RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 MT1BP07438 61 aa0.76□□□□□ -2.29
LINC00643-201ENST00000334389 SMIM13P0DJ93 91 aa0.76□□□□□ -2.29
LINC00643-201ENST00000334389 MRPL51Q4U2R6 128 aaKnown RBP0.76□□□□□ -2.29
LINC00643-201ENST00000334389 SUMO4Q6EEV6 95 aa0.76□□□□□ -2.29
LINC00643-201ENST00000334389 NTM-AS1Q6ZSK4 140 aa0.76□□□□□ -2.29
LINC00643-201ENST00000334389 SERP2Q8N6R1 65 aa0.76□□□□□ -2.29
LINC00643-201ENST00000334389 SPANXA2-OT1Q8N9U9 137 aa0.76□□□□□ -2.29
LINC00643-201ENST00000334389 RNASE7Q9H1E1 156 aaKnown RBP0.76□□□□□ -2.29
LINC00643-201ENST00000334389 ANAPC11Q9NYG5 84 aa0.76□□□□□ -2.29
LINC00643-201ENST00000334389 TRAPPC1Q9Y5R8 145 aa0.76□□□□□ -2.29
LINC00643-201ENST00000334389 TNCP24821 2201 aa0.75□□□□□ -2.29
LINC00643-201ENST00000334389 A0A087WWL8 130 aa0.75□□□□□ -2.29
LINC00643-201ENST00000334389 CCDC179H3BU77 68 aa0.75□□□□□ -2.29
LINC00643-201ENST00000334389 H7BZZ5 65 aa0.75□□□□□ -2.29
LINC00643-201ENST00000334389 ARMS2P0C7Q2 107 aa0.75□□□□□ -2.29
LINC00643-201ENST00000334389 MT3P25713 68 aa0.75□□□□□ -2.29
LINC00643-201ENST00000334389 PLNP26678 52 aa0.75□□□□□ -2.29
LINC00643-201ENST00000334389 SUMO2P61956 95 aaKnown RBP0.75□□□□□ -2.29
LINC00643-201ENST00000334389 ADIRFQ15847 76 aa0.75□□□□□ -2.29
LINC00643-201ENST00000334389 SPINK13Q1W4C9 94 aa0.75□□□□□ -2.29
LINC00643-201ENST00000334389 KRTAP13-2Q52LG2 175 aa0.75□□□□□ -2.29
LINC00643-201ENST00000334389 CENPWQ5EE01 88 aa0.75□□□□□ -2.29
LINC00643-201ENST00000334389 LINC00173Q6ZV60 143 aa0.75□□□□□ -2.29
LINC00643-201ENST00000334389 PRELID3AQ96N28 172 aa0.75□□□□□ -2.29
LINC00643-201ENST00000334389 CHCHD5Q9BSY4 110 aa0.75□□□□□ -2.29
LINC00643-201ENST00000334389 KCNQ1DNQ9H478 68 aa0.75□□□□□ -2.29
LINC00643-201ENST00000334389 SPCS1Q9Y6A9 102 aa0.75□□□□□ -2.29
LINC00643-201ENST00000334389 TRAV13-2A0A0B4J235 113 aa0.75□□□□□ -2.29
LINC00643-201ENST00000334389 LINC00959A0A1B0GUT2 108 aa0.75□□□□□ -2.29
LINC00643-201ENST00000334389 NDUFA1O15239 70 aa0.75□□□□□ -2.29
LINC00643-201ENST00000334389 PYYP10082 97 aa0.75□□□□□ -2.29
LINC00643-201ENST00000334389 FCER1GP30273 86 aa0.75□□□□□ -2.29
LINC00643-201ENST00000334389 KRTDAPP60985 99 aa0.75□□□□□ -2.29
LINC00643-201ENST00000334389 CXCL6P80162 114 aa0.75□□□□□ -2.29
LINC00643-201ENST00000334389 ORMDL3Q8N138 153 aa0.75□□□□□ -2.29
LINC00643-201ENST00000334389 NAA38Q9BRA0 125 aaKnown RBP0.75□□□□□ -2.29
LINC00643-201ENST00000334389 WFDC10AQ9H1F0 79 aa0.75□□□□□ -2.29
LINC00643-201ENST00000334389 JPT2Q9H910 190 aa0.75□□□□□ -2.29
LINC00643-201ENST00000334389 NOP10Q9NPE3 64 aaKnown RBP0.75□□□□□ -2.29
LINC00643-201ENST00000334389 IGLV5-48A0A075B6I7 105 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 TRAV12-3A0A0B4J271 114 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 TRGV4A0A0C4DH28 118 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 H3BPC8 53 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 SPINK8P0C7L1 97 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 LYZL1Q6UWQ5 148 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 EXOC3-AS1Q8N2X6 119 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 RNF182Q8N6D2 247 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 XCL2Q9UBD3 114 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 PHLDA3Q9Y5J5 127 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 TRAV7A0A075B6U4 112 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 TRGV1A0A0A0MS02 117 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 GNRH2O43555 120 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 IGHV3-48P01763 117 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 IGKCP01834 107 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 LGALS3P17931 250 aaKnown RBP0.74□□□□□ -2.29
LINC00643-201ENST00000334389 RPL35AP18077 110 aaKnown RBP0.74□□□□□ -2.29
LINC00643-201ENST00000334389 SPRR2EP22531 72 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 SPRR2BP35325 72 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 SPRR2AP35326 72 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 REG3AQ06141 175 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 WFDC10BQ8IUB3 73 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 C14orf178Q8N769 122 aaPredicted RBP0.74□□□□□ -2.29
LINC00643-201ENST00000334389 VPS25Q9BRG1 176 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 ANAPC13Q9BS18 74 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 C1orf43Q9BWL3 253 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 SLC25A22Q9H936 323 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 IGLV4-3A0A075B6K6 122 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 TRGV2A0A075B6R0 118 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 F8VRH5 84 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 M0R2Z0 102 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 M0R3E3 92 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 COX7A2LO14548 114 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 IGLV6-57P01721 117 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 FXYD2P54710 66 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 ADAMTSL4-AS1Q5T5F5 129 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 SOSTDC1Q6X4U4 206 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 KTN1-AS1Q86SY8 53 aa0.74□□□□□ -2.29
LINC00643-201ENST00000334389 hDV103S1A0JD37 113 aa0.73□□□□□ -2.29
LINC00643-201ENST00000334389 LEPROTO15243 131 aa0.73□□□□□ -2.29
LINC00643-201ENST00000334389 SCGB1D4Q6XE38 83 aa0.73□□□□□ -2.29
LINC00643-201ENST00000334389 Q6ZVQ6 151 aa0.73□□□□□ -2.29
LINC00643-201ENST00000334389 SMIM7Q9BQ49 75 aa0.73□□□□□ -2.29
LINC00643-201ENST00000334389 PRO2289Q9P1D8 64 aa0.73□□□□□ -2.29
LINC00643-201ENST00000334389 SS18L2Q9UHA2 77 aa0.73□□□□□ -2.29
LINC00643-201ENST00000334389 V9GYY9 64 aa0.73□□□□□ -2.29
LINC00643-201ENST00000334389 TRAV13-1A0A0B4J241 112 aa0.73□□□□□ -2.29
LINC00643-201ENST00000334389 A0A0U1RRA0 63 aa0.73□□□□□ -2.29
LINC00643-201ENST00000334389 M0R378 163 aa0.73□□□□□ -2.29
LINC00643-201ENST00000334389 PSCAO43653 123 aa0.73□□□□□ -2.29
LINC00643-201ENST00000334389 CRPP02741 224 aa0.73□□□□□ -2.29
LINC00643-201ENST00000334389 SYCNQ0VAF6 134 aa0.73□□□□□ -2.29
LINC00643-201ENST00000334389 WFDC2Q14508 124 aa0.73□□□□□ -2.29
LINC00643-201ENST00000334389 Q5VV11 94 aa0.73□□□□□ -2.29
LINC00643-201ENST00000334389 FAM213BQ8TBF2 198 aa0.73□□□□□ -2.29
LINC00643-201ENST00000334389 CHCHD10Q8WYQ3 142 aaPredicted RBP0.73□□□□□ -2.29
LINC00643-201ENST00000334389 XAGE1AQ9HD64 81 aa0.73□□□□□ -2.29
LINC00643-201ENST00000334389 MUC12Q9UKN1 5478 aa0.72□□□□□ -2.29
LINC00643-201ENST00000334389 SMIM1B2RUZ4 78 aa0.72□□□□□ -2.29
LINC00643-201ENST00000334389 F6UB75 175 aa0.72□□□□□ -2.29
LINC00643-201ENST00000334389 H3BVH4 76 aa0.72□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 315.1 ms