
SDC1-202ENST00000381150 A0A087X002 238 aa8.4□□□□□ -1.07
SDC1-202ENST00000381150 NOTCH2NLQ7Z3S9 236 aa8.4□□□□□ -1.07
SDC1-202ENST00000381150 ADM2Q7Z4H4 148 aa8.39□□□□□ -1.07
SDC1-202ENST00000381150 Q6ZRN7 208 aaPredicted RBP8.39□□□□□ -1.07
SDC1-202ENST00000381150 TP53AIP1Q9HCN2 124 aa8.39□□□□□ -1.07
SDC1-202ENST00000381150 PRKDCP78527 4128 aaKnown RBP8.38□□□□□ -1.07
SDC1-202ENST00000381150 VPS13DQ5THJ4 4388 aa8.38□□□□□ -1.07
SDC1-202ENST00000381150 C14orf177Q52M58 125 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 171.3 ms