RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 DLEU1O43261 78 aa11.73□□□□□ -0.53
CCDC28B-201ENST00000373602 IGLV8-61A0A075B6I0 122 aa11.72□□□□□ -0.53
CCDC28B-201ENST00000373602 BVES-AS1Q5T3Y7 98 aa11.72□□□□□ -0.53
CCDC28B-201ENST00000373602 Q6JHZ5 121 aa11.72□□□□□ -0.53
CCDC28B-201ENST00000373602 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.71□□□□□ -0.53
CCDC28B-201ENST00000373602 OCIAD2Q56VL3 154 aa11.68□□□□□ -0.54
CCDC28B-201ENST00000373602 LCE2CQ5TA81 110 aa11.68□□□□□ -0.54
CCDC28B-201ENST00000373602 IGFL1Q6UW32 110 aa11.68□□□□□ -0.54
CCDC28B-201ENST00000373602 CLEC2BQ92478 149 aa11.68□□□□□ -0.54
CCDC28B-201ENST00000373602 PPDPFLQ8WWR9 84 aa11.67□□□□□ -0.54
CCDC28B-201ENST00000373602 KRTAP19-2Q3LHN2 52 aa11.66□□□□□ -0.54
CCDC28B-201ENST00000373602 TRBV7-7A0A0K0K1E9 115 aa11.65□□□□□ -0.54
CCDC28B-201ENST00000373602 CFC1BP0CG36 223 aa11.65□□□□□ -0.54
CCDC28B-201ENST00000373602 CFC1P0CG37 223 aa11.65□□□□□ -0.54
CCDC28B-201ENST00000373602 C14orf144Q96I85 54 aa11.65□□□□□ -0.54
CCDC28B-201ENST00000373602 HIGD1BQ9P298 99 aa11.65□□□□□ -0.54
CCDC28B-201ENST00000373602 RPL37P61927 97 aaKnown RBP11.64□□□□□ -0.55
CCDC28B-201ENST00000373602 SPATA45Q537H7 98 aa11.62□□□□□ -0.55
CCDC28B-201ENST00000373602 SNHG12Q9BXW3 62 aa11.62□□□□□ -0.55
CCDC28B-201ENST00000373602 PAM16Q9Y3D7 125 aa11.62□□□□□ -0.55
CCDC28B-201ENST00000373602 RAB37Q96AX2 223 aa11.61□□□□□ -0.55
CCDC28B-201ENST00000373602 A0A0B4J2C4 111 aa11.6□□□□□ -0.55
CCDC28B-201ENST00000373602 C2orf91Q6ZV80 131 aa11.59□□□□□ -0.55
CCDC28B-201ENST00000373602 H0YGX0 51 aa11.57□□□□□ -0.56
CCDC28B-201ENST00000373602 H3BUT2 72 aa11.57□□□□□ -0.56
CCDC28B-201ENST00000373602 VAMP8Q9BV40 100 aa11.57□□□□□ -0.56
CCDC28B-201ENST00000373602 SNCGO76070 127 aa11.55□□□□□ -0.56
CCDC28B-201ENST00000373602 FAM218AQ96MZ4 157 aa11.54□□□□□ -0.56
CCDC28B-201ENST00000373602 MT1HP80294 61 aa11.53□□□□□ -0.56
CCDC28B-201ENST00000373602 CEND1Q8N111 149 aa11.52□□□□□ -0.57
CCDC28B-201ENST00000373602 Q6Q795 121 aa11.5□□□□□ -0.57
CCDC28B-201ENST00000373602 LST1O00453 97 aa11.49□□□□□ -0.57
CCDC28B-201ENST00000373602 NDUFV3P56181 108 aaKnown RBP11.49□□□□□ -0.57
CCDC28B-201ENST00000373602 KRTAP9-6A0A140TA67 174 aa11.48□□□□□ -0.57
CCDC28B-201ENST00000373602 LCE2DQ5TA82 110 aaPredicted RBP11.48□□□□□ -0.57
CCDC28B-201ENST00000373602 PRO1854Q9UHT4 67 aa11.48□□□□□ -0.57
CCDC28B-201ENST00000373602 TMEM238LA0A1B0GVL6 79 aa11.47□□□□□ -0.57
CCDC28B-201ENST00000373602 A0A1B0GX51 115 aa11.47□□□□□ -0.57
CCDC28B-201ENST00000373602 A6NJY4 79 aa11.47□□□□□ -0.57
CCDC28B-201ENST00000373602 OBSCN-AS1Q96MR7 158 aa11.46□□□□□ -0.57
CCDC28B-201ENST00000373602 SS18L2Q9UHA2 77 aa11.46□□□□□ -0.57
CCDC28B-201ENST00000373602 FXYD2P54710 66 aa11.45□□□□□ -0.58
CCDC28B-201ENST00000373602 TEN1Q86WV5 123 aa11.45□□□□□ -0.58
CCDC28B-201ENST00000373602 GHRHP01286 108 aa11.43□□□□□ -0.58
CCDC28B-201ENST00000373602 Q75L30 129 aa11.43□□□□□ -0.58
CCDC28B-201ENST00000373602 H3BMG7 143 aa11.41□□□□□ -0.58
CCDC28B-201ENST00000373602 TRIAP1O43715 76 aa11.4□□□□□ -0.58
CCDC28B-201ENST00000373602 FABP2P12104 132 aa11.39□□□□□ -0.59
CCDC28B-201ENST00000373602 A0A087WSZ3 146 aa11.38□□□□□ -0.59
CCDC28B-201ENST00000373602 PYY3Q5JQD4 70 aa11.38□□□□□ -0.59
CCDC28B-201ENST00000373602 ATP11AUNQ6ZP68 121 aa11.38□□□□□ -0.59
CCDC28B-201ENST00000373602 COX6B2Q6YFQ2 88 aa11.36□□□□□ -0.59
CCDC28B-201ENST00000373602 HSD52Q0P140 79 aa11.35□□□□□ -0.59
CCDC28B-201ENST00000373602 Q96NJ1 140 aa11.35□□□□□ -0.59
CCDC28B-201ENST00000373602 A0A1W2PNM2 257 aa11.33□□□□□ -0.6
CCDC28B-201ENST00000373602 LORP23490 312 aaPredicted RBP11.33□□□□□ -0.6
CCDC28B-201ENST00000373602 KRTAP10-6P60371 365 aaPredicted RBP11.32□□□□□ -0.6
CCDC28B-201ENST00000373602 K7ERJ3 54 aa11.3□□□□□ -0.6
CCDC28B-201ENST00000373602 C20orf166-AS1Q96NR2 134 aa11.3□□□□□ -0.6
CCDC28B-201ENST00000373602 DNAL4O96015 105 aa11.29□□□□□ -0.6
CCDC28B-201ENST00000373602 ORMDL1Q9P0S3 153 aa11.29□□□□□ -0.6
CCDC28B-201ENST00000373602 A8MUU9 505 aa11.28□□□□□ -0.6
CCDC28B-201ENST00000373602 H3BQ85 93 aa11.28□□□□□ -0.6
CCDC28B-201ENST00000373602 M0R2T5 61 aa11.28□□□□□ -0.6
CCDC28B-201ENST00000373602 PSMB2P49721 201 aa11.28□□□□□ -0.6
CCDC28B-201ENST00000373602 COX6CP09669 75 aa11.26□□□□□ -0.61
CCDC28B-201ENST00000373602 ANKRD29Q8N6D5 301 aa11.26□□□□□ -0.61
CCDC28B-201ENST00000373602 FLGP20930 4061 aaPredicted RBP11.25□□□□□ -0.61
CCDC28B-201ENST00000373602 TRBV7-4A0A0J9YYF1 115 aa11.24□□□□□ -0.61
CCDC28B-201ENST00000373602 UQCR10Q9UDW1 63 aa11.24□□□□□ -0.61
CCDC28B-201ENST00000373602 TMEM256-PLSCR3K7ERE1 68 aa11.23□□□□□ -0.61
CCDC28B-201ENST00000373602 DSCR10P59022 87 aa11.22□□□□□ -0.61
CCDC28B-201ENST00000373602 SIGMAR1Q99720 223 aa11.22□□□□□ -0.61
CCDC28B-201ENST00000373602 A0A1B0GV72 72 aa11.21□□□□□ -0.61
CCDC28B-201ENST00000373602 CRCT1Q9UGL9 99 aa11.2□□□□□ -0.62
CCDC28B-201ENST00000373602 IGKV4-1P06312 121 aa11.17□□□□□ -0.62
CCDC28B-201ENST00000373602 UBE2V1Q13404 147 aa11.17□□□□□ -0.62
CCDC28B-201ENST00000373602 TMA7Q9Y2S6 64 aaKnown RBP11.17□□□□□ -0.62
CCDC28B-201ENST00000373602 TRACP01848 142 aa11.15□□□□□ -0.62
CCDC28B-201ENST00000373602 CCKP06307 115 aa11.15□□□□□ -0.62
CCDC28B-201ENST00000373602 LINC00313P59037 77 aa11.15□□□□□ -0.62
CCDC28B-201ENST00000373602 LINC00472Q9H8W2 130 aa11.14□□□□□ -0.63
CCDC28B-201ENST00000373602 KRTAP16-1A8MUX0 517 aa11.12□□□□□ -0.63
CCDC28B-201ENST00000373602 SCGB1C2P0DMR2 95 aa11.11□□□□□ -0.63
CCDC28B-201ENST00000373602 DEFB116Q30KQ4 102 aa11.1□□□□□ -0.63
CCDC28B-201ENST00000373602 NOTCH2NLQ7Z3S9 236 aa11.09□□□□□ -0.63
CCDC28B-201ENST00000373602 FSIP2Q5CZC0 6907 aa11.09□□□□□ -0.63
CCDC28B-201ENST00000373602 TRBV20-1A0A075B6N2 111 aa11.08□□□□□ -0.64
CCDC28B-201ENST00000373602 RBM3P98179 157 aaKnown RBP11.07□□□□□ -0.64
CCDC28B-201ENST00000373602 VPS25Q9BRG1 176 aa11.04□□□□□ -0.64
CCDC28B-201ENST00000373602 IGHV6-1A0A0B4J1U7 121 aa11.03□□□□□ -0.64
CCDC28B-201ENST00000373602 DSCR8Q96T75 97 aa11.03□□□□□ -0.64
CCDC28B-201ENST00000373602 BAALC-AS2P0C853 105 aa11.01□□□□□ -0.65
CCDC28B-201ENST00000373602 A0A1B0GVX0 72 aa10.97□□□□□ -0.65
CCDC28B-201ENST00000373602 C8orf87E5RJ46 101 aa10.97□□□□□ -0.65
CCDC28B-201ENST00000373602 C9JAW5 83 aa10.96□□□□□ -0.65
CCDC28B-201ENST00000373602 C21orf62-AS1Q17RA5 79 aa10.96□□□□□ -0.65
CCDC28B-201ENST00000373602 M0R143 59 aa10.94□□□□□ -0.66
CCDC28B-201ENST00000373602 J3KT08 172 aa10.92□□□□□ -0.66
CCDC28B-201ENST00000373602 HRES1P13985 223 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms