RNA–Protein interactions for RNA: ENST00000621897.1

BRCA1-229, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5

Gene BRCA1, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-229ENST00000621897 SNRPGP62308 76 aaKnown RBP1.42□□□□□ -2.18
BRCA1-229ENST00000621897 SERF2P84101 59 aa1.42□□□□□ -2.18
BRCA1-229ENST00000621897 RPS27LQ71UM5 84 aaKnown RBP1.42□□□□□ -2.18
BRCA1-229ENST00000621897 DDX60Q8IY21 1712 aaKnown RBP1.41□□□□□ -2.18
BRCA1-229ENST00000621897 K7EMI3 77 aa1.41□□□□□ -2.18
BRCA1-229ENST00000621897 GOLGA4Q13439 2230 aaKnown RBP1.41□□□□□ -2.18
BRCA1-229ENST00000621897 IGIPA6NJ69 53 aa1.4□□□□□ -2.19
BRCA1-229ENST00000621897 ANGP03950 147 aaKnown RBP1.4□□□□□ -2.19
BRCA1-229ENST00000621897 UBE2DNLQ8IWF7 75 aa1.4□□□□□ -2.19
BRCA1-229ENST00000621897 TOGARAM1Q9Y4F4 1720 aa1.4□□□□□ -2.19
BRCA1-229ENST00000621897 ETDCA0A1B0GVM5 59 aa1.39□□□□□ -2.19
BRCA1-229ENST00000621897 K7EIL1 84 aa1.39□□□□□ -2.19
BRCA1-229ENST00000621897 PLNP26678 52 aa1.39□□□□□ -2.19
BRCA1-229ENST00000621897 FXYD6P3P58550 94 aa1.39□□□□□ -2.19
BRCA1-229ENST00000621897 FAM208BQ5VWN6 2430 aa1.39□□□□□ -2.19
BRCA1-229ENST00000621897 JMJD1CQ15652 2540 aa1.38□□□□□ -2.19
BRCA1-229ENST00000621897 CNTRLQ7Z7A1 2325 aa1.38□□□□□ -2.19
BRCA1-229ENST00000621897 SPTY2D1-AS1A0A0U1RR47 76 aa1.38□□□□□ -2.19
BRCA1-229ENST00000621897 SMIM27A0A1W2PRY6 76 aa1.38□□□□□ -2.19
BRCA1-229ENST00000621897 M0R1W7 72 aa1.38□□□□□ -2.19
BRCA1-229ENST00000621897 CNOT1A5YKK6 2376 aaKnown RBP1.38□□□□□ -2.19
BRCA1-229ENST00000621897 LMO7Q8WWI1 1683 aa1.37□□□□□ -2.19
BRCA1-229ENST00000621897 DEFB131BA0A096LNP1 70 aa1.37□□□□□ -2.19
BRCA1-229ENST00000621897 MRPL33O75394 65 aaKnown RBP1.37□□□□□ -2.19
BRCA1-229ENST00000621897 COX6B1P14854 86 aa1.37□□□□□ -2.19
BRCA1-229ENST00000621897 TTTY10Q9BZA0 68 aa1.37□□□□□ -2.19
BRCA1-229ENST00000621897 BPTFQ12830 3046 aa1.37□□□□□ -2.19
BRCA1-229ENST00000621897 CACNA1EQ15878 2313 aa1.37□□□□□ -2.19
BRCA1-229ENST00000621897 TNRC6CQ9HCJ0 1690 aaKnown RBP1.36□□□□□ -2.19
BRCA1-229ENST00000621897 I3L3M4 83 aa1.36□□□□□ -2.19
BRCA1-229ENST00000621897 ARL14EPLP0DKL9 152 aa1.36□□□□□ -2.19
BRCA1-229ENST00000621897 DEFB119Q8N690 84 aa1.36□□□□□ -2.19
BRCA1-229ENST00000621897 DUOX1Q9NRD9 1551 aa1.36□□□□□ -2.19
BRCA1-229ENST00000621897 TIMM8BQ9Y5J9 83 aaPredicted RBP1.36□□□□□ -2.19
BRCA1-229ENST00000621897 HELZ2Q9BYK8 2649 aaKnown RBP1.36□□□□□ -2.19
BRCA1-229ENST00000621897 LINC01546A6NGU7 62 aa1.35□□□□□ -2.19
BRCA1-229ENST00000621897 I3L2K1 104 aa1.35□□□□□ -2.19
BRCA1-229ENST00000621897 SPINK4O60575 86 aa1.35□□□□□ -2.19
BRCA1-229ENST00000621897 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.35□□□□□ -2.197e-7■■■□□ 14.6
BRCA1-229ENST00000621897 LOC730098B7Z3J9 87 aa1.34□□□□□ -2.19
BRCA1-229ENST00000621897 H3BSH0 61 aa1.34□□□□□ -2.19
BRCA1-229ENST00000621897 CCL22O00626 93 aa1.34□□□□□ -2.19
BRCA1-229ENST00000621897 DEFB123Q8N688 67 aa1.34□□□□□ -2.19
BRCA1-229ENST00000621897 CRIPTQ9P021 101 aa1.33□□□□□ -2.2
BRCA1-229ENST00000621897 H0YGX0 51 aa1.32□□□□□ -2.2
BRCA1-229ENST00000621897 LYNX1P0DP58 116 aa1.32□□□□□ -2.2
BRCA1-229ENST00000621897 IAPPP10997 89 aa1.32□□□□□ -2.2
BRCA1-229ENST00000621897 DEFB106AQ8N104 65 aa1.32□□□□□ -2.2
BRCA1-229ENST00000621897 USMG5Q96IX5 58 aa1.32□□□□□ -2.2
BRCA1-229ENST00000621897 TP53AIP1Q9HCN2 124 aa1.32□□□□□ -2.2
BRCA1-229ENST00000621897 DOPEY2Q9Y3R5 2298 aa1.31□□□□□ -2.2
BRCA1-229ENST00000621897 K7EQZ3 153 aa1.31□□□□□ -2.2
BRCA1-229ENST00000621897 PIGYQ3MUY2 71 aa1.31□□□□□ -2.2
BRCA1-229ENST00000621897 COX6B2Q6YFQ2 88 aa1.31□□□□□ -2.2
BRCA1-229ENST00000621897 ARHGAP5-AS1Q96IT6 56 aa1.31□□□□□ -2.2
BRCA1-229ENST00000621897 PIEZO2Q9H5I5 2752 aa1.31□□□□□ -2.2
BRCA1-229ENST00000621897 TFF3Q07654 80 aa1.3□□□□□ -2.2
BRCA1-229ENST00000621897 CNFNQ9BYD5 112 aa1.3□□□□□ -2.2
BRCA1-229ENST00000621897 CRIP1P50238 77 aa1.29□□□□□ -2.2
BRCA1-229ENST00000621897 MRPL34Q9BQ48 92 aaKnown RBP1.29□□□□□ -2.2
BRCA1-229ENST00000621897 RPS27P42677 84 aaKnown RBP1.28□□□□□ -2.2
BRCA1-229ENST00000621897 LINC01590Q5TEZ4 76 aa1.28□□□□□ -2.2
BRCA1-229ENST00000621897 TMEM167BQ9NRX6 74 aa1.28□□□□□ -2.2
BRCA1-229ENST00000621897 COL6A6A6NMZ7 2263 aa1.28□□□□□ -2.2
BRCA1-229ENST00000621897 ALMS1Q8TCU4 4167 aa1.27□□□□□ -2.21
BRCA1-229ENST00000621897 NDUFA3O95167 84 aa1.27□□□□□ -2.21
BRCA1-229ENST00000621897 CDKN2A-AS1Q9UH64 79 aa1.27□□□□□ -2.21
BRCA1-229ENST00000621897 PLCE1Q9P212 2302 aa1.27□□□□□ -2.21
BRCA1-229ENST00000621897 PTPRZ1P23471 2315 aaPredicted RBP1.26□□□□□ -2.21
BRCA1-229ENST00000621897 LYNX1G3V0Z9 82 aa1.26□□□□□ -2.21
BRCA1-229ENST00000621897 COX6A2Q02221 97 aa1.26□□□□□ -2.21
BRCA1-229ENST00000621897 Q8IZM0 81 aa1.26□□□□□ -2.21
BRCA1-229ENST00000621897 C10orf95Q9H7T3 257 aa1.26□□□□□ -2.21
BRCA1-229ENST00000621897 LINC00158P58513 81 aa1.25□□□□□ -2.21
BRCA1-229ENST00000621897 SPINK9Q5DT21 86 aa1.25□□□□□ -2.21
BRCA1-229ENST00000621897 STATHP02808 62 aa1.24□□□□□ -2.21
BRCA1-229ENST00000621897 PDE4DIPQ5VU43 2346 aa1.24□□□□□ -2.21
BRCA1-229ENST00000621897 RP1L1Q8IWN7 2480 aaPredicted RBP1.23□□□□□ -2.21
BRCA1-229ENST00000621897 ROS1P08922 2347 aa1.23□□□□□ -2.21
BRCA1-229ENST00000621897 PTPRQQ9UMZ3 2332 aa1.22□□□□□ -2.21
BRCA1-229ENST00000621897 PRO3102Q9H379 93 aa1.22□□□□□ -2.21
BRCA1-229ENST00000621897 PRO0255Q9UI72 69 aa1.22□□□□□ -2.21
BRCA1-229ENST00000621897 C2CD3Q4AC94 2353 aa1.22□□□□□ -2.21
BRCA1-229ENST00000621897 ASH1LQ9NR48 2969 aaKnown RBP1.21□□□□□ -2.22
BRCA1-229ENST00000621897 H0YAA0 97 aa1.21□□□□□ -2.22
BRCA1-229ENST00000621897 KRTAP21-3Q3LHN1 58 aa1.21□□□□□ -2.22
BRCA1-229ENST00000621897 Q5VSD8 79 aa1.21□□□□□ -2.22
BRCA1-229ENST00000621897 LINC00308Q8TCZ7 52 aa1.2□□□□□ -2.22
BRCA1-229ENST00000621897 SMIM2Q9BVW6 85 aa1.2□□□□□ -2.22
BRCA1-229ENST00000621897 USF3Q68DE3 2245 aa1.19□□□□□ -2.22
BRCA1-229ENST00000621897 KNL1Q8NG31 2342 aa1.18□□□□□ -2.22
BRCA1-229ENST00000621897 SPRR1AP35321 89 aa1.18□□□□□ -2.22
BRCA1-229ENST00000621897 PRB3Q04118 309 aaPredicted RBP1.18□□□□□ -2.22
BRCA1-229ENST00000621897 ZNF462Q96JM2 2506 aa1.18□□□□□ -2.22
BRCA1-229ENST00000621897 MUC16Q8WXI7 14507 aa1.17□□□□□ -2.22
BRCA1-229ENST00000621897 SPTBN2O15020 2390 aa1.17□□□□□ -2.22
BRCA1-229ENST00000621897 A0A0D9SG42 100 aa1.17□□□□□ -2.22
BRCA1-229ENST00000621897 DEFB108AA8MXU0 73 aa1.17□□□□□ -2.22
BRCA1-229ENST00000621897 PRCDQ00LT1 54 aa1.17□□□□□ -2.22
BRCA1-229ENST00000621897 MINOS1Q5TGZ0 78 aa1.17□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms