RNA–Protein interactions for RNA: ENST00000640653.1

VEGFA-232, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,170 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-232ENST00000640653 ERC2-IT1O76042 136 aa14.46□□□□□ -0.09
VEGFA-232ENST00000640653 JOSD1Q15040 202 aaPredicted RBP14.46□□□□□ -0.09
VEGFA-232ENST00000640653 Q9BRP9 147 aa14.46□□□□□ -0.09
VEGFA-232ENST00000640653 TPRXLQ17RH7 258 aa14.45□□□□□ -0.1
VEGFA-232ENST00000640653 CBY1Q9Y3M2 126 aa14.45□□□□□ -0.1
VEGFA-232ENST00000640653 TIMM17BO60830 172 aa14.44□□□□□ -0.1
VEGFA-232ENST00000640653 ZNF73O43830 326 aaPredicted RBP14.43□□□□□ -0.1
VEGFA-232ENST00000640653 C3orf79P0CE67 100 aa14.43□□□□□ -0.1
VEGFA-232ENST00000640653 ZNF815PA8K554 130 aa14.42□□□□□ -0.1
VEGFA-232ENST00000640653 COA6Q5JTJ3 125 aaKnown RBP14.42□□□□□ -0.1
VEGFA-232ENST00000640653 LINC00308Q8TCZ7 52 aa14.42□□□□□ -0.1
VEGFA-232ENST00000640653 LITAFQ99732 161 aa14.42□□□□□ -0.1
VEGFA-232ENST00000640653 CDIP1Q9H305 208 aa14.42□□□□□ -0.1
VEGFA-232ENST00000640653 SPANXCQ9NY87 97 aa14.42□□□□□ -0.1
VEGFA-232ENST00000640653 SPINK1P00995 79 aa14.4□□□□□ -0.1
VEGFA-232ENST00000640653 HINT1P49773 126 aaPredicted RBP14.4□□□□□ -0.1
VEGFA-232ENST00000640653 IGLV9-49A0A0B4J1Y8 123 aa14.39□□□□□ -0.11
VEGFA-232ENST00000640653 KRTDAPP60985 99 aa14.39□□□□□ -0.11
VEGFA-232ENST00000640653 MOBPQ13875 183 aa14.38□□□□□ -0.11
VEGFA-232ENST00000640653 FP248Q71RG6 208 aaPredicted RBP14.38□□□□□ -0.11
VEGFA-232ENST00000640653 SSBP3-AS1Q7Z2R9 100 aa14.37□□□□□ -0.11
VEGFA-232ENST00000640653 OR13C6PQ8NH95 151 aa14.37□□□□□ -0.11
VEGFA-232ENST00000640653 MUC2Q02817 5179 aa14.35□□□□□ -0.11
VEGFA-232ENST00000640653 A0A0U1RQV1 116 aa14.35□□□□□ -0.11
VEGFA-232ENST00000640653 C20orf202A1L168 122 aa14.35□□□□□ -0.11
VEGFA-232ENST00000640653 TTTY13Q9BZ97 58 aa14.35□□□□□ -0.11
VEGFA-232ENST00000640653 SPANXDQ9BXN6 97 aa14.33□□□□□ -0.12
VEGFA-232ENST00000640653 C5orf52A6NGY3 159 aa14.32□□□□□ -0.12
VEGFA-232ENST00000640653 LINC00518Q8N0U6 118 aa14.31□□□□□ -0.12
VEGFA-232ENST00000640653 RPS29P62273 56 aaKnown RBP14.3□□□□□ -0.12
VEGFA-232ENST00000640653 SCGB1D4Q6XE38 83 aa14.3□□□□□ -0.12
VEGFA-232ENST00000640653 C9orf153Q5TBE3 101 aa14.28□□□□□ -0.12
VEGFA-232ENST00000640653 ST20-AS1Q8NBB2 130 aa14.28□□□□□ -0.12
VEGFA-232ENST00000640653 AKR1D1P51857 326 aa14.27□□□□□ -0.13
VEGFA-232ENST00000640653 COPS9Q8WXC6 57 aa14.27□□□□□ -0.13
VEGFA-232ENST00000640653 DHRS4-AS1Q9P1J3 65 aa14.27□□□□□ -0.13
VEGFA-232ENST00000640653 MUC17Q685J3 4493 aa14.25□□□□□ -0.13
VEGFA-232ENST00000640653 ANKRD39Q53RE8 183 aa14.24□□□□□ -0.13
VEGFA-232ENST00000640653 ATOH7Q8N100 152 aa14.23□□□□□ -0.13
VEGFA-232ENST00000640653 Q8N377 158 aa14.23□□□□□ -0.13
VEGFA-232ENST00000640653 SLC25A34Q6PIV7 304 aa14.22□□□□□ -0.13
VEGFA-232ENST00000640653 IFITM1P13164 125 aa14.21□□□□□ -0.13
VEGFA-232ENST00000640653 COX7BP24311 80 aa14.21□□□□□ -0.13
VEGFA-232ENST00000640653 ELOF1P60002 83 aaKnown RBP14.21□□□□□ -0.13
VEGFA-232ENST00000640653 SLC25A20O43772 301 aa14.2□□□□□ -0.14
VEGFA-232ENST00000640653 SPRR1BP22528 89 aa14.2□□□□□ -0.14
VEGFA-232ENST00000640653 KRTAP13-3Q3SY46 172 aa14.2□□□□□ -0.14
VEGFA-232ENST00000640653 C6orf99Q4VX62 202 aa14.2□□□□□ -0.14
VEGFA-232ENST00000640653 Q6ZVH6 145 aa14.2□□□□□ -0.14
VEGFA-232ENST00000640653 PCP2Q8IVA1 136 aa14.16□□□□□ -0.14
VEGFA-232ENST00000640653 SNRPEP62304 92 aaKnown RBP14.15□□□□□ -0.14
VEGFA-232ENST00000640653 LAMTOR3Q9UHA4 124 aa14.15□□□□□ -0.14
VEGFA-232ENST00000640653 TRBV7-6A0A0J9YX20 115 aa14.14□□□□□ -0.15
VEGFA-232ENST00000640653 A6NDN8 102 aa14.13□□□□□ -0.15
VEGFA-232ENST00000640653 MUSTN1Q8IVN3 82 aa14.13□□□□□ -0.15
VEGFA-232ENST00000640653 S100A2P29034 98 aa14.11□□□□□ -0.15
VEGFA-232ENST00000640653 TAL2Q16559 108 aa14.11□□□□□ -0.15
VEGFA-232ENST00000640653 A0A1B0GWB2 263 aa14.1□□□□□ -0.15
VEGFA-232ENST00000640653 HIST3H2BBQ8N257 126 aa14.09□□□□□ -0.15
VEGFA-232ENST00000640653 DEFB105AQ8NG35 78 aa14.08□□□□□ -0.16
VEGFA-232ENST00000640653 HIST1H2BLQ99880 126 aa14.07□□□□□ -0.16
VEGFA-232ENST00000640653 LIMD2Q9BT23 127 aa14.07□□□□□ -0.16
VEGFA-232ENST00000640653 TRAV13-2A0A0B4J235 113 aa14.06□□□□□ -0.16
VEGFA-232ENST00000640653 TEX49A0A1B0GTD5 131 aa14.06□□□□□ -0.16
VEGFA-232ENST00000640653 ASB16-AS1Q495Z4 193 aa14.05□□□□□ -0.16
VEGFA-232ENST00000640653 HSBP1L1C9JCN9 74 aa14.04□□□□□ -0.16
VEGFA-232ENST00000640653 S100A1P23297 94 aa14.04□□□□□ -0.16
VEGFA-232ENST00000640653 Q1RN00 199 aa14.04□□□□□ -0.16
VEGFA-232ENST00000640653 HRCT1Q6UXD1 115 aa14.04□□□□□ -0.16
VEGFA-232ENST00000640653 A4D1N5 150 aa14.03□□□□□ -0.16
VEGFA-232ENST00000640653 S100A6P06703 90 aa14.01□□□□□ -0.17
VEGFA-232ENST00000640653 SEC61BP60468 96 aaKnown RBP14.01□□□□□ -0.17
VEGFA-232ENST00000640653 PRO1933Q9H354 126 aa14□□□□□ -0.17
VEGFA-232ENST00000640653 NHP2Q9NX24 153 aaKnown RBP14□□□□□ -0.17
VEGFA-232ENST00000640653 SMIM11BQ8TCY0 68 aa13.99□□□□□ -0.17
VEGFA-232ENST00000640653 CD164Q04900 197 aa13.98□□□□□ -0.17
VEGFA-232ENST00000640653 IGLV5-48A0A075B6I7 105 aa13.97□□□□□ -0.17
VEGFA-232ENST00000640653 FAT4Q6V0I7 4981 aa13.97□□□□□ -0.17
VEGFA-232ENST00000640653 LINC01547P58512 204 aaPredicted RBP13.96□□□□□ -0.17
VEGFA-232ENST00000640653 LCE2AQ5TA79 106 aaPredicted RBP13.96□□□□□ -0.17
VEGFA-232ENST00000640653 SMIM29Q86T20 159 aa13.95□□□□□ -0.18
VEGFA-232ENST00000640653 H7C2G1 150 aa13.94□□□□□ -0.18
VEGFA-232ENST00000640653 XP32Q5T750 250 aa13.94□□□□□ -0.18
VEGFA-232ENST00000640653 VAMP3Q15836 100 aa13.92□□□□□ -0.18
VEGFA-232ENST00000640653 SCGB1D1O95968 90 aa13.87□□□□□ -0.19
VEGFA-232ENST00000640653 Q5XG85 94 aa13.86□□□□□ -0.19
VEGFA-232ENST00000640653 LINC00575Q6W349 94 aa13.84□□□□□ -0.19
VEGFA-232ENST00000640653 KRTAP4-1Q9BYQ7 146 aa13.83□□□□□ -0.2
VEGFA-232ENST00000640653 HIST1H4GQ99525 98 aa13.82□□□□□ -0.2
VEGFA-232ENST00000640653 F8WEM9 126 aa13.81□□□□□ -0.2
VEGFA-232ENST00000640653 A0A0G2JQZ4 141 aa13.8□□□□□ -0.2
VEGFA-232ENST00000640653 hADV29S1A0JD25 119 aa13.8□□□□□ -0.2
VEGFA-232ENST00000640653 C9orf92A6NGG3 77 aa13.8□□□□□ -0.2
VEGFA-232ENST00000640653 COX8AP10176 69 aa13.79□□□□□ -0.2
VEGFA-232ENST00000640653 Q6ZQY7 126 aa13.78□□□□□ -0.2
VEGFA-232ENST00000640653 C12orf57Q99622 126 aa13.77□□□□□ -0.21
VEGFA-232ENST00000640653 C1orf195Q5TG92 126 aa13.76□□□□□ -0.21
VEGFA-232ENST00000640653 DLEU1O43261 78 aa13.75□□□□□ -0.21
VEGFA-232ENST00000640653 BVES-AS1Q5T3Y7 98 aa13.75□□□□□ -0.21
VEGFA-232ENST00000640653 TCL1BO95988 128 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms