RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 IGLV5-48A0A075B6I7 105 aa6.43□□□□□ -1.38
LIG3-201ENST00000262327 KRTAP4-16G5E9R7 235 aaPredicted RBP6.42□□□□□ -1.38
LIG3-201ENST00000262327 KTN1-AS1Q86SY8 53 aa6.42□□□□□ -1.38
LIG3-201ENST00000262327 C1orf64Q8NEQ6 169 aa6.42□□□□□ -1.38
LIG3-201ENST00000262327 DHRS4-AS1Q9P1J3 65 aa6.41□□□□□ -1.38
LIG3-201ENST00000262327 PRLHP81277 87 aa6.41□□□□□ -1.38
LIG3-201ENST00000262327 A8MUN3 132 aa6.4□□□□□ -1.38
LIG3-201ENST00000262327 K7EQZ3 153 aa6.4□□□□□ -1.38
LIG3-201ENST00000262327 DNAH1Q9P2D7 4330 aa6.39□□□□□ -1.39
LIG3-201ENST00000262327 Q8NBF4 154 aa6.39□□□□□ -1.39
LIG3-201ENST00000262327 TNP2Q05952 138 aa6.39□□□□□ -1.39
LIG3-201ENST00000262327 TLX1NBP0CAT3 122 aa6.38□□□□□ -1.39
LIG3-201ENST00000262327 DSCR10P59022 87 aa6.38□□□□□ -1.39
LIG3-201ENST00000262327 HUWE1Q7Z6Z7 4374 aaKnown RBP6.38□□□□□ -1.39
LIG3-201ENST00000262327 SPRR1AP35321 89 aa6.38□□□□□ -1.39
LIG3-201ENST00000262327 PRR4Q16378 134 aa6.38□□□□□ -1.39
LIG3-201ENST00000262327 COL7A1Q02388 2944 aa6.37□□□□□ -1.39
LIG3-201ENST00000262327 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.37□□□□□ -1.39
LIG3-201ENST00000262327 REG3GQ6UW15 175 aa6.37□□□□□ -1.39
LIG3-201ENST00000262327 LINC00476Q8WZB0 136 aa6.37□□□□□ -1.39
LIG3-201ENST00000262327 SPTSSBQ8NFR3 76 aa6.36□□□□□ -1.39
LIG3-201ENST00000262327 A0A096LNI7 61 aa6.36□□□□□ -1.39
LIG3-201ENST00000262327 WFDC13Q8IUB5 93 aa6.35□□□□□ -1.39
LIG3-201ENST00000262327 PLA2G2DQ9UNK4 145 aa6.35□□□□□ -1.39
LIG3-201ENST00000262327 RPL37AP61513 92 aaKnown RBP6.35□□□□□ -1.39
LIG3-201ENST00000262327 KRTAP1-5Q9BYS1 174 aa6.35□□□□□ -1.39
LIG3-201ENST00000262327 CHTF8P0CG12 524 aa6.34□□□□□ -1.39
LIG3-201ENST00000262327 DNAH9Q9NYC9 4486 aa6.34□□□□□ -1.39
LIG3-201ENST00000262327 IGLV5-37A0A075B6J1 123 aa6.34□□□□□ -1.39
LIG3-201ENST00000262327 C16orf90A8MZG2 172 aa6.34□□□□□ -1.39
LIG3-201ENST00000262327 Q5VV11 94 aa6.34□□□□□ -1.39
LIG3-201ENST00000262327 A0A087WSZ3 146 aa6.34□□□□□ -1.4
LIG3-201ENST00000262327 IGFL1Q6UW32 110 aa6.34□□□□□ -1.4
LIG3-201ENST00000262327 PSCAO43653 123 aa6.33□□□□□ -1.4
LIG3-201ENST00000262327 SPRR4Q96PI1 79 aa6.33□□□□□ -1.4
LIG3-201ENST00000262327 DNHD1Q96M86 4753 aa6.33□□□□□ -1.4
LIG3-201ENST00000262327 NUPR2A6NF83 97 aa6.32□□□□□ -1.4
LIG3-201ENST00000262327 KRTAP11-1Q8IUC1 163 aa6.32□□□□□ -1.4
LIG3-201ENST00000262327 CHKB-CPT1BH3BT56 60 aa6.31□□□□□ -1.4
LIG3-201ENST00000262327 APLNQ9ULZ1 77 aa6.31□□□□□ -1.4
LIG3-201ENST00000262327 PHF5AQ7RTV0 110 aaKnown RBP6.31□□□□□ -1.4
LIG3-201ENST00000262327 NDUFS5O43920 106 aa6.3□□□□□ -1.4
LIG3-201ENST00000262327 UBE2AP49459 152 aa6.3□□□□□ -1.4
LIG3-201ENST00000262327 DNAH7Q8WXX0 4024 aa6.3□□□□□ -1.4
LIG3-201ENST00000262327 HCG22E2RYF7 251 aa6.29□□□□□ -1.4
LIG3-201ENST00000262327 H3BS24 57 aa6.29□□□□□ -1.4
LIG3-201ENST00000262327 C8orf87E5RJ46 101 aa6.29□□□□□ -1.4
LIG3-201ENST00000262327 A6NN06 94 aa6.27□□□□□ -1.41
LIG3-201ENST00000262327 LCA10Q71F78 164 aa6.27□□□□□ -1.41
LIG3-201ENST00000262327 UBE2DNLQ8IWF7 75 aa6.27□□□□□ -1.41
LIG3-201ENST00000262327 ATP11AUNQ6ZP68 121 aa6.26□□□□□ -1.41
LIG3-201ENST00000262327 ZCCHC13Q8WW36 166 aaKnown RBP6.26□□□□□ -1.41
LIG3-201ENST00000262327 CYP4F30PQ9H0H9 118 aa6.26□□□□□ -1.41
LIG3-201ENST00000262327 LCE6AA0A183 80 aa6.25□□□□□ -1.41
LIG3-201ENST00000262327 A0A1B0GW54 56 aa6.25□□□□□ -1.41
LIG3-201ENST00000262327 PRR15LQ9BU68 103 aa6.24□□□□□ -1.41
LIG3-201ENST00000262327 MEGF8Q7Z7M0 2845 aa6.24□□□□□ -1.41
LIG3-201ENST00000262327 LINC00208Q96KT6 92 aa6.24□□□□□ -1.41
LIG3-201ENST00000262327 PANO1I0J062 215 aa6.22□□□□□ -1.41
LIG3-201ENST00000262327 C7orf65Q6ZTY9 151 aa6.22□□□□□ -1.41
LIG3-201ENST00000262327 Q8N9P0 234 aaPredicted RBP6.22□□□□□ -1.41
LIG3-201ENST00000262327 A6NED7 52 aa6.22□□□□□ -1.41
LIG3-201ENST00000262327 DYNC2H1Q8NCM8 4307 aaKnown RBP6.21□□□□□ -1.42
LIG3-201ENST00000262327 PRKDCP78527 4128 aaKnown RBP6.21□□□□□ -1.42
LIG3-201ENST00000262327 WWC2-AS2Q96NR7 200 aa6.2□□□□□ -1.42
LIG3-201ENST00000262327 LIMD2Q9BT23 127 aa6.2□□□□□ -1.42
LIG3-201ENST00000262327 PLECQ15149 4684 aaKnown RBP6.2□□□□□ -1.42
LIG3-201ENST00000262327 CNBPP62633 177 aaKnown RBP6.2□□□□□ -1.42
LIG3-201ENST00000262327 H0Y9J4 135 aa6.19□□□□□ -1.42
LIG3-201ENST00000262327 CASC2Q6XLA1 102 aa6.19□□□□□ -1.42
LIG3-201ENST00000262327 MP68P56378 58 aa6.19□□□□□ -1.42
LIG3-201ENST00000262327 IGLV9-49A0A0B4J1Y8 123 aa6.18□□□□□ -1.42
LIG3-201ENST00000262327 IGLV8-61A0A075B6I0 122 aa6.17□□□□□ -1.42
LIG3-201ENST00000262327 H0Y9P7 68 aa6.17□□□□□ -1.42
LIG3-201ENST00000262327 NBDYA0A0U1RRE5 68 aa6.17□□□□□ -1.42
LIG3-201ENST00000262327 KRTAP29-1A8MX34 341 aaPredicted RBP6.17□□□□□ -1.42
LIG3-201ENST00000262327 Q75L30 129 aa6.16□□□□□ -1.42
LIG3-201ENST00000262327 FRAS1Q86XX4 4008 aa6.16□□□□□ -1.42
LIG3-201ENST00000262327 MOBPQ13875 183 aa6.15□□□□□ -1.42
LIG3-201ENST00000262327 LINC00472Q9H8W2 130 aa6.15□□□□□ -1.43
LIG3-201ENST00000262327 FBN3Q75N90 2809 aa6.15□□□□□ -1.43
LIG3-201ENST00000262327 CDC42SE1Q9NRR8 79 aa6.14□□□□□ -1.43
LIG3-201ENST00000262327 ANAPC11Q9NYG5 84 aa6.14□□□□□ -1.43
LIG3-201ENST00000262327 NDUFB1O75438 58 aa6.14□□□□□ -1.43
LIG3-201ENST00000262327 A8MWP4 228 aa6.14□□□□□ -1.43
LIG3-201ENST00000262327 C9orf163Q8N9P6 203 aa6.14□□□□□ -1.43
LIG3-201ENST00000262327 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.13□□□□□ -1.43
LIG3-201ENST00000262327 PCOTHQ58A44 107 aa6.12□□□□□ -1.43
LIG3-201ENST00000262327 C14orf177Q52M58 125 aa6.11□□□□□ -1.43
LIG3-201ENST00000262327 LOC101927531A0A1B0GV80 90 aa6.11□□□□□ -1.43
LIG3-201ENST00000262327 PRAC1Q96KF2 57 aa6.11□□□□□ -1.43
LIG3-201ENST00000262327 SPRR1BP22528 89 aa6.1□□□□□ -1.43
LIG3-201ENST00000262327 Q6ZR54 194 aa6.1□□□□□ -1.43
LIG3-201ENST00000262327 MMP24-AS1A0A0U1RRL7 71 aa6.1□□□□□ -1.43
LIG3-201ENST00000262327 Q6ZRN7 208 aaPredicted RBP6.09□□□□□ -1.43
LIG3-201ENST00000262327 PRR26Q8N8Z3 221 aa6.09□□□□□ -1.43
LIG3-201ENST00000262327 TGP01266 2768 aa6.09□□□□□ -1.43
LIG3-201ENST00000262327 STARD9Q9P2P6 4700 aa6.09□□□□□ -1.43
LIG3-201ENST00000262327 LINC00313P59037 77 aa6.08□□□□□ -1.44
LIG3-201ENST00000262327 KMT2AQ03164 3969 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms