RNA–Protein interactions for RNA: ENST00000345851.7

TRIM3-201, Transcript of tripartite motif containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM3, Length 2,879 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-201ENST00000345851 LINC00208Q96KT6 92 aa13.67□□□□□ -0.22
TRIM3-201ENST00000345851 IGLV1-50A0A075B6I6 118 aa13.66□□□□□ -0.22
TRIM3-201ENST00000345851 STAB2Q8WWQ8 2551 aa13.65□□□□□ -0.22
TRIM3-201ENST00000345851 DEFB131BA0A096LNP1 70 aa13.65□□□□□ -0.22
TRIM3-201ENST00000345851 LINC00476Q8WZB0 136 aa13.65□□□□□ -0.22
TRIM3-201ENST00000345851 LYSTQ99698 3801 aa13.64□□□□□ -0.23
TRIM3-201ENST00000345851 MP68P56378 58 aa13.63□□□□□ -0.23
TRIM3-201ENST00000345851 NDUFB1O75438 58 aa13.62□□□□□ -0.23
TRIM3-201ENST00000345851 B9D2Q9BPU9 175 aa13.62□□□□□ -0.23
TRIM3-201ENST00000345851 RPL37AP61513 92 aaKnown RBP13.62□□□□□ -0.23
TRIM3-201ENST00000345851 SPRR1AP35321 89 aa13.61□□□□□ -0.23
TRIM3-201ENST00000345851 Q5VV11 94 aa13.61□□□□□ -0.23
TRIM3-201ENST00000345851 KRTAP7-1Q8IUC3 87 aa13.6□□□□□ -0.23
TRIM3-201ENST00000345851 A0A087WSZ3 146 aa13.58□□□□□ -0.24
TRIM3-201ENST00000345851 IGFL1Q6UW32 110 aa13.57□□□□□ -0.24
TRIM3-201ENST00000345851 CHKB-CPT1BH3BT56 60 aa13.56□□□□□ -0.24
TRIM3-201ENST00000345851 CASC10Q5T4H9 136 aa13.55□□□□□ -0.24
TRIM3-201ENST00000345851 MRPL55Q7Z7F7 128 aaKnown RBP13.54□□□□□ -0.24
TRIM3-201ENST00000345851 LINC01556Q5JQF7 62 aa13.54□□□□□ -0.24
TRIM3-201ENST00000345851 H0Y9P7 68 aa13.53□□□□□ -0.24
TRIM3-201ENST00000345851 PLA2G2DQ9UNK4 145 aa13.53□□□□□ -0.24
TRIM3-201ENST00000345851 PRR15LQ9BU68 103 aa13.52□□□□□ -0.25
TRIM3-201ENST00000345851 TENM2Q9NT68 2774 aa13.51□□□□□ -0.25
TRIM3-201ENST00000345851 TLX1NBP0CAT3 122 aa13.51□□□□□ -0.25
TRIM3-201ENST00000345851 Q8N9P0 234 aaPredicted RBP13.51□□□□□ -0.25
TRIM3-201ENST00000345851 H3BNG1 76 aa13.5□□□□□ -0.25
TRIM3-201ENST00000345851 DNAH9Q9NYC9 4486 aa13.5□□□□□ -0.25
TRIM3-201ENST00000345851 SPTSSBQ8NFR3 76 aa13.49□□□□□ -0.25
TRIM3-201ENST00000345851 IGLV5-37A0A075B6J1 123 aa13.48□□□□□ -0.25
TRIM3-201ENST00000345851 PRLHP81277 87 aa13.48□□□□□ -0.25
TRIM3-201ENST00000345851 REG3GQ6UW15 175 aa13.48□□□□□ -0.25
TRIM3-201ENST00000345851 C16orf90A8MZG2 172 aa13.46□□□□□ -0.25
TRIM3-201ENST00000345851 CASC2Q6XLA1 102 aa13.46□□□□□ -0.25
TRIM3-201ENST00000345851 UBE2AP49459 152 aa13.46□□□□□ -0.26
TRIM3-201ENST00000345851 KRTAP29-1A8MX34 341 aaPredicted RBP13.45□□□□□ -0.26
TRIM3-201ENST00000345851 DNHD1Q96M86 4753 aa13.44□□□□□ -0.26
TRIM3-201ENST00000345851 SRRM2Q9UQ35 2752 aaKnown RBP13.43□□□□□ -0.26
TRIM3-201ENST00000345851 LIMD2Q9BT23 127 aa13.42□□□□□ -0.26
TRIM3-201ENST00000345851 LINC00588Q9Y4M8 146 aa13.42□□□□□ -0.26
TRIM3-201ENST00000345851 CSMD3Q7Z407 3707 aa13.41□□□□□ -0.26
TRIM3-201ENST00000345851 SPANXA2-OT1Q8N9U9 137 aa13.41□□□□□ -0.26
TRIM3-201ENST00000345851 CD164Q04900 197 aa13.4□□□□□ -0.26
TRIM3-201ENST00000345851 CNBPP62633 177 aaKnown RBP13.39□□□□□ -0.27
TRIM3-201ENST00000345851 DNAH10Q8IVF4 4471 aa13.39□□□□□ -0.27
TRIM3-201ENST00000345851 DNAH7Q8WXX0 4024 aa13.37□□□□□ -0.27
TRIM3-201ENST00000345851 A6NED7 52 aa13.37□□□□□ -0.27
TRIM3-201ENST00000345851 DNAH10OSP0CZ25 163 aa13.36□□□□□ -0.27
TRIM3-201ENST00000345851 LCA10Q71F78 164 aa13.36□□□□□ -0.27
TRIM3-201ENST00000345851 IGKV2-24A0A0C4DH68 120 aa13.35□□□□□ -0.27
TRIM3-201ENST00000345851 PRKDCP78527 4128 aaKnown RBP13.35□□□□□ -0.27
TRIM3-201ENST00000345851 COA5Q86WW8 74 aa13.34□□□□□ -0.27
TRIM3-201ENST00000345851 C9orf163Q8N9P6 203 aa13.33□□□□□ -0.28
TRIM3-201ENST00000345851 H3BPC8 53 aa13.32□□□□□ -0.28
TRIM3-201ENST00000345851 A0A096LNI7 61 aa13.32□□□□□ -0.28
TRIM3-201ENST00000345851 KTN1-AS1Q86SY8 53 aa13.32□□□□□ -0.28
TRIM3-201ENST00000345851 PCOTHQ58A44 107 aa13.31□□□□□ -0.28
TRIM3-201ENST00000345851 DNAH1Q9P2D7 4330 aa13.3□□□□□ -0.28
TRIM3-201ENST00000345851 H0Y9J4 135 aa13.3□□□□□ -0.28
TRIM3-201ENST00000345851 IGLV8-61A0A075B6I0 122 aa13.29□□□□□ -0.28
TRIM3-201ENST00000345851 A8MWP4 228 aa13.29□□□□□ -0.28
TRIM3-201ENST00000345851 PLECQ15149 4684 aaKnown RBP13.28□□□□□ -0.28
TRIM3-201ENST00000345851 Q75L30 129 aa13.27□□□□□ -0.28
TRIM3-201ENST00000345851 RBM12B-AS1Q9P1G2 102 aa13.26□□□□□ -0.29
TRIM3-201ENST00000345851 LINC00472Q9H8W2 130 aa13.25□□□□□ -0.29
TRIM3-201ENST00000345851 ATP11AUNQ6ZP68 121 aa13.24□□□□□ -0.29
TRIM3-201ENST00000345851 SPAG11AQ6PDA7 123 aa13.23□□□□□ -0.29
TRIM3-201ENST00000345851 MEGF8Q7Z7M0 2845 aa13.23□□□□□ -0.29
TRIM3-201ENST00000345851 LOC101927531A0A1B0GV80 90 aa13.22□□□□□ -0.29
TRIM3-201ENST00000345851 IGLV7-46A0A075B6I9 117 aa13.21□□□□□ -0.3
TRIM3-201ENST00000345851 KRTAP1-5Q9BYS1 174 aa13.21□□□□□ -0.3
TRIM3-201ENST00000345851 MMP24-AS1A0A0U1RRL7 71 aa13.19□□□□□ -0.3
TRIM3-201ENST00000345851 STARD9Q9P2P6 4700 aa13.19□□□□□ -0.3
TRIM3-201ENST00000345851 KRTAP11-1Q8IUC1 163 aa13.18□□□□□ -0.3
TRIM3-201ENST00000345851 A6NN06 94 aa13.17□□□□□ -0.3
TRIM3-201ENST00000345851 UBE2DNLQ8IWF7 75 aa13.15□□□□□ -0.3
TRIM3-201ENST00000345851 CDC42SE1Q9NRR8 79 aa13.15□□□□□ -0.3
TRIM3-201ENST00000345851 PHF5AQ7RTV0 110 aaKnown RBP13.14□□□□□ -0.31
TRIM3-201ENST00000345851 CHTF8P0CG12 524 aa13.13□□□□□ -0.31
TRIM3-201ENST00000345851 APLNQ9ULZ1 77 aa13.11□□□□□ -0.31
TRIM3-201ENST00000345851 NDUFS5O43920 106 aa13.1□□□□□ -0.31
TRIM3-201ENST00000345851 TGP01266 2768 aa13.09□□□□□ -0.31
TRIM3-201ENST00000345851 MOBPQ13875 183 aa13.09□□□□□ -0.31
TRIM3-201ENST00000345851 SPINK7P58062 85 aa13.08□□□□□ -0.32
TRIM3-201ENST00000345851 LINC01558Q9Y6Z2 57 aa13.07□□□□□ -0.32
TRIM3-201ENST00000345851 DYNC2H1Q8NCM8 4307 aaKnown RBP13.07□□□□□ -0.32
TRIM3-201ENST00000345851 SPRR1BP22528 89 aa13.04□□□□□ -0.32
TRIM3-201ENST00000345851 KMT2AQ03164 3969 aa13.03□□□□□ -0.32
TRIM3-201ENST00000345851 HRES1P13985 223 aa13.02□□□□□ -0.33
TRIM3-201ENST00000345851 C7orf65Q6ZTY9 151 aa13.01□□□□□ -0.33
TRIM3-201ENST00000345851 IGLV9-49A0A0B4J1Y8 123 aa13□□□□□ -0.33
TRIM3-201ENST00000345851 PLAC8Q9NZF1 115 aa13□□□□□ -0.33
TRIM3-201ENST00000345851 IGHV6-1A0A0B4J1U7 121 aa12.98□□□□□ -0.33
TRIM3-201ENST00000345851 TP53AIP1Q9HCN2 124 aa12.98□□□□□ -0.33
TRIM3-201ENST00000345851 Q96NJ1 140 aa12.97□□□□□ -0.33
TRIM3-201ENST00000345851 C8orf17Q9NRJ1 99 aa12.97□□□□□ -0.33
TRIM3-201ENST00000345851 FBN3Q75N90 2809 aa12.96□□□□□ -0.33
TRIM3-201ENST00000345851 Q6ZR54 194 aa12.94□□□□□ -0.34
TRIM3-201ENST00000345851 ASB16-AS1Q495Z4 193 aa12.92□□□□□ -0.34
TRIM3-201ENST00000345851 NUPR2A6NF83 97 aa12.91□□□□□ -0.34
TRIM3-201ENST00000345851 PRR26Q8N8Z3 221 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms