RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 ETDCA0A1B0GVM5 59 aa10.74□□□□□ -0.69
CLN3-247ENST00000636351 KRTAP13-1Q8IUC0 172 aa10.73□□□□□ -0.69
CLN3-247ENST00000636351 TRAV23DV6A0A075B6W5 121 aa10.72□□□□□ -0.69
CLN3-247ENST00000636351 IGLV6-57P01721 117 aa10.72□□□□□ -0.69
CLN3-247ENST00000636351 MUSTN1Q8IVN3 82 aa10.72□□□□□ -0.69
CLN3-247ENST00000636351 C14orf144Q96I85 54 aa10.72□□□□□ -0.69
CLN3-247ENST00000636351 PYY3Q5JQD4 70 aa10.71□□□□□ -0.69
CLN3-247ENST00000636351 LINC00518Q8N0U6 118 aa10.71□□□□□ -0.69
CLN3-247ENST00000636351 LINC00337Q8N6G1 96 aa10.7□□□□□ -0.7
CLN3-247ENST00000636351 HIGD2AQ9BW72 106 aa10.7□□□□□ -0.7
CLN3-247ENST00000636351 CBY1Q9Y3M2 126 aa10.7□□□□□ -0.7
CLN3-247ENST00000636351 SPRR1AP35321 89 aa10.69□□□□□ -0.7
CLN3-247ENST00000636351 PPDPFQ9H3Y8 114 aa10.69□□□□□ -0.7
CLN3-247ENST00000636351 DLEU1O43261 78 aa10.68□□□□□ -0.7
CLN3-247ENST00000636351 SLC25A34Q6PIV7 304 aa10.67□□□□□ -0.7
CLN3-247ENST00000636351 HIST1H4GQ99525 98 aa10.67□□□□□ -0.7
CLN3-247ENST00000636351 ZNF73O43830 326 aaPredicted RBP10.66□□□□□ -0.7
CLN3-247ENST00000636351 KRTAP1-4P0C5Y4 121 aa10.66□□□□□ -0.7
CLN3-247ENST00000636351 A6NDN8 102 aa10.65□□□□□ -0.7
CLN3-247ENST00000636351 KRTAP4-16G5E9R7 235 aaPredicted RBP10.65□□□□□ -0.7
CLN3-247ENST00000636351 PRR26Q8N8Z3 221 aa10.65□□□□□ -0.7
CLN3-247ENST00000636351 B5MCH6 92 aa10.64□□□□□ -0.71
CLN3-247ENST00000636351 HINT1P49773 126 aaPredicted RBP10.64□□□□□ -0.71
CLN3-247ENST00000636351 LPAP08519 4548 aa10.63□□□□□ -0.71
CLN3-247ENST00000636351 TRAV13-2A0A0B4J235 113 aa10.62□□□□□ -0.71
CLN3-247ENST00000636351 Q6ZRX8 168 aa10.62□□□□□ -0.71
CLN3-247ENST00000636351 A4D1N5 150 aa10.61□□□□□ -0.71
CLN3-247ENST00000636351 RPL13AP40429 203 aaKnown RBP10.6□□□□□ -0.71
CLN3-247ENST00000636351 SMCR5Q8TEV8 140 aa10.6□□□□□ -0.71
CLN3-247ENST00000636351 ANAPC11Q9NYG5 84 aa10.6□□□□□ -0.71
CLN3-247ENST00000636351 HIGD1BQ9P298 99 aa10.6□□□□□ -0.71
CLN3-247ENST00000636351 ZNF706Q9Y5V0 76 aaPredicted RBP10.6□□□□□ -0.71
CLN3-247ENST00000636351 C2orf91Q6ZV80 131 aa10.59□□□□□ -0.71
CLN3-247ENST00000636351 C12orf57Q99622 126 aa10.59□□□□□ -0.71
CLN3-247ENST00000636351 CRYGAP11844 174 aa10.58□□□□□ -0.72
CLN3-247ENST00000636351 C6orf99Q4VX62 202 aa10.58□□□□□ -0.72
CLN3-247ENST00000636351 Q9BRP9 147 aa10.57□□□□□ -0.72
CLN3-247ENST00000636351 A0A087X002 238 aa10.56□□□□□ -0.72
CLN3-247ENST00000636351 SPRR4Q96PI1 79 aa10.56□□□□□ -0.72
CLN3-247ENST00000636351 COX7BP24311 80 aa10.55□□□□□ -0.72
CLN3-247ENST00000636351 ERC2-IT1O76042 136 aa10.54□□□□□ -0.72
CLN3-247ENST00000636351 FAM229BQ4G0N7 80 aa10.54□□□□□ -0.72
CLN3-247ENST00000636351 TYMSOSQ8TAI1 123 aa10.53□□□□□ -0.72
CLN3-247ENST00000636351 SMIM11BQ8TCY0 68 aa10.53□□□□□ -0.72
CLN3-247ENST00000636351 ELOF1P60002 83 aaKnown RBP10.52□□□□□ -0.73
CLN3-247ENST00000636351 DHRS4-AS1Q9P1J3 65 aa10.52□□□□□ -0.73
CLN3-247ENST00000636351 UQCR10Q9UDW1 63 aa10.52□□□□□ -0.73
CLN3-247ENST00000636351 TAL2Q16559 108 aa10.51□□□□□ -0.73
CLN3-247ENST00000636351 GAGE2AQ6NT46 116 aa10.51□□□□□ -0.73
CLN3-247ENST00000636351 TMEM238LA0A1B0GVL6 79 aa10.5□□□□□ -0.73
CLN3-247ENST00000636351 A0A1B0GWB2 263 aa10.5□□□□□ -0.73
CLN3-247ENST00000636351 A6NJY4 79 aa10.5□□□□□ -0.73
CLN3-247ENST00000636351 CEND1Q8N111 149 aa10.5□□□□□ -0.73
CLN3-247ENST00000636351 RAB37Q96AX2 223 aa10.5□□□□□ -0.73
CLN3-247ENST00000636351 TRBV7-6A0A0J9YX20 115 aa10.49□□□□□ -0.73
CLN3-247ENST00000636351 SMIM6P0DI80 62 aa10.49□□□□□ -0.73
CLN3-247ENST00000636351 H7C2G1 150 aa10.48□□□□□ -0.73
CLN3-247ENST00000636351 HSD52Q0P140 79 aa10.48□□□□□ -0.73
CLN3-247ENST00000636351 KRTAP13-2Q52LG2 175 aa10.48□□□□□ -0.73
CLN3-247ENST00000636351 CFC1BP0CG36 223 aa10.47□□□□□ -0.73
CLN3-247ENST00000636351 CFC1P0CG37 223 aa10.47□□□□□ -0.73
CLN3-247ENST00000636351 ST20-AS1Q8NBB2 130 aa10.47□□□□□ -0.73
CLN3-247ENST00000636351 VAMP3Q15836 100 aa10.46□□□□□ -0.73
CLN3-247ENST00000636351 C3orf22Q8N5N4 141 aa10.46□□□□□ -0.73
CLN3-247ENST00000636351 PRO1933Q9H354 126 aa10.46□□□□□ -0.73
CLN3-247ENST00000636351 A0A0B4J2C4 111 aa10.45□□□□□ -0.74
CLN3-247ENST00000636351 FXYD2P54710 66 aa10.45□□□□□ -0.74
CLN3-247ENST00000636351 LINC00483Q53H64 154 aa10.45□□□□□ -0.74
CLN3-247ENST00000636351 Q1RN00 199 aa10.43□□□□□ -0.74
CLN3-247ENST00000636351 IGLV9-49A0A0B4J1Y8 123 aa10.42□□□□□ -0.74
CLN3-247ENST00000636351 SLC25A20O43772 301 aa10.42□□□□□ -0.74
CLN3-247ENST00000636351 NHP2Q9NX24 153 aaKnown RBP10.42□□□□□ -0.74
CLN3-247ENST00000636351 MUC2Q02817 5179 aa10.41□□□□□ -0.74
CLN3-247ENST00000636351 LOC105371267A0A1B0GV96 52 aa10.41□□□□□ -0.74
CLN3-247ENST00000636351 PRR4Q16378 134 aa10.4□□□□□ -0.74
CLN3-247ENST00000636351 LINC00304Q8N9R0 145 aa10.4□□□□□ -0.74
CLN3-247ENST00000636351 DEFB105AQ8NG35 78 aa10.4□□□□□ -0.74
CLN3-247ENST00000636351 TSPAN13O95857 204 aa10.39□□□□□ -0.75
CLN3-247ENST00000636351 MOBPQ13875 183 aa10.39□□□□□ -0.75
CLN3-247ENST00000636351 BVES-AS1Q5T3Y7 98 aa10.39□□□□□ -0.75
CLN3-247ENST00000636351 PRO1854Q9UHT4 67 aa10.39□□□□□ -0.75
CLN3-247ENST00000636351 C9orf153Q5TBE3 101 aa10.38□□□□□ -0.75
CLN3-247ENST00000636351 K7ERJ3 54 aa10.36□□□□□ -0.75
CLN3-247ENST00000636351 LINC00575Q6W349 94 aa10.36□□□□□ -0.75
CLN3-247ENST00000636351 Q8NBF4 154 aa10.36□□□□□ -0.75
CLN3-247ENST00000636351 TEX49A0A1B0GTD5 131 aa10.34□□□□□ -0.75
CLN3-247ENST00000636351 hADV29S1A0JD25 119 aa10.34□□□□□ -0.75
CLN3-247ENST00000636351 SPRR1BP22528 89 aa10.34□□□□□ -0.75
CLN3-247ENST00000636351 C4orf48Q5BLP8 95 aa10.34□□□□□ -0.75
CLN3-247ENST00000636351 LAMTOR3Q9UHA4 124 aa10.34□□□□□ -0.75
CLN3-247ENST00000636351 TSTD3H0UI37 97 aa10.33□□□□□ -0.76
CLN3-247ENST00000636351 CTAG1AP78358 180 aa10.31□□□□□ -0.76
CLN3-247ENST00000636351 IGLV5-48A0A075B6I7 105 aa10.3□□□□□ -0.76
CLN3-247ENST00000636351 SPAG11AQ6PDA7 123 aa10.3□□□□□ -0.76
CLN3-247ENST00000636351 Q6ZQY7 126 aa10.3□□□□□ -0.76
CLN3-247ENST00000636351 SSBP3-AS1Q7Z2R9 100 aa10.3□□□□□ -0.76
CLN3-247ENST00000636351 H0YGX0 51 aa10.29□□□□□ -0.76
CLN3-247ENST00000636351 M0R143 59 aa10.29□□□□□ -0.76
CLN3-247ENST00000636351 SNCGO76070 127 aa10.29□□□□□ -0.76
CLN3-247ENST00000636351 PSMB2P49721 201 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms