RNA–Protein interactions for RNA: ENST00000636306.1

CHD2-223, Transcript of chromodomain helicase DNA binding protein 2, human

TSL 5

Gene CHD2, Length 1,755 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD2-223	ENST00000636306	LINC00269	Q8N2A0	174 aa		7.22	□□□□□ -1.25
CHD2-223	ENST00000636306	LIMD2	Q9BT23	127 aa		7.22	□□□□□ -1.25
CHD2-223	ENST00000636306		A8MUN3	132 aa		7.21	□□□□□ -1.25
CHD2-223	ENST00000636306	ELOF1	P60002	83 aa	Known RBP	7.21	□□□□□ -1.25
CHD2-223	ENST00000636306	C4orf48	Q5BLP8	95 aa		7.21	□□□□□ -1.25
CHD2-223	ENST00000636306	LRCOL1	A6NCL2	159 aa		7.2	□□□□□ -1.26
CHD2-223	ENST00000636306	NDUFB1	O75438	58 aa		7.2	□□□□□ -1.26
CHD2-223	ENST00000636306	KIAA0087	Q14695	138 aa		7.2	□□□□□ -1.26
CHD2-223	ENST00000636306	DIRC1	Q969H9	104 aa		7.2	□□□□□ -1.26
CHD2-223	ENST00000636306	CELA1	Q9UNI1	258 aa		7.2	□□□□□ -1.26
CHD2-223	ENST00000636306	NBPF19	A0A087WUL8	3843 aa		7.2	□□□□□ -1.26
CHD2-223	ENST00000636306	SPART-AS1	P0CW21	52 aa		7.2	□□□□□ -1.26
CHD2-223	ENST00000636306	KRTAP3-3	Q9BYR6	98 aa		7.2	□□□□□ -1.26
CHD2-223	ENST00000636306	KRTAP3-2	Q9BYR7	98 aa		7.2	□□□□□ -1.26
CHD2-223	ENST00000636306	IGHV4-30-4	P0DP06	118 aa		7.19	□□□□□ -1.26
CHD2-223	ENST00000636306		A0A1B0GUV1	79 aa		7.18	□□□□□ -1.26
CHD2-223	ENST00000636306	ETDC	A0A1B0GVM5	59 aa		7.18	□□□□□ -1.26
CHD2-223	ENST00000636306		Q8N9L7	120 aa		7.18	□□□□□ -1.26
CHD2-223	ENST00000636306	FAM30A	Q9NZY2	134 aa		7.18	□□□□□ -1.26
CHD2-223	ENST00000636306	NSD1	Q96L73	2696 aa	Predicted RBP	7.18	□□□□□ -1.26
CHD2-223	ENST00000636306		Q8NAQ8	132 aa		7.18	□□□□□ -1.26
CHD2-223	ENST00000636306	NF1	P21359	2839 aa		7.17	□□□□□ -1.26
CHD2-223	ENST00000636306	C16orf90	A8MZG2	172 aa		7.17	□□□□□ -1.26
CHD2-223	ENST00000636306	HIGD2B	Q4VC39	106 aa		7.17	□□□□□ -1.26
CHD2-223	ENST00000636306	SMIM29	Q86T20	159 aa		7.17	□□□□□ -1.26
CHD2-223	ENST00000636306		Q8NDZ9	215 aa		7.17	□□□□□ -1.26
CHD2-223	ENST00000636306	FBN3	Q75N90	2809 aa		7.16	□□□□□ -1.26
CHD2-223	ENST00000636306		A6NN06	94 aa		7.16	□□□□□ -1.26
CHD2-223	ENST00000636306	OTOG	Q6ZRI0	2925 aa		7.16	□□□□□ -1.26
CHD2-223	ENST00000636306	ZNF73	O43830	326 aa	Predicted RBP	7.15	□□□□□ -1.26
CHD2-223	ENST00000636306	CHKB-CPT1B	H3BT56	60 aa		7.15	□□□□□ -1.27
CHD2-223	ENST00000636306	FN1	P02751	2386 aa	Known RBP	7.15	□□□□□ -1.27
CHD2-223	ENST00000636306		Q75L30	129 aa		7.14	□□□□□ -1.27
CHD2-223	ENST00000636306	SETD2	Q9BYW2	2564 aa	Predicted RBP	7.13	□□□□□ -1.27
CHD2-223	ENST00000636306	IGLV2-33	A0A075B6J2	118 aa	Predicted RBP	7.13	□□□□□ -1.27
CHD2-223	ENST00000636306	HCG22	E2RYF7	251 aa		7.13	□□□□□ -1.27
CHD2-223	ENST00000636306	C7orf65	Q6ZTY9	151 aa		7.13	□□□□□ -1.27
CHD2-223	ENST00000636306		Q8N9P0	234 aa	Predicted RBP	7.13	□□□□□ -1.27
CHD2-223	ENST00000636306		Q9BRP9	147 aa		7.13	□□□□□ -1.27
CHD2-223	ENST00000636306	VPREB1	P12018	145 aa		7.13	□□□□□ -1.27
CHD2-223	ENST00000636306	SPANXA2-OT1	Q8N9U9	137 aa		7.13	□□□□□ -1.27
CHD2-223	ENST00000636306	JMJD1C	Q15652	2540 aa		7.12	□□□□□ -1.27
CHD2-223	ENST00000636306		A0A0J9YWU9	116 aa		7.12	□□□□□ -1.27
CHD2-223	ENST00000636306	EGFEM1P	Q0D2K5	195 aa		7.12	□□□□□ -1.27
CHD2-223	ENST00000636306	KRTAP24-1	Q3LI83	254 aa		7.12	□□□□□ -1.27
CHD2-223	ENST00000636306	B9D2	Q9BPU9	175 aa		7.12	□□□□□ -1.27
CHD2-223	ENST00000636306	DEFB4A	O15263	64 aa		7.11	□□□□□ -1.27
CHD2-223	ENST00000636306	C10orf25	Q5T742	122 aa		7.11	□□□□□ -1.27
CHD2-223	ENST00000636306	LELP1	Q5T871	98 aa		7.11	□□□□□ -1.27
CHD2-223	ENST00000636306	LCA10	Q71F78	164 aa		7.11	□□□□□ -1.27
CHD2-223	ENST00000636306	LOC101927531	A0A1B0GV80	90 aa		7.1	□□□□□ -1.27
CHD2-223	ENST00000636306		H3BNG1	76 aa		7.1	□□□□□ -1.27
CHD2-223	ENST00000636306		A8MU10	97 aa		7.1	□□□□□ -1.27
CHD2-223	ENST00000636306	HTN3	P15516	51 aa		7.1	□□□□□ -1.27
CHD2-223	ENST00000636306	GVQW2	A0A096LPI5	108 aa	Predicted RBP	7.09	□□□□□ -1.27
CHD2-223	ENST00000636306	ANG	P03950	147 aa	Known RBP	7.09	□□□□□ -1.27
CHD2-223	ENST00000636306	C9orf116	Q5BN46	136 aa	Predicted RBP	7.09	□□□□□ -1.27
CHD2-223	ENST00000636306	SPTSSB	Q8NFR3	76 aa		7.09	□□□□□ -1.27
CHD2-223	ENST00000636306	PRR15L	Q9BU68	103 aa		7.09	□□□□□ -1.27
CHD2-223	ENST00000636306	CDC42SE1	Q9NRR8	79 aa		7.09	□□□□□ -1.27
CHD2-223	ENST00000636306	KLK12	Q9UKR0	248 aa		7.09	□□□□□ -1.27
CHD2-223	ENST00000636306	NOTCH3	Q9UM47	2321 aa		7.09	□□□□□ -1.28
CHD2-223	ENST00000636306		A0A096LPF7	62 aa		7.08	□□□□□ -1.28
CHD2-223	ENST00000636306	C11orf45	Q8TAV5	145 aa		7.08	□□□□□ -1.28
CHD2-223	ENST00000636306		H3BPC8	53 aa		7.08	□□□□□ -1.28
CHD2-223	ENST00000636306	OXLD1	Q5BKU9	147 aa		7.08	□□□□□ -1.28
CHD2-223	ENST00000636306	LINC00208	Q96KT6	92 aa		7.08	□□□□□ -1.28
CHD2-223	ENST00000636306	MP68	P56378	58 aa		7.07	□□□□□ -1.28
CHD2-223	ENST00000636306	REG3A	Q06141	175 aa		7.07	□□□□□ -1.28
CHD2-223	ENST00000636306	LINC00528	Q8N1L1	170 aa		7.07	□□□□□ -1.28
CHD2-223	ENST00000636306	CHCHD10	Q8WYQ3	142 aa	Predicted RBP	7.07	□□□□□ -1.28
CHD2-223	ENST00000636306	KCNQ1DN	Q9H478	68 aa		7.07	□□□□□ -1.28
CHD2-223	ENST00000636306	HIVEP1	P15822	2718 aa		7.07	□□□□□ -1.28
CHD2-223	ENST00000636306	CUBN	O60494	3623 aa		7.06	□□□□□ -1.28
CHD2-223	ENST00000636306	IGLV5-48	A0A075B6I7	105 aa		7.06	□□□□□ -1.28
CHD2-223	ENST00000636306	C8orf87	E5RJ46	101 aa		7.06	□□□□□ -1.28
CHD2-223	ENST00000636306	C3orf84	H3BNL1	204 aa		7.05	□□□□□ -1.28
CHD2-223	ENST00000636306	KRTAP10-11	P60412	298 aa		7.05	□□□□□ -1.28
CHD2-223	ENST00000636306	SPAG11B	Q08648	103 aa		7.05	□□□□□ -1.28
CHD2-223	ENST00000636306	CLPSL2	Q6UWE3	100 aa		7.05	□□□□□ -1.28
CHD2-223	ENST00000636306	ST20-AS1	Q8NBB2	130 aa		7.05	□□□□□ -1.28
CHD2-223	ENST00000636306	DNHD1	Q96M86	4753 aa		7.04	□□□□□ -1.28
CHD2-223	ENST00000636306		A6NED7	52 aa		7.04	□□□□□ -1.28
CHD2-223	ENST00000636306	UNQ6190/PRO20217	Q6UXQ8	127 aa		7.04	□□□□□ -1.28
CHD2-223	ENST00000636306	PRR4	Q16378	134 aa		7.03	□□□□□ -1.28
CHD2-223	ENST00000636306	KPRP	Q5T749	579 aa	Predicted RBP	7.03	□□□□□ -1.28
CHD2-223	ENST00000636306	DSCR10	P59022	87 aa		7.02	□□□□□ -1.29
CHD2-223	ENST00000636306	PRR34	Q9NV39	138 aa		7.02	□□□□□ -1.29
CHD2-223	ENST00000636306	F8	P00451	2351 aa		7	□□□□□ -1.29
CHD2-223	ENST00000636306	SPRR4	Q96PI1	79 aa		7	□□□□□ -1.29
CHD2-223	ENST00000636306	IGLV10-54	A0A075B6I4	117 aa		6.99	□□□□□ -1.29
CHD2-223	ENST00000636306		A0A1W2PNM2	257 aa		6.99	□□□□□ -1.29
CHD2-223	ENST00000636306	MOBP	Q13875	183 aa		6.99	□□□□□ -1.29
CHD2-223	ENST00000636306		Q8NBF4	154 aa		6.99	□□□□□ -1.29
CHD2-223	ENST00000636306	NIPBL	Q6KC79	2804 aa	eCLIP	6.99	□□□□□ -1.29	6e-7	■□□□□ 10.3
CHD2-223	ENST00000636306	ATR	Q13535	2644 aa		6.98	□□□□□ -1.29
CHD2-223	ENST00000636306	NKAPP1	Q8N9T2	125 aa		6.98	□□□□□ -1.29
CHD2-223	ENST00000636306	DEFB131B	A0A096LNP1	70 aa		6.97	□□□□□ -1.29
CHD2-223	ENST00000636306		Q8N377	158 aa		6.97	□□□□□ -1.29
CHD2-223	ENST00000636306	LINC01558	Q9Y6Z2	57 aa		6.97	□□□□□ -1.29

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