RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 TNP2Q05952 138 aa10.42□□□□□ -0.74
VPS54-201ENST00000272322 PRKDCP78527 4128 aaKnown RBP10.41□□□□□ -0.74
VPS54-201ENST00000272322 DSCR10P59022 87 aa10.4□□□□□ -0.74
VPS54-201ENST00000272322 MEGF8Q7Z7M0 2845 aa10.4□□□□□ -0.74
VPS54-201ENST00000272322 LRCOL1A6NCL2 159 aa10.39□□□□□ -0.75
VPS54-201ENST00000272322 IGLV9-49A0A0B4J1Y8 123 aa10.38□□□□□ -0.75
VPS54-201ENST00000272322 ANAPC11Q9NYG5 84 aa10.38□□□□□ -0.75
VPS54-201ENST00000272322 STARD9Q9P2P6 4700 aa10.38□□□□□ -0.75
VPS54-201ENST00000272322 KMT2AQ03164 3969 aa10.38□□□□□ -0.75
VPS54-201ENST00000272322 NBDYA0A0U1RRE5 68 aa10.38□□□□□ -0.75
VPS54-201ENST00000272322 DNHD1Q96M86 4753 aa10.37□□□□□ -0.75
VPS54-201ENST00000272322 KLKP1Q107X0 134 aa10.36□□□□□ -0.75
VPS54-201ENST00000272322 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.36□□□□□ -0.75
VPS54-201ENST00000272322 OCR1Q9BZK8 76 aa10.35□□□□□ -0.75
VPS54-201ENST00000272322 FBN3Q75N90 2809 aa10.35□□□□□ -0.75
VPS54-201ENST00000272322 CNBPP62633 177 aaKnown RBP10.35□□□□□ -0.75
VPS54-201ENST00000272322 LINC00474Q9P2X8 69 aa10.34□□□□□ -0.75
VPS54-201ENST00000272322 B9D2Q9BPU9 175 aa10.33□□□□□ -0.76
VPS54-201ENST00000272322 C9orf163Q8N9P6 203 aa10.32□□□□□ -0.76
VPS54-201ENST00000272322 SPRR4Q96PI1 79 aa10.31□□□□□ -0.76
VPS54-201ENST00000272322 FRAS1Q86XX4 4008 aa10.3□□□□□ -0.76
VPS54-201ENST00000272322 MPLKIPQ8TAP9 179 aa10.3□□□□□ -0.76
VPS54-201ENST00000272322 RPS28P62857 69 aaKnown RBP10.3□□□□□ -0.76
VPS54-201ENST00000272322 H0Y9J4 135 aa10.29□□□□□ -0.76
VPS54-201ENST00000272322 C14orf177Q52M58 125 aa10.29□□□□□ -0.76
VPS54-201ENST00000272322 HCG22E2RYF7 251 aa10.26□□□□□ -0.77
VPS54-201ENST00000272322 BCE1O60756 84 aa10.25□□□□□ -0.77
VPS54-201ENST00000272322 Q5XG85 94 aa10.24□□□□□ -0.77
VPS54-201ENST00000272322 A0A0U1RQV1 116 aa10.23□□□□□ -0.77
VPS54-201ENST00000272322 FAM229BQ4G0N7 80 aa10.23□□□□□ -0.77
VPS54-201ENST00000272322 NUPR2A6NF83 97 aa10.23□□□□□ -0.77
VPS54-201ENST00000272322 SERP1Q9Y6X1 66 aa10.22□□□□□ -0.77
VPS54-201ENST00000272322 LY6G6CO95867 125 aa10.21□□□□□ -0.77
VPS54-201ENST00000272322 Q6ZRN7 208 aaPredicted RBP10.21□□□□□ -0.77
VPS54-201ENST00000272322 LINC00208Q96KT6 92 aa10.2□□□□□ -0.78
VPS54-201ENST00000272322 A0A087WTM6 91 aa10.19□□□□□ -0.78
VPS54-201ENST00000272322 SVIPQ8NHG7 77 aa10.19□□□□□ -0.78
VPS54-201ENST00000272322 RTL8CO15255 209 aa10.18□□□□□ -0.78
VPS54-201ENST00000272322 FP248Q71RG6 208 aaPredicted RBP10.17□□□□□ -0.78
VPS54-201ENST00000272322 NDUFC1O43677 76 aa10.16□□□□□ -0.78
VPS54-201ENST00000272322 SPINK6Q6UWN8 80 aa10.16□□□□□ -0.78
VPS54-201ENST00000272322 CASC2Q6XLA1 102 aa10.16□□□□□ -0.78
VPS54-201ENST00000272322 MOBPQ13875 183 aa10.15□□□□□ -0.78
VPS54-201ENST00000272322 PSORS1C2Q9UIG4 136 aa10.15□□□□□ -0.78
VPS54-201ENST00000272322 VPS13DQ5THJ4 4388 aa10.15□□□□□ -0.79
VPS54-201ENST00000272322 DNAH2Q9P225 4427 aa10.14□□□□□ -0.79
VPS54-201ENST00000272322 NDUFS5O43920 106 aa10.12□□□□□ -0.79
VPS54-201ENST00000272322 SPACA4Q8TDM5 124 aa10.12□□□□□ -0.79
VPS54-201ENST00000272322 IGLV5-52A0A0A0MRZ9 124 aa10.11□□□□□ -0.79
VPS54-201ENST00000272322 A0A1B0GW54 56 aa10.11□□□□□ -0.79
VPS54-201ENST00000272322 IGHV6-1A0A0B4J1U7 121 aa10.09□□□□□ -0.79
VPS54-201ENST00000272322 PRR15Q8IV56 129 aa10.09□□□□□ -0.79
VPS54-201ENST00000272322 DNAH6Q9C0G6 4158 aa10.08□□□□□ -0.8
VPS54-201ENST00000272322 SMIM26A0A096LP01 95 aa10.08□□□□□ -0.8
VPS54-201ENST00000272322 MP68P56378 58 aa10.08□□□□□ -0.8
VPS54-201ENST00000272322 C5orf47Q569G3 176 aa10.08□□□□□ -0.8
VPS54-201ENST00000272322 HECTD4Q9Y4D8 3996 aa10.08□□□□□ -0.8
VPS54-201ENST00000272322 IGLV8-61A0A075B6I0 122 aa10.07□□□□□ -0.8
VPS54-201ENST00000272322 LINC00336Q6ZUF6 198 aa10.07□□□□□ -0.8
VPS54-201ENST00000272322 LINC00472Q9H8W2 130 aa10.07□□□□□ -0.8
VPS54-201ENST00000272322 H0Y9P7 68 aa10.06□□□□□ -0.8
VPS54-201ENST00000272322 DNAH17Q9UFH2 4485 aa10.05□□□□□ -0.8
VPS54-201ENST00000272322 PCOTHQ58A44 107 aa10.05□□□□□ -0.8
VPS54-201ENST00000272322 C1orf64Q8NEQ6 169 aa10.05□□□□□ -0.8
VPS54-201ENST00000272322 CIRBP-AS1Q8TBR5 109 aa10.05□□□□□ -0.8
VPS54-201ENST00000272322 DNAH8Q96JB1 4490 aa10.05□□□□□ -0.8
VPS54-201ENST00000272322 A8MWP4 228 aa10.05□□□□□ -0.8
VPS54-201ENST00000272322 C1orf134Q5TEV5 83 aa10.04□□□□□ -0.8
VPS54-201ENST00000272322 DNAH11Q96DT5 4516 aa10.04□□□□□ -0.8
VPS54-201ENST00000272322 KRTAP13-1Q8IUC0 172 aa10.03□□□□□ -0.8
VPS54-201ENST00000272322 NDUFB1O75438 58 aa10.03□□□□□ -0.8
VPS54-201ENST00000272322 SPRR1BP22528 89 aa10.02□□□□□ -0.81
VPS54-201ENST00000272322 DYNC2H1Q8NCM8 4307 aaKnown RBP10.02□□□□□ -0.81
VPS54-201ENST00000272322 BRK1Q8WUW1 75 aa10.01□□□□□ -0.81
VPS54-201ENST00000272322 PSPHP1O15172 72 aa10.01□□□□□ -0.81
VPS54-201ENST00000272322 A0A087X002 238 aa10□□□□□ -0.81
VPS54-201ENST00000272322 NOTCH2NLQ7Z3S9 236 aa10□□□□□ -0.81
VPS54-201ENST00000272322 hDV103S1A0JD37 113 aa10□□□□□ -0.81
VPS54-201ENST00000272322 KRTAP29-1A8MX34 341 aaPredicted RBP9.99□□□□□ -0.81
VPS54-201ENST00000272322 KRTAP10-2P60368 255 aa9.99□□□□□ -0.81
VPS54-201ENST00000272322 CDK2AP2O75956 126 aa9.98□□□□□ -0.81
VPS54-201ENST00000272322 ZCCHC13Q8WW36 166 aaKnown RBP9.97□□□□□ -0.81
VPS54-201ENST00000272322 ZNF861PO60384 105 aa9.97□□□□□ -0.81
VPS54-201ENST00000272322 ATP5EP56381 51 aaPredicted RBP9.97□□□□□ -0.81
VPS54-201ENST00000272322 WWC2-AS2Q96NR7 200 aa9.97□□□□□ -0.81
VPS54-201ENST00000272322 MMP24-AS1A0A0U1RRL7 71 aa9.95□□□□□ -0.82
VPS54-201ENST00000272322 Q6ZR54 194 aa9.95□□□□□ -0.82
VPS54-201ENST00000272322 RETNLBQ9BQ08 111 aa9.95□□□□□ -0.82
VPS54-201ENST00000272322 TRAV22A0A0B4J277 110 aa9.94□□□□□ -0.82
VPS54-201ENST00000272322 PKIGQ9Y2B9 76 aa9.93□□□□□ -0.82
VPS54-201ENST00000272322 LCE6AA0A183 80 aa9.93□□□□□ -0.82
VPS54-201ENST00000272322 Q96NJ1 140 aa9.92□□□□□ -0.82
VPS54-201ENST00000272322 HYDINQ4G0P3 5121 aa9.91□□□□□ -0.82
VPS54-201ENST00000272322 C8orf17Q9NRJ1 99 aa9.89□□□□□ -0.83
VPS54-201ENST00000272322 PLAC8Q9NZF1 115 aa9.89□□□□□ -0.83
VPS54-201ENST00000272322 LRP1BQ9NZR2 4599 aa9.87□□□□□ -0.83
VPS54-201ENST00000272322 IGLV7-43P04211 117 aa9.87□□□□□ -0.83
VPS54-201ENST00000272322 ZNF706Q9Y5V0 76 aaPredicted RBP9.87□□□□□ -0.83
VPS54-201ENST00000272322 A0A1B0GVX0 72 aa9.83□□□□□ -0.84
VPS54-201ENST00000272322 LINC00483Q53H64 154 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms