RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 K7EQZ3 153 aa-0.13□□□□□ -2.43
VPS13A-206ENST00000376646 SPRR1BP22528 89 aa-0.13□□□□□ -2.43
VPS13A-206ENST00000376646 LINC01600Q96MT4 127 aa-0.13□□□□□ -2.43
VPS13A-206ENST00000376646 ABCA8O94911 1581 aa-0.13□□□□□ -2.43
VPS13A-206ENST00000376646 DIP2CQ9Y2E4 1556 aa-0.13□□□□□ -2.43
VPS13A-206ENST00000376646 TRBV7-4A0A0J9YYF1 115 aa-0.13□□□□□ -2.43
VPS13A-206ENST00000376646 LINC00959A0A1B0GUT2 108 aa-0.13□□□□□ -2.43
VPS13A-206ENST00000376646 A0A1B0GWA3 101 aa-0.13□□□□□ -2.43
VPS13A-206ENST00000376646 HSD52Q0P140 79 aa-0.13□□□□□ -2.43
VPS13A-206ENST00000376646 KRTAP19-8Q3LI54 63 aa-0.13□□□□□ -2.43
VPS13A-206ENST00000376646 GTF2H5Q6ZYL4 71 aa-0.13□□□□□ -2.43
VPS13A-206ENST00000376646 C12orf57Q99622 126 aa-0.13□□□□□ -2.43
VPS13A-206ENST00000376646 DUOX2Q9NRD8 1548 aa-0.14□□□□□ -2.43
VPS13A-206ENST00000376646 IQGAP1P46940 1657 aa-0.14□□□□□ -2.43
VPS13A-206ENST00000376646 DOT1LQ8TEK3 1739 aa-0.14□□□□□ -2.43
VPS13A-206ENST00000376646 RGPD3A6NKT7 1758 aaPredicted RBP-0.14□□□□□ -2.43
VPS13A-206ENST00000376646 RGPD4Q7Z3J3 1758 aa-0.14□□□□□ -2.43
VPS13A-206ENST00000376646 KRTAP8-1Q8IUC2 63 aa-0.14□□□□□ -2.43
VPS13A-206ENST00000376646 FXYD6Q9H0Q3 95 aa-0.14□□□□□ -2.43
VPS13A-206ENST00000376646 LRRIQ1Q96JM4 1722 aa-0.14□□□□□ -2.43
VPS13A-206ENST00000376646 DNAH2Q9P225 4427 aa-0.14□□□□□ -2.43
VPS13A-206ENST00000376646 TOGARAM1Q9Y4F4 1720 aa-0.14□□□□□ -2.43
VPS13A-206ENST00000376646 ATP7BP35670 1465 aa-0.15□□□□□ -2.43
VPS13A-206ENST00000376646 M0R2T5 61 aa-0.15□□□□□ -2.43
VPS13A-206ENST00000376646 PRO1933Q9H354 126 aa-0.15□□□□□ -2.43
VPS13A-206ENST00000376646 DMDP11532 3685 aa-0.15□□□□□ -2.43
VPS13A-206ENST00000376646 NLRP1Q9C000 1473 aa-0.15□□□□□ -2.43
VPS13A-206ENST00000376646 DEFB104AQ8WTQ1 72 aa-0.15□□□□□ -2.43
VPS13A-206ENST00000376646 PDCD11Q14690 1871 aaKnown RBP-0.15□□□□□ -2.43
VPS13A-206ENST00000376646 EFCAB5A4FU69 1503 aa-0.15□□□□□ -2.43
VPS13A-206ENST00000376646 C20orf202A1L168 122 aa-0.16□□□□□ -2.43
VPS13A-206ENST00000376646 H3BQ15 152 aa-0.16□□□□□ -2.43
VPS13A-206ENST00000376646 APLNQ9ULZ1 77 aa-0.16□□□□□ -2.43
VPS13A-206ENST00000376646 EIF2AK4Q9P2K8 1649 aaKnown RBP-0.16□□□□□ -2.43
VPS13A-206ENST00000376646 FANCAO15360 1455 aa-0.16□□□□□ -2.44
VPS13A-206ENST00000376646 DNAH8Q96JB1 4490 aa-0.16□□□□□ -2.44
VPS13A-206ENST00000376646 A0A087WVE0 104 aa-0.16□□□□□ -2.44
VPS13A-206ENST00000376646 hADV29S1A0JD25 119 aa-0.16□□□□□ -2.44
VPS13A-206ENST00000376646 SAA2P0DJI9 122 aaPredicted RBP-0.16□□□□□ -2.44
VPS13A-206ENST00000376646 KRTDAPP60985 99 aa-0.16□□□□□ -2.44
VPS13A-206ENST00000376646 XRN1Q8IZH2 1706 aaKnown RBP-0.17□□□□□ -2.44
VPS13A-206ENST00000376646 PARP4Q9UKK3 1724 aaKnown RBP-0.17□□□□□ -2.44
VPS13A-206ENST00000376646 SEC11AP67812 179 aa-0.17□□□□□ -2.44
VPS13A-206ENST00000376646 H1FX-AS1Q4G0G2 97 aa-0.17□□□□□ -2.44
VPS13A-206ENST00000376646 DEFB105AQ8NG35 78 aa-0.17□□□□□ -2.44
VPS13A-206ENST00000376646 QSER1Q2KHR3 1735 aa-0.17□□□□□ -2.44
VPS13A-206ENST00000376646 LOC730098B7Z3J9 87 aa-0.17□□□□□ -2.44
VPS13A-206ENST00000376646 TMEM262E9PQX1 116 aa-0.17□□□□□ -2.44
VPS13A-206ENST00000376646 DEFB112Q30KQ8 113 aa-0.17□□□□□ -2.44
VPS13A-206ENST00000376646 CCDC18Q5T9S5 1454 aa-0.17□□□□□ -2.44
VPS13A-206ENST00000376646 CLTCL1P53675 1640 aa-0.18□□□□□ -2.44
VPS13A-206ENST00000376646 CCDC88BA6NC98 1476 aa-0.18□□□□□ -2.44
VPS13A-206ENST00000376646 DEFB107AQ8IZN7 70 aa-0.18□□□□□ -2.44
VPS13A-206ENST00000376646 CGREF1Q99674 301 aa-0.18□□□□□ -2.44
VPS13A-206ENST00000376646 MROH2BQ7Z745 1585 aa-0.18□□□□□ -2.44
VPS13A-206ENST00000376646 MYH4Q9Y623 1939 aa-0.18□□□□□ -2.44
VPS13A-206ENST00000376646 PTPN23Q9H3S7 1636 aa-0.18□□□□□ -2.44
VPS13A-206ENST00000376646 A0A0G2JND7 137 aa-0.18□□□□□ -2.44
VPS13A-206ENST00000376646 CPSF4LA6NMK7 179 aaKnown RBP-0.18□□□□□ -2.44
VPS13A-206ENST00000376646 SYS1-DBNDD2H3BUS1 97 aa-0.18□□□□□ -2.44
VPS13A-206ENST00000376646 MT1BP07438 61 aa-0.18□□□□□ -2.44
VPS13A-206ENST00000376646 ABCC2Q92887 1545 aa-0.19□□□□□ -2.44
VPS13A-206ENST00000376646 MT-ATP8P03928 68 aa-0.19□□□□□ -2.44
VPS13A-206ENST00000376646 SUPT6HQ7KZ85 1726 aaKnown RBP-0.19□□□□□ -2.44
VPS13A-206ENST00000376646 ABCC3O15438 1527 aa-0.19□□□□□ -2.44
VPS13A-206ENST00000376646 RGPD2P0DJD1 1756 aa-0.19□□□□□ -2.44
VPS13A-206ENST00000376646 ATP10BO94823 1461 aa-0.19□□□□□ -2.44
VPS13A-206ENST00000376646 TIAM2Q8IVF5 1701 aa-0.19□□□□□ -2.44
VPS13A-206ENST00000376646 LYNX1G3V0Z9 82 aa-0.2□□□□□ -2.44
VPS13A-206ENST00000376646 GNGT2O14610 69 aa-0.2□□□□□ -2.44
VPS13A-206ENST00000376646 SPINK4O60575 86 aa-0.2□□□□□ -2.44
VPS13A-206ENST00000376646 MPC2O95563 127 aa-0.2□□□□□ -2.44
VPS13A-206ENST00000376646 C7orf77A4D0Y5 90 aa-0.2□□□□□ -2.44
VPS13A-206ENST00000376646 MT1HL1P0DM35 61 aa-0.2□□□□□ -2.44
VPS13A-206ENST00000376646 COX8AP10176 69 aa-0.2□□□□□ -2.44
VPS13A-206ENST00000376646 DEFB135Q30KP9 77 aa-0.2□□□□□ -2.44
VPS13A-206ENST00000376646 USMG5Q96IX5 58 aa-0.2□□□□□ -2.44
VPS13A-206ENST00000376646 VAMP8Q9BV40 100 aa-0.2□□□□□ -2.44
VPS13A-206ENST00000376646 PSENENQ9NZ42 101 aa-0.2□□□□□ -2.44
VPS13A-206ENST00000376646 CACFD1Q9UGQ2 172 aa-0.2□□□□□ -2.44
VPS13A-206ENST00000376646 MON2Q7Z3U7 1717 aa-0.2□□□□□ -2.44
VPS13A-206ENST00000376646 KIF1AQ12756 1690 aa-0.2□□□□□ -2.44
VPS13A-206ENST00000376646 A0A1B0GU69 56 aa-0.21□□□□□ -2.44
VPS13A-206ENST00000376646 ATP6V1G2-DDX39BF2Z307 99 aa-0.21□□□□□ -2.44
VPS13A-206ENST00000376646 H7BZZ5 65 aa-0.21□□□□□ -2.44
VPS13A-206ENST00000376646 NDUFA3O95167 84 aa-0.21□□□□□ -2.44
VPS13A-206ENST00000376646 S100PP25815 95 aa-0.21□□□□□ -2.44
VPS13A-206ENST00000376646 NCMAPQ5T1S8 102 aa-0.21□□□□□ -2.44
VPS13A-206ENST00000376646 HEPN1Q6WQI6 88 aa-0.21□□□□□ -2.44
VPS13A-206ENST00000376646 C6orf201Q7Z4U5 140 aa-0.21□□□□□ -2.44
VPS13A-206ENST00000376646 C9orf62Q8N4C0 152 aa-0.21□□□□□ -2.44
VPS13A-206ENST00000376646 HIGD1BQ9P298 99 aa-0.21□□□□□ -2.44
VPS13A-206ENST00000376646 HFM1A2PYH4 1435 aa-0.21□□□□□ -2.44
VPS13A-206ENST00000376646 TROQ12816 1431 aaPredicted RBP-0.21□□□□□ -2.44
VPS13A-206ENST00000376646 ABCA5Q8WWZ7 1642 aa-0.21□□□□□ -2.44
VPS13A-206ENST00000376646 TMEM218A2RU14 115 aa-0.21□□□□□ -2.44
VPS13A-206ENST00000376646 IGLC2P0DOY2 106 aa-0.21□□□□□ -2.44
VPS13A-206ENST00000376646 IGLC3P0DOY3 106 aa-0.21□□□□□ -2.44
VPS13A-206ENST00000376646 S100A10P60903 97 aa-0.21□□□□□ -2.44
VPS13A-206ENST00000376646 DEFA5Q01523 94 aa-0.21□□□□□ -2.44
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms