RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 LINC00313P59037 77 aa3.43□□□□□ -1.86
SCN1A-218ENST00000640036 POLR2KP53803 58 aaKnown RBP3.43□□□□□ -1.86
SCN1A-218ENST00000640036 IGKV2D-30A0A075B6S6 120 aa3.43□□□□□ -1.86
SCN1A-218ENST00000640036 IGKV2-30P06310 120 aa3.43□□□□□ -1.86
SCN1A-218ENST00000640036 DSPP15924 2871 aaKnown RBP3.43□□□□□ -1.86
SCN1A-218ENST00000640036 MAP1AP78559 2803 aaPredicted RBP3.43□□□□□ -1.86
SCN1A-218ENST00000640036 Q8NBF4 154 aa3.43□□□□□ -1.86
SCN1A-218ENST00000640036 CRIP3Q6Q6R5 217 aa3.42□□□□□ -1.86
SCN1A-218ENST00000640036 LINC00694P0DN24 101 aa3.42□□□□□ -1.86
SCN1A-218ENST00000640036 CRIP1P50238 77 aa3.42□□□□□ -1.86
SCN1A-218ENST00000640036 KRTAP10-3P60369 221 aa3.42□□□□□ -1.86
SCN1A-218ENST00000640036 A0A0A0MQY5 61 aa3.42□□□□□ -1.86
SCN1A-218ENST00000640036 TNP2Q05952 138 aa3.42□□□□□ -1.86
SCN1A-218ENST00000640036 C8orf17Q9NRJ1 99 aa3.42□□□□□ -1.86
SCN1A-218ENST00000640036 SPINK1P00995 79 aa3.41□□□□□ -1.86
SCN1A-218ENST00000640036 SSBP3-AS1Q7Z2R9 100 aa3.41□□□□□ -1.86
SCN1A-218ENST00000640036 PLA2G2DQ9UNK4 145 aa3.41□□□□□ -1.86
SCN1A-218ENST00000640036 LINC00167Q96N53 147 aa3.41□□□□□ -1.86
SCN1A-218ENST00000640036 C9orf163Q8N9P6 203 aa3.41□□□□□ -1.86
SCN1A-218ENST00000640036 CNFNQ9BYD5 112 aa3.41□□□□□ -1.86
SCN1A-218ENST00000640036 MGAQ8IWI9 3026 aa3.41□□□□□ -1.86
SCN1A-218ENST00000640036 NSD1Q96L73 2696 aaPredicted RBP3.4□□□□□ -1.86
SCN1A-218ENST00000640036 ZNF861PO60384 105 aa3.4□□□□□ -1.87
SCN1A-218ENST00000640036 Q6ZSA8 131 aa3.4□□□□□ -1.87
SCN1A-218ENST00000640036 CDC42SE1Q9NRR8 79 aa3.4□□□□□ -1.87
SCN1A-218ENST00000640036 MRPS12O15235 138 aaKnown RBP3.4□□□□□ -1.87
SCN1A-218ENST00000640036 C11orf72Q8NBR9 251 aa3.4□□□□□ -1.87
SCN1A-218ENST00000640036 IGLV1-50A0A075B6I6 118 aa3.4□□□□□ -1.87
SCN1A-218ENST00000640036 Q96NJ1 140 aa3.4□□□□□ -1.87
SCN1A-218ENST00000640036 C11orf21Q9P2W6 132 aa3.4□□□□□ -1.87
SCN1A-218ENST00000640036 A0A087WSZ3 146 aa3.39□□□□□ -1.87
SCN1A-218ENST00000640036 OXTP01178 125 aa3.39□□□□□ -1.87
SCN1A-218ENST00000640036 CD164Q04900 197 aa3.39□□□□□ -1.87
SCN1A-218ENST00000640036 UBR5O95071 2799 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-218ENST00000640036 TENM4Q6N022 2769 aa3.39□□□□□ -1.87
SCN1A-218ENST00000640036 GVQW2A0A096LPI5 108 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-218ENST00000640036 IGLV7-46A0A075B6I9 117 aa3.39□□□□□ -1.87
SCN1A-218ENST00000640036 LAMA2P24043 3122 aaKnown RBP3.39□□□□□ -1.87
SCN1A-218ENST00000640036 Q9UF83 564 aa3.39□□□□□ -1.87
SCN1A-218ENST00000640036 Q5VSD8 79 aa3.38□□□□□ -1.87
SCN1A-218ENST00000640036 USP34Q70CQ2 3546 aa3.38□□□□□ -1.87
SCN1A-218ENST00000640036 SOSTDC1Q6X4U4 206 aa3.38□□□□□ -1.87
SCN1A-218ENST00000640036 CRYBG3Q68DQ2 2970 aa3.38□□□□□ -1.87
SCN1A-218ENST00000640036 FRYQ5TBA9 3013 aa3.38□□□□□ -1.87
SCN1A-218ENST00000640036 HRES1P13985 223 aa3.38□□□□□ -1.87
SCN1A-218ENST00000640036 SEC61BP60468 96 aaKnown RBP3.38□□□□□ -1.87
SCN1A-218ENST00000640036 RANBP2P49792 3224 aaKnown RBP3.37□□□□□ -1.87
SCN1A-218ENST00000640036 SMIM1B2RUZ4 78 aa3.37□□□□□ -1.87
SCN1A-218ENST00000640036 PCOTHQ58A44 107 aa3.37□□□□□ -1.87
SCN1A-218ENST00000640036 LINC01600Q96MT4 127 aa3.37□□□□□ -1.87
SCN1A-218ENST00000640036 IGLV5-37A0A075B6J1 123 aa3.37□□□□□ -1.87
SCN1A-218ENST00000640036 PRUNE2Q8WUY3 3088 aa3.36□□□□□ -1.87
SCN1A-218ENST00000640036 IGLV7-43P04211 117 aa3.36□□□□□ -1.87
SCN1A-218ENST00000640036 PRR15Q8IV56 129 aa3.36□□□□□ -1.87
SCN1A-218ENST00000640036 A8MUN3 132 aa3.35□□□□□ -1.87
SCN1A-218ENST00000640036 LOC110117498A0A087WWA1 95 aa3.35□□□□□ -1.87
SCN1A-218ENST00000640036 MIR22HGQ0VDD5 57 aa3.35□□□□□ -1.87
SCN1A-218ENST00000640036 C2orf91Q6ZV80 131 aa3.35□□□□□ -1.87
SCN1A-218ENST00000640036 PRR3P79522 188 aaKnown RBP3.35□□□□□ -1.87
SCN1A-218ENST00000640036 TRBV7-4A0A0J9YYF1 115 aa3.34□□□□□ -1.87
SCN1A-218ENST00000640036 LCA10Q71F78 164 aa3.34□□□□□ -1.87
SCN1A-218ENST00000640036 C9orf92A6NGG3 77 aa3.34□□□□□ -1.88
SCN1A-218ENST00000640036 IGHV3OR16-9A0A0B4J2B5 98 aa3.33□□□□□ -1.88
SCN1A-218ENST00000640036 LINC00846Q9NV44 126 aa3.33□□□□□ -1.88
SCN1A-218ENST00000640036 A0A087WVE0 104 aa3.33□□□□□ -1.88
SCN1A-218ENST00000640036 IGIPA6NJ69 53 aa3.33□□□□□ -1.88
SCN1A-218ENST00000640036 CHD9Q3L8U1 2897 aa3.33□□□□□ -1.88
SCN1A-218ENST00000640036 A8MWP4 228 aa3.32□□□□□ -1.88
SCN1A-218ENST00000640036 WDFY4Q6ZS81 3184 aa3.32□□□□□ -1.88
SCN1A-218ENST00000640036 CHD7Q9P2D1 2997 aa3.32□□□□□ -1.88
SCN1A-218ENST00000640036 AMELXQ99217 191 aa3.32□□□□□ -1.88
SCN1A-218ENST00000640036 DMAC1Q96GE9 116 aa3.32□□□□□ -1.88
SCN1A-218ENST00000640036 TTTY13Q9BZ97 58 aa3.31□□□□□ -1.88
SCN1A-218ENST00000640036 COX8CQ7Z4L0 72 aa3.31□□□□□ -1.88
SCN1A-218ENST00000640036 Q6ZQT0 140 aa3.31□□□□□ -1.88
SCN1A-218ENST00000640036 SPANXA2-OT1Q8N9U9 137 aa3.31□□□□□ -1.88
SCN1A-218ENST00000640036 Q1T7F1 81 aa3.3□□□□□ -1.88
SCN1A-218ENST00000640036 ST20-AS1Q8NBB2 130 aa3.3□□□□□ -1.88
SCN1A-218ENST00000640036 FRYLO94915 3013 aa3.3□□□□□ -1.88
SCN1A-218ENST00000640036 IGLV6-57P01721 117 aa3.3□□□□□ -1.88
SCN1A-218ENST00000640036 MKI67P46013 3256 aaKnown RBP3.3□□□□□ -1.88
SCN1A-218ENST00000640036 CNBPP62633 177 aaKnown RBP3.3□□□□□ -1.88
SCN1A-218ENST00000640036 Q6ZRX8 168 aa3.3□□□□□ -1.88
SCN1A-218ENST00000640036 DEFB116Q30KQ4 102 aa3.3□□□□□ -1.88
SCN1A-218ENST00000640036 C9orf129Q5T035 196 aaKnown RBP3.3□□□□□ -1.88
SCN1A-218ENST00000640036 HIVEP1P15822 2718 aa3.29□□□□□ -1.88
SCN1A-218ENST00000640036 LAMA3Q16787 3333 aa3.29□□□□□ -1.88
SCN1A-218ENST00000640036 CFAP54Q96N23 3096 aa3.29□□□□□ -1.88
SCN1A-218ENST00000640036 MRPL34Q9BQ48 92 aaKnown RBP3.29□□□□□ -1.88
SCN1A-218ENST00000640036 SMIM29Q86T20 159 aa3.29□□□□□ -1.88
SCN1A-218ENST00000640036 FAM19A4Q96LR4 140 aa3.29□□□□□ -1.88
SCN1A-218ENST00000640036 OBSCN-AS1Q96MR7 158 aa3.28□□□□□ -1.88
SCN1A-218ENST00000640036 H7BZZ5 65 aa3.28□□□□□ -1.88
SCN1A-218ENST00000640036 PRR26Q8N8Z3 221 aa3.28□□□□□ -1.88
SCN1A-218ENST00000640036 LINC00612Q8N6U2 182 aa3.27□□□□□ -1.89
SCN1A-218ENST00000640036 COA5Q86WW8 74 aa3.27□□□□□ -1.89
SCN1A-218ENST00000640036 TRIOO75962 3097 aa3.27□□□□□ -1.89
SCN1A-218ENST00000640036 A8MTW9 85 aa3.27□□□□□ -1.89
SCN1A-218ENST00000640036 PRR34Q9NV39 138 aa3.27□□□□□ -1.89
SCN1A-218ENST00000640036 KLK9Q2XQG4 91 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms