RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 KDM3BQ7LBC6 1761 aa0.78□□□□□ -2.28
CD44-239ENST00000639002 SPENQ96T58 3664 aaKnown RBP0.78□□□□□ -2.28
CD44-239ENST00000639002 A0A096LNT2 108 aa0.78□□□□□ -2.28
CD44-239ENST00000639002 IQCF6A8MYZ5 107 aa0.78□□□□□ -2.28
CD44-239ENST00000639002 SMIM13P0DJ93 91 aa0.78□□□□□ -2.28
CD44-239ENST00000639002 IGLC2P0DOY2 106 aa0.78□□□□□ -2.28
CD44-239ENST00000639002 IGLC3P0DOY3 106 aa0.78□□□□□ -2.28
CD44-239ENST00000639002 SPINT3P49223 89 aa0.78□□□□□ -2.28
CD44-239ENST00000639002 RPL37P61927 97 aaKnown RBP0.78□□□□□ -2.28
CD44-239ENST00000639002 HAMPP81172 84 aa0.78□□□□□ -2.28
CD44-239ENST00000639002 BVES-AS1Q5T3Y7 98 aa0.78□□□□□ -2.28
CD44-239ENST00000639002 Q6JHZ5 121 aa0.78□□□□□ -2.28
CD44-239ENST00000639002 LINC01600Q96MT4 127 aa0.78□□□□□ -2.28
CD44-239ENST00000639002 PSENENQ9NZ42 101 aa0.78□□□□□ -2.28
CD44-239ENST00000639002 ZMYM4Q5VZL5 1548 aa0.78□□□□□ -2.28
CD44-239ENST00000639002 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP0.78□□□□□ -2.28
CD44-239ENST00000639002 UGGT2Q9NYU1 1516 aa0.78□□□□□ -2.28
CD44-239ENST00000639002 DNMBPQ6XZF7 1577 aa0.78□□□□□ -2.29
CD44-239ENST00000639002 THOC2Q8NI27 1593 aaKnown RBP0.78□□□□□ -2.29
CD44-239ENST00000639002 ALKQ9UM73 1620 aa0.78□□□□□ -2.29
CD44-239ENST00000639002 NBPF19A0A087WUL8 3843 aa0.78□□□□□ -2.29
CD44-239ENST00000639002 A0A087WVE0 104 aa0.77□□□□□ -2.29
CD44-239ENST00000639002 GVQW2A0A096LPI5 108 aaPredicted RBP0.77□□□□□ -2.29
CD44-239ENST00000639002 TRBV6-1A0A0K0K1D8 114 aa0.77□□□□□ -2.29
CD44-239ENST00000639002 UMAD1C9J7I0 102 aa0.77□□□□□ -2.29
CD44-239ENST00000639002 H0Y9P7 68 aa0.77□□□□□ -2.29
CD44-239ENST00000639002 LY6G6CO95867 125 aa0.77□□□□□ -2.29
CD44-239ENST00000639002 KRTAP10-4P60372 401 aaPredicted RBP0.77□□□□□ -2.29
CD44-239ENST00000639002 UBE2DNLQ8IWF7 75 aa0.77□□□□□ -2.29
CD44-239ENST00000639002 SPRR4Q96PI1 79 aa0.77□□□□□ -2.29
CD44-239ENST00000639002 PROK2Q9HC23 129 aa0.77□□□□□ -2.29
CD44-239ENST00000639002 CLIP1P30622 1438 aa0.77□□□□□ -2.29
CD44-239ENST00000639002 NCOA2Q15596 1464 aa0.77□□□□□ -2.29
CD44-239ENST00000639002 NEXMIFQ5QGS0 1516 aa0.77□□□□□ -2.29
CD44-239ENST00000639002 ABCA8O94911 1581 aa0.77□□□□□ -2.29
CD44-239ENST00000639002 TMEM131LA2VDJ0 1609 aa0.77□□□□□ -2.29
CD44-239ENST00000639002 MUC12Q9UKN1 5478 aa0.77□□□□□ -2.29
CD44-239ENST00000639002 MYO7BQ6PIF6 2116 aa0.77□□□□□ -2.29
CD44-239ENST00000639002 HIVEP1P15822 2718 aa0.77□□□□□ -2.29
CD44-239ENST00000639002 PLXNB2O15031 1838 aa0.76□□□□□ -2.29
CD44-239ENST00000639002 COL14A1Q05707 1796 aaKnown RBP0.76□□□□□ -2.29
CD44-239ENST00000639002 A0A0G2JMZ2 1700 aa0.76□□□□□ -2.29
CD44-239ENST00000639002 XRN1Q8IZH2 1706 aaKnown RBP0.76□□□□□ -2.29
CD44-239ENST00000639002 KIAA0556O60303 1618 aa0.76□□□□□ -2.29
CD44-239ENST00000639002 TARBP1Q13395 1621 aaKnown RBP0.76□□□□□ -2.29
CD44-239ENST00000639002 BIVM-ERCC5R4GMW8 1640 aa0.76□□□□□ -2.29
CD44-239ENST00000639002 A0A087WXM4 84 aa0.76□□□□□ -2.29
CD44-239ENST00000639002 A0A1B0GUT8 65 aa0.76□□□□□ -2.29
CD44-239ENST00000639002 CFDP00746 253 aaPredicted RBP0.76□□□□□ -2.29
CD44-239ENST00000639002 ATP5EP2Q5VTU8 51 aa0.76□□□□□ -2.29
CD44-239ENST00000639002 C6orf201Q7Z4U5 140 aa0.76□□□□□ -2.29
CD44-239ENST00000639002 DEFB107AQ8IZN7 70 aa0.76□□□□□ -2.29
CD44-239ENST00000639002 C18orf32Q8TCD1 76 aa0.76□□□□□ -2.29
CD44-239ENST00000639002 FAT3Q8TDW7 4589 aa0.76□□□□□ -2.29
CD44-239ENST00000639002 APC2O95996 2303 aa0.76□□□□□ -2.29
CD44-239ENST00000639002 PLCH1Q4KWH8 1693 aa0.75□□□□□ -2.29
CD44-239ENST00000639002 IQGAP3Q86VI3 1631 aa0.75□□□□□ -2.29
CD44-239ENST00000639002 MROH1Q8NDA8 1641 aa0.75□□□□□ -2.29
CD44-239ENST00000639002 ADAMTS12P58397 1594 aa0.75□□□□□ -2.29
CD44-239ENST00000639002 URB2Q14146 1524 aaKnown RBP0.75□□□□□ -2.29
CD44-239ENST00000639002 DUOX2Q9NRD8 1548 aa0.75□□□□□ -2.29
CD44-239ENST00000639002 NKTRP30414 1462 aaKnown RBP0.75□□□□□ -2.29
CD44-239ENST00000639002 C1orf167Q5SNV9 1468 aa0.75□□□□□ -2.29
CD44-239ENST00000639002 CSPG4Q6UVK1 2322 aa0.75□□□□□ -2.29
CD44-239ENST00000639002 TRIOO75962 3097 aa0.75□□□□□ -2.29
CD44-239ENST00000639002 NDUFB1O75438 58 aa0.75□□□□□ -2.29
CD44-239ENST00000639002 C10orf113Q5VZT2 155 aa0.75□□□□□ -2.29
CD44-239ENST00000639002 UBE2D4Q9Y2X8 147 aa0.75□□□□□ -2.29
CD44-239ENST00000639002 DCHS2Q6V1P9 2916 aa0.75□□□□□ -2.29
CD44-239ENST00000639002 UBR3Q6ZT12 1888 aa0.75□□□□□ -2.29
CD44-239ENST00000639002 PAPPA2Q9BXP8 1791 aa0.75□□□□□ -2.29
CD44-239ENST00000639002 ARFGEF2Q9Y6D5 1785 aa0.75□□□□□ -2.29
CD44-239ENST00000639002 CFAP43Q8NDM7 1665 aa0.75□□□□□ -2.29
CD44-239ENST00000639002 MED13Q9UHV7 2174 aa0.74□□□□□ -2.29
CD44-239ENST00000639002 SLIT1O75093 1534 aa0.74□□□□□ -2.29
CD44-239ENST00000639002 MAP1AP78559 2803 aaPredicted RBP0.74□□□□□ -2.29
CD44-239ENST00000639002 A0A0D9SFI3 127 aa0.74□□□□□ -2.29
CD44-239ENST00000639002 C10orf142B7Z368 130 aa0.74□□□□□ -2.29
CD44-239ENST00000639002 SPINK9Q5DT21 86 aa0.74□□□□□ -2.29
CD44-239ENST00000639002 SPATA8Q6RVD6 105 aa0.74□□□□□ -2.29
CD44-239ENST00000639002 LINC00472Q9H8W2 130 aa0.74□□□□□ -2.29
CD44-239ENST00000639002 ABCA4P78363 2273 aa0.74□□□□□ -2.29
CD44-239ENST00000639002 PIK3C2BO00750 1634 aa0.74□□□□□ -2.29
CD44-239ENST00000639002 SSC5DA1L4H1 1573 aa0.74□□□□□ -2.29
CD44-239ENST00000639002 ATP7BP35670 1465 aa0.73□□□□□ -2.29
CD44-239ENST00000639002 RALGAPBQ86X10 1494 aa0.73□□□□□ -2.29
CD44-239ENST00000639002 ATMQ13315 3056 aa0.73□□□□□ -2.29
CD44-239ENST00000639002 LRRC37AA6NMS7 1700 aa0.73□□□□□ -2.29
CD44-239ENST00000639002 RGPD1P0DJD0 1748 aa0.73□□□□□ -2.29
CD44-239ENST00000639002 NCOA6Q14686 2063 aaPredicted RBP0.73□□□□□ -2.29
CD44-239ENST00000639002 A0A1B0GU69 56 aa0.73□□□□□ -2.29
CD44-239ENST00000639002 G3V318 75 aa0.73□□□□□ -2.29
CD44-239ENST00000639002 K7EIL1 84 aa0.73□□□□□ -2.29
CD44-239ENST00000639002 IFI27P40305 119 aaPredicted RBP0.73□□□□□ -2.29
CD44-239ENST00000639002 RPL38P63173 70 aaKnown RBP0.73□□□□□ -2.29
CD44-239ENST00000639002 DEFB121Q5J5C9 76 aa0.73□□□□□ -2.29
CD44-239ENST00000639002 S100ZQ8WXG8 99 aa0.73□□□□□ -2.29
CD44-239ENST00000639002 LRP6O75581 1613 aa0.73□□□□□ -2.29
CD44-239ENST00000639002 PTPRQQ9UMZ3 2332 aa0.73□□□□□ -2.29
CD44-239ENST00000639002 INO80Q9ULG1 1556 aaPredicted RBP0.73□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms