RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 A0A0A0MQY5 61 aa3.07□□□□□ -1.92
SCN1A-220ENST00000641603 PRO3102Q9H379 93 aa3.07□□□□□ -1.92
SCN1A-220ENST00000641603 LCE6AA0A183 80 aa3.07□□□□□ -1.92
SCN1A-220ENST00000641603 ABCA12Q86UK0 2595 aa3.07□□□□□ -1.92
SCN1A-220ENST00000641603 CHTF8P0CG12 524 aa3.06□□□□□ -1.92
SCN1A-220ENST00000641603 DSCR10P59022 87 aa3.06□□□□□ -1.92
SCN1A-220ENST00000641603 ZNF575Q86XF7 245 aa3.06□□□□□ -1.92
SCN1A-220ENST00000641603 C18orf65Q6ZTR6 163 aa3.06□□□□□ -1.92
SCN1A-220ENST00000641603 C9orf129Q5T035 196 aaKnown RBP3.06□□□□□ -1.92
SCN1A-220ENST00000641603 TLN2Q9Y4G6 2542 aa3.06□□□□□ -1.92
SCN1A-220ENST00000641603 PLA2G1BP04054 148 aaKnown RBP3.05□□□□□ -1.92
SCN1A-220ENST00000641603 FLG2Q5D862 2391 aaPredicted RBP3.05□□□□□ -1.92
SCN1A-220ENST00000641603 A6NN06 94 aa3.05□□□□□ -1.92
SCN1A-220ENST00000641603 CYSTM1Q9H1C7 97 aa3.05□□□□□ -1.92
SCN1A-220ENST00000641603 TNP2Q05952 138 aa3.05□□□□□ -1.92
SCN1A-220ENST00000641603 ZCCHC13Q8WW36 166 aaKnown RBP3.05□□□□□ -1.92
SCN1A-220ENST00000641603 LUZP6Q538Z0 58 aa3.05□□□□□ -1.92
SCN1A-220ENST00000641603 CSNK1G2-AS1Q8NCQ2 148 aa3.04□□□□□ -1.92
SCN1A-220ENST00000641603 FAM229BQ4G0N7 80 aa3.04□□□□□ -1.92
SCN1A-220ENST00000641603 C1orf134Q5TEV5 83 aa3.03□□□□□ -1.92
SCN1A-220ENST00000641603 SPRR1BP22528 89 aa3.03□□□□□ -1.92
SCN1A-220ENST00000641603 ZNF462Q96JM2 2506 aa3.03□□□□□ -1.92
SCN1A-220ENST00000641603 A0A096LNT2 108 aa3.03□□□□□ -1.92
SCN1A-220ENST00000641603 FASNP49327 2511 aaKnown RBP3.03□□□□□ -1.93
SCN1A-220ENST00000641603 ACANP16112 2415 aa3.02□□□□□ -1.93
SCN1A-220ENST00000641603 LY6G6CO95867 125 aa3.01□□□□□ -1.93
SCN1A-220ENST00000641603 CNBPP62633 177 aaKnown RBP3.01□□□□□ -1.93
SCN1A-220ENST00000641603 SPATA8Q6RVD6 105 aa3.01□□□□□ -1.93
SCN1A-220ENST00000641603 C9orf163Q8N9P6 203 aa3.01□□□□□ -1.93
SCN1A-220ENST00000641603 SPRR1AP35321 89 aa3.01□□□□□ -1.93
SCN1A-220ENST00000641603 HRES1P13985 223 aa3□□□□□ -1.93
SCN1A-220ENST00000641603 COL27A1Q8IZC6 1860 aaPredicted RBP3□□□□□ -1.93
SCN1A-220ENST00000641603 MMP24-AS1A0A0U1RRL7 71 aa3□□□□□ -1.93
SCN1A-220ENST00000641603 IGLV5-52A0A0A0MRZ9 124 aa2.99□□□□□ -1.93
SCN1A-220ENST00000641603 M0R2N4 97 aa2.99□□□□□ -1.93
SCN1A-220ENST00000641603 A0A1B0GU33 70 aa2.99□□□□□ -1.93
SCN1A-220ENST00000641603 Q6ZR54 194 aa2.98□□□□□ -1.93
SCN1A-220ENST00000641603 CHD8Q9HCK8 2581 aa2.98□□□□□ -1.93
SCN1A-220ENST00000641603 ZNF861PO60384 105 aa2.98□□□□□ -1.93
SCN1A-220ENST00000641603 PIEZO2Q9H5I5 2752 aa2.98□□□□□ -1.93
SCN1A-220ENST00000641603 LINC00472Q9H8W2 130 aa2.98□□□□□ -1.93
SCN1A-220ENST00000641603 PRR26Q8N8Z3 221 aa2.98□□□□□ -1.93
SCN1A-220ENST00000641603 KRTAP16-1A8MUX0 517 aa2.97□□□□□ -1.93
SCN1A-220ENST00000641603 CSAG1Q6PB30 78 aa2.97□□□□□ -1.93
SCN1A-220ENST00000641603 A0A1W2PPR1 153 aa2.97□□□□□ -1.93
SCN1A-220ENST00000641603 NOTCH2NLQ7Z3S9 236 aa2.97□□□□□ -1.93
SCN1A-220ENST00000641603 SPINK7P58062 85 aa2.96□□□□□ -1.94
SCN1A-220ENST00000641603 COX6B2Q6YFQ2 88 aa2.96□□□□□ -1.94
SCN1A-220ENST00000641603 KRTAP29-1A8MX34 341 aaPredicted RBP2.96□□□□□ -1.94
SCN1A-220ENST00000641603 IGLV7-43P04211 117 aa2.96□□□□□ -1.94
SCN1A-220ENST00000641603 INAFM1C9JVW0 142 aa2.96□□□□□ -1.94
SCN1A-220ENST00000641603 PRAC1Q96KF2 57 aa2.96□□□□□ -1.94
SCN1A-220ENST00000641603 JMJD1CQ15652 2540 aa2.96□□□□□ -1.94
SCN1A-220ENST00000641603 GIG44P09565 113 aaPredicted RBP2.95□□□□□ -1.94
SCN1A-220ENST00000641603 C19orf73Q9NVV2 129 aa2.95□□□□□ -1.94
SCN1A-220ENST00000641603 USP9YO00507 2555 aaPredicted RBP2.95□□□□□ -1.94
SCN1A-220ENST00000641603 SPACA4Q8TDM5 124 aa2.95□□□□□ -1.94
SCN1A-220ENST00000641603 Q96NJ1 140 aa2.94□□□□□ -1.94
SCN1A-220ENST00000641603 CEP295Q9C0D2 2601 aa2.94□□□□□ -1.94
SCN1A-220ENST00000641603 ROMO1P60602 79 aa2.94□□□□□ -1.94
SCN1A-220ENST00000641603 NBDYA0A0U1RRE5 68 aa2.94□□□□□ -1.94
SCN1A-220ENST00000641603 IGF2RP11717 2491 aa2.94□□□□□ -1.94
SCN1A-220ENST00000641603 LINC00483Q53H64 154 aa2.93□□□□□ -1.94
SCN1A-220ENST00000641603 CAMK2N1Q7Z7J9 78 aa2.93□□□□□ -1.94
SCN1A-220ENST00000641603 KRTAP25-1Q3LHN0 102 aa2.92□□□□□ -1.94
SCN1A-220ENST00000641603 FAM168BA1KXE4 195 aa2.92□□□□□ -1.94
SCN1A-220ENST00000641603 TYMSOSQ8TAI1 123 aa2.92□□□□□ -1.94
SCN1A-220ENST00000641603 POLQO75417 2590 aa2.92□□□□□ -1.94
SCN1A-220ENST00000641603 APLNQ9ULZ1 77 aa2.92□□□□□ -1.94
SCN1A-220ENST00000641603 RTL8CO15255 209 aa2.91□□□□□ -1.94
SCN1A-220ENST00000641603 SEC61BP60468 96 aaKnown RBP2.91□□□□□ -1.94
SCN1A-220ENST00000641603 SETD2Q9BYW2 2564 aaPredicted RBP2.9□□□□□ -1.94
SCN1A-220ENST00000641603 RPL37P61927 97 aaKnown RBP2.9□□□□□ -1.95
SCN1A-220ENST00000641603 PRRC2CQ9Y520 2896 aaKnown RBP2.9□□□□□ -1.95
SCN1A-220ENST00000641603 Q5W150 140 aa2.89□□□□□ -1.95
SCN1A-220ENST00000641603 ANAPC11Q9NYG5 84 aa2.89□□□□□ -1.95
SCN1A-220ENST00000641603 LINC00304Q8N9R0 145 aa2.88□□□□□ -1.95
SCN1A-220ENST00000641603 USP24Q9UPU5 2620 aa2.88□□□□□ -1.95
SCN1A-220ENST00000641603 KRTAP4-16G5E9R7 235 aaPredicted RBP2.88□□□□□ -1.95
SCN1A-220ENST00000641603 H1FX-AS1Q4G0G2 97 aa2.86□□□□□ -1.95
SCN1A-220ENST00000641603 KRTAP26-1Q6PEX3 210 aa2.86□□□□□ -1.95
SCN1A-220ENST00000641603 Q8NDZ9 215 aa2.86□□□□□ -1.95
SCN1A-220ENST00000641603 EPG5Q9HCE0 2579 aa2.86□□□□□ -1.95
SCN1A-220ENST00000641603 HELZ2Q9BYK8 2649 aaKnown RBP2.85□□□□□ -1.95
SCN1A-220ENST00000641603 A0A1W2PNN7 141 aa2.85□□□□□ -1.95
SCN1A-220ENST00000641603 BPTFQ12830 3046 aa2.85□□□□□ -1.95
SCN1A-220ENST00000641603 Q8N1X5 172 aa2.84□□□□□ -1.95
SCN1A-220ENST00000641603 PSORS1C2Q9UIG4 136 aa2.84□□□□□ -1.96
SCN1A-220ENST00000641603 PLAC8Q9NZF1 115 aa2.83□□□□□ -1.96
SCN1A-220ENST00000641603 A0A087WTM6 91 aa2.83□□□□□ -1.96
SCN1A-220ENST00000641603 CFAP46Q8IYW2 2715 aa2.82□□□□□ -1.96
SCN1A-220ENST00000641603 CR1P17927 2039 aa2.82□□□□□ -1.96
SCN1A-220ENST00000641603 PANO1I0J062 215 aa2.82□□□□□ -1.96
SCN1A-220ENST00000641603 RPS29P62273 56 aaKnown RBP2.81□□□□□ -1.96
SCN1A-220ENST00000641603 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP2.81□□□□□ -1.96
SCN1A-220ENST00000641603 A0A0D9SG42 100 aa2.8□□□□□ -1.96
SCN1A-220ENST00000641603 A0A0G2JQZ4 141 aa2.8□□□□□ -1.96
SCN1A-220ENST00000641603 WWC2-AS2Q96NR7 200 aa2.8□□□□□ -1.96
SCN1A-220ENST00000641603 KRTAP10-9P60411 292 aa2.79□□□□□ -1.96
SCN1A-220ENST00000641603 ATRQ13535 2644 aa2.79□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms