RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 LINC00846Q9NV44 126 aa4.09□□□□□ -1.75
SCN1A-217ENST00000637988 Q6ZQT0 140 aa4.09□□□□□ -1.75
SCN1A-217ENST00000637988 UQCR11O14957 56 aa4.09□□□□□ -1.76
SCN1A-217ENST00000637988 K7EQZ3 153 aa4.08□□□□□ -1.76
SCN1A-217ENST00000637988 C9orf129Q5T035 196 aaKnown RBP4.08□□□□□ -1.76
SCN1A-217ENST00000637988 A0A1B0GVX0 72 aa4.07□□□□□ -1.76
SCN1A-217ENST00000637988 IGLV5-45A0A087WSX0 123 aa4.07□□□□□ -1.76
SCN1A-217ENST00000637988 CAMK2N1Q7Z7J9 78 aa4.07□□□□□ -1.76
SCN1A-217ENST00000637988 LUZP6Q538Z0 58 aa4.07□□□□□ -1.76
SCN1A-217ENST00000637988 KCNQ1DNQ9H478 68 aa4.06□□□□□ -1.76
SCN1A-217ENST00000637988 EP400Q96L91 3159 aa4.05□□□□□ -1.76
SCN1A-217ENST00000637988 LINC01546A6NGU7 62 aa4.05□□□□□ -1.76
SCN1A-217ENST00000637988 SEC61BP60468 96 aaKnown RBP4.05□□□□□ -1.76
SCN1A-217ENST00000637988 PLA2G2DQ9UNK4 145 aa4.04□□□□□ -1.76
SCN1A-217ENST00000637988 C8orf17Q9NRJ1 99 aa4.04□□□□□ -1.76
SCN1A-217ENST00000637988 CFAP46Q8IYW2 2715 aa4.04□□□□□ -1.76
SCN1A-217ENST00000637988 VPREB1P12018 145 aa4.04□□□□□ -1.76
SCN1A-217ENST00000637988 CDC42SE1Q9NRR8 79 aa4.04□□□□□ -1.76
SCN1A-217ENST00000637988 TLX1NBP0CAT3 122 aa4.03□□□□□ -1.76
SCN1A-217ENST00000637988 FLNBO75369 2602 aaKnown RBP4.03□□□□□ -1.76
SCN1A-217ENST00000637988 CNBPP62633 177 aaKnown RBP4.03□□□□□ -1.76
SCN1A-217ENST00000637988 MGAM2Q2M2H8 2515 aa4.03□□□□□ -1.76
SCN1A-217ENST00000637988 PRRC2CQ9Y520 2896 aaKnown RBP4.03□□□□□ -1.76
SCN1A-217ENST00000637988 MIR22HGQ0VDD5 57 aa4.02□□□□□ -1.77
SCN1A-217ENST00000637988 IGFL1Q6UW32 110 aa4.02□□□□□ -1.77
SCN1A-217ENST00000637988 PRR15Q8IV56 129 aa4.02□□□□□ -1.77
SCN1A-217ENST00000637988 IGLV5-48A0A075B6I7 105 aa4.02□□□□□ -1.77
SCN1A-217ENST00000637988 A0A0D9SG42 100 aa4.02□□□□□ -1.77
SCN1A-217ENST00000637988 HELZ2Q9BYK8 2649 aaKnown RBP4.01□□□□□ -1.77
SCN1A-217ENST00000637988 COA5Q86WW8 74 aa4.01□□□□□ -1.77
SCN1A-217ENST00000637988 CENPFP49454 3210 aa4.01□□□□□ -1.77
SCN1A-217ENST00000637988 C15orf56Q8N910 161 aa4.01□□□□□ -1.77
SCN1A-217ENST00000637988 HECTD1Q9ULT8 2610 aa4.01□□□□□ -1.77
SCN1A-217ENST00000637988 CD164Q04900 197 aa4□□□□□ -1.77
SCN1A-217ENST00000637988 SPRR4Q96PI1 79 aa4□□□□□ -1.77
SCN1A-217ENST00000637988 PRR34Q9NV39 138 aa3.99□□□□□ -1.77
SCN1A-217ENST00000637988 OXTP01178 125 aa3.99□□□□□ -1.77
SCN1A-217ENST00000637988 CYP4F30PQ9H0H9 118 aa3.99□□□□□ -1.77
SCN1A-217ENST00000637988 MAST4O15021 2626 aa3.99□□□□□ -1.77
SCN1A-217ENST00000637988 RPS28P62857 69 aaKnown RBP3.99□□□□□ -1.77
SCN1A-217ENST00000637988 A8MUN3 132 aa3.98□□□□□ -1.77
SCN1A-217ENST00000637988 LINC00612Q8N6U2 182 aa3.98□□□□□ -1.77
SCN1A-217ENST00000637988 TNP2Q05952 138 aa3.98□□□□□ -1.77
SCN1A-217ENST00000637988 ANAPC11Q9NYG5 84 aa3.98□□□□□ -1.77
SCN1A-217ENST00000637988 FAM229BQ4G0N7 80 aa3.98□□□□□ -1.77
SCN1A-217ENST00000637988 URB1-AS1Q96HZ7 61 aa3.98□□□□□ -1.77
SCN1A-217ENST00000637988 ERC2-IT1O76042 136 aa3.98□□□□□ -1.77
SCN1A-217ENST00000637988 FAM104AQ969W3 186 aa3.97□□□□□ -1.77
SCN1A-217ENST00000637988 CSAG1Q6PB30 78 aa3.97□□□□□ -1.77
SCN1A-217ENST00000637988 S4R3F8 94 aa3.97□□□□□ -1.77
SCN1A-217ENST00000637988 KRTAP10-3P60369 221 aa3.97□□□□□ -1.77
SCN1A-217ENST00000637988 Q5VSD8 79 aa3.97□□□□□ -1.77
SCN1A-217ENST00000637988 PLAC4Q8WY50 150 aa3.96□□□□□ -1.78
SCN1A-217ENST00000637988 FAM218AQ96MZ4 157 aa3.96□□□□□ -1.78
SCN1A-217ENST00000637988 FLNAP21333 2647 aaKnown RBP3.96□□□□□ -1.78
SCN1A-217ENST00000637988 A0A096LNJ9 63 aa3.96□□□□□ -1.78
SCN1A-217ENST00000637988 ITPR3Q14573 2671 aa3.96□□□□□ -1.78
SCN1A-217ENST00000637988 Q8N1X5 172 aa3.96□□□□□ -1.78
SCN1A-217ENST00000637988 KMT2BQ9UMN6 2715 aaPredicted RBP3.95□□□□□ -1.78
SCN1A-217ENST00000637988 PRR26Q8N8Z3 221 aa3.95□□□□□ -1.78
SCN1A-217ENST00000637988 A0A1W2PNN7 141 aa3.94□□□□□ -1.78
SCN1A-217ENST00000637988 PRO0628Q9UI54 55 aa3.94□□□□□ -1.78
SCN1A-217ENST00000637988 ATRQ13535 2644 aa3.93□□□□□ -1.78
SCN1A-217ENST00000637988 Q8N377 158 aa3.93□□□□□ -1.78
SCN1A-217ENST00000637988 KLK9Q2XQG4 91 aa3.92□□□□□ -1.78
SCN1A-217ENST00000637988 STAB1Q9NY15 2570 aa3.92□□□□□ -1.78
SCN1A-217ENST00000637988 A0A096LNT2 108 aa3.92□□□□□ -1.78
SCN1A-217ENST00000637988 LCE6AA0A183 80 aa3.92□□□□□ -1.78
SCN1A-217ENST00000637988 R4GN34 69 aa3.91□□□□□ -1.78
SCN1A-217ENST00000637988 LINC00310P59036 64 aa3.9□□□□□ -1.79
SCN1A-217ENST00000637988 DMBT1Q9UGM3 2413 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-217ENST00000637988 Q1T7F1 81 aa3.88□□□□□ -1.79
SCN1A-217ENST00000637988 KRTAP1-3Q8IUG1 177 aa3.87□□□□□ -1.79
SCN1A-217ENST00000637988 SPANXA2-OT1Q8N9U9 137 aa3.87□□□□□ -1.79
SCN1A-217ENST00000637988 SRCAPQ6ZRS2 3230 aa3.87□□□□□ -1.79
SCN1A-217ENST00000637988 GIG44P09565 113 aaPredicted RBP3.87□□□□□ -1.79
SCN1A-217ENST00000637988 PLAC8Q9NZF1 115 aa3.87□□□□□ -1.79
SCN1A-217ENST00000637988 A0A1B0GU33 70 aa3.86□□□□□ -1.79
SCN1A-217ENST00000637988 AKAP13Q12802 2813 aa3.86□□□□□ -1.79
SCN1A-217ENST00000637988 ZCCHC13Q8WW36 166 aaKnown RBP3.86□□□□□ -1.79
SCN1A-217ENST00000637988 DMAC1Q96GE9 116 aa3.86□□□□□ -1.79
SCN1A-217ENST00000637988 FP248Q71RG6 208 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-217ENST00000637988 H7BZZ5 65 aa3.85□□□□□ -1.79
SCN1A-217ENST00000637988 BAHCC1Q9P281 2608 aa3.85□□□□□ -1.79
SCN1A-217ENST00000637988 LITAFQ99732 161 aa3.85□□□□□ -1.79
SCN1A-217ENST00000637988 TEX15Q9BXT5 2789 aa3.85□□□□□ -1.79
SCN1A-217ENST00000637988 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.84□□□□□ -1.79
SCN1A-217ENST00000637988 NBEAL1Q6ZS30 2694 aa3.84□□□□□ -1.79
SCN1A-217ENST00000637988 KRTAP1-1Q07627 177 aa3.84□□□□□ -1.79
SCN1A-217ENST00000637988 C4orf26Q17RF5 130 aa3.84□□□□□ -1.8
SCN1A-217ENST00000637988 A0A0G2JQZ4 141 aa3.83□□□□□ -1.8
SCN1A-217ENST00000637988 WIPF1O43516 503 aa3.82□□□□□ -1.8
SCN1A-217ENST00000637988 KTN1-AS1Q86SY8 53 aa3.81□□□□□ -1.8
SCN1A-217ENST00000637988 LCA10Q71F78 164 aa3.81□□□□□ -1.8
SCN1A-217ENST00000637988 CENPEQ02224 2701 aa3.8□□□□□ -1.8
SCN1A-217ENST00000637988 KLKP1Q107X0 134 aa3.79□□□□□ -1.8
SCN1A-217ENST00000637988 SETXQ7Z333 2677 aaKnown RBP3.79□□□□□ -1.8
SCN1A-217ENST00000637988 UNC79Q9P2D8 2635 aa3.78□□□□□ -1.8
SCN1A-217ENST00000637988 SMCPP49901 116 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-217ENST00000637988 SPINK7P58062 85 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms