RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 PPDPFQ9H3Y8 114 aa10.91□□□□□ -0.66
CCDC28A-203ENST00000617445 CBY1Q9Y3M2 126 aa10.91□□□□□ -0.66
CCDC28A-203ENST00000617445 MUC2Q02817 5179 aa10.9□□□□□ -0.66
CCDC28A-203ENST00000617445 A0A0J9YXY3 114 aa10.9□□□□□ -0.66
CCDC28A-203ENST00000617445 KRTDAPP60985 99 aa10.9□□□□□ -0.66
CCDC28A-203ENST00000617445 JOSD1Q15040 202 aaPredicted RBP10.9□□□□□ -0.66
CCDC28A-203ENST00000617445 GAGE2AQ6NT46 116 aa10.9□□□□□ -0.66
CCDC28A-203ENST00000617445 SSBP3-AS1Q7Z2R9 100 aa10.88□□□□□ -0.67
CCDC28A-203ENST00000617445 TRAV23DV6A0A075B6W5 121 aa10.87□□□□□ -0.67
CCDC28A-203ENST00000617445 C20orf202A1L168 122 aa10.87□□□□□ -0.67
CCDC28A-203ENST00000617445 ERC2-IT1O76042 136 aa10.87□□□□□ -0.67
CCDC28A-203ENST00000617445 ADAMTSL4-AS1Q5T5F5 129 aa10.87□□□□□ -0.67
CCDC28A-203ENST00000617445 Q9BRP9 147 aa10.87□□□□□ -0.67
CCDC28A-203ENST00000617445 SOSTDC1Q6X4U4 206 aa10.86□□□□□ -0.67
CCDC28A-203ENST00000617445 C5orf52A6NGY3 159 aa10.85□□□□□ -0.67
CCDC28A-203ENST00000617445 ZNF73O43830 326 aaPredicted RBP10.85□□□□□ -0.67
CCDC28A-203ENST00000617445 TIMM17BO60830 172 aa10.85□□□□□ -0.67
CCDC28A-203ENST00000617445 AKR1D1P51857 326 aa10.85□□□□□ -0.67
CCDC28A-203ENST00000617445 RPS29P62273 56 aaKnown RBP10.85□□□□□ -0.67
CCDC28A-203ENST00000617445 HINT1P49773 126 aaPredicted RBP10.84□□□□□ -0.67
CCDC28A-203ENST00000617445 NPC2P61916 151 aa10.83□□□□□ -0.68
CCDC28A-203ENST00000617445 SPANXCQ9NY87 97 aa10.83□□□□□ -0.68
CCDC28A-203ENST00000617445 IGLV9-49A0A0B4J1Y8 123 aa10.82□□□□□ -0.68
CCDC28A-203ENST00000617445 ZNF815PA8K554 130 aa10.82□□□□□ -0.68
CCDC28A-203ENST00000617445 EIF4EBP3O60516 100 aaPredicted RBP10.82□□□□□ -0.68
CCDC28A-203ENST00000617445 MOBPQ13875 183 aa10.82□□□□□ -0.68
CCDC28A-203ENST00000617445 LINC00308Q8TCZ7 52 aa10.81□□□□□ -0.68
CCDC28A-203ENST00000617445 LITAFQ99732 161 aa10.8□□□□□ -0.68
CCDC28A-203ENST00000617445 S100A2P29034 98 aa10.79□□□□□ -0.68
CCDC28A-203ENST00000617445 HIST3H2BBQ8N257 126 aa10.79□□□□□ -0.68
CCDC28A-203ENST00000617445 TTTY13Q9BZ97 58 aa10.78□□□□□ -0.68
CCDC28A-203ENST00000617445 S100A6P06703 90 aa10.77□□□□□ -0.69
CCDC28A-203ENST00000617445 KRTAP13-3Q3SY46 172 aa10.77□□□□□ -0.69
CCDC28A-203ENST00000617445 LINC00518Q8N0U6 118 aa10.77□□□□□ -0.69
CCDC28A-203ENST00000617445 HIST1H2BLQ99880 126 aa10.77□□□□□ -0.69
CCDC28A-203ENST00000617445 SPANXDQ9BXN6 97 aa10.77□□□□□ -0.69
CCDC28A-203ENST00000617445 SLC25A20O43772 301 aa10.76□□□□□ -0.69
CCDC28A-203ENST00000617445 ATOH7Q8N100 152 aa10.76□□□□□ -0.69
CCDC28A-203ENST00000617445 OR13C6PQ8NH95 151 aa10.76□□□□□ -0.69
CCDC28A-203ENST00000617445 SNRPEP62304 92 aaKnown RBP10.75□□□□□ -0.69
CCDC28A-203ENST00000617445 ANKRD39Q53RE8 183 aa10.75□□□□□ -0.69
CCDC28A-203ENST00000617445 Q8N377 158 aa10.75□□□□□ -0.69
CCDC28A-203ENST00000617445 DHRS4-AS1Q9P1J3 65 aa10.75□□□□□ -0.69
CCDC28A-203ENST00000617445 C9orf153Q5TBE3 101 aa10.74□□□□□ -0.69
CCDC28A-203ENST00000617445 SLC25A34Q6PIV7 304 aa10.74□□□□□ -0.69
CCDC28A-203ENST00000617445 SCGB1D4Q6XE38 83 aa10.73□□□□□ -0.69
CCDC28A-203ENST00000617445 COPS9Q8WXC6 57 aa10.73□□□□□ -0.69
CCDC28A-203ENST00000617445 ST20-AS1Q8NBB2 130 aa10.72□□□□□ -0.69
CCDC28A-203ENST00000617445 SPRR1BP22528 89 aa10.71□□□□□ -0.69
CCDC28A-203ENST00000617445 MUC17Q685J3 4493 aa10.71□□□□□ -0.7
CCDC28A-203ENST00000617445 ASB16-AS1Q495Z4 193 aa10.68□□□□□ -0.7
CCDC28A-203ENST00000617445 Q6ZVH6 145 aa10.68□□□□□ -0.7
CCDC28A-203ENST00000617445 PCP2Q8IVA1 136 aa10.68□□□□□ -0.7
CCDC28A-203ENST00000617445 HSBP1L1C9JCN9 74 aa10.67□□□□□ -0.7
CCDC28A-203ENST00000617445 IFITM1P13164 125 aa10.67□□□□□ -0.7
CCDC28A-203ENST00000617445 COX7BP24311 80 aa10.67□□□□□ -0.7
CCDC28A-203ENST00000617445 ELOF1P60002 83 aaKnown RBP10.67□□□□□ -0.7
CCDC28A-203ENST00000617445 LCE2AQ5TA79 106 aaPredicted RBP10.67□□□□□ -0.7
CCDC28A-203ENST00000617445 LAMTOR3Q9UHA4 124 aa10.67□□□□□ -0.7
CCDC28A-203ENST00000617445 TRBV7-6A0A0J9YX20 115 aa10.66□□□□□ -0.7
CCDC28A-203ENST00000617445 SEC61BP60468 96 aaKnown RBP10.65□□□□□ -0.7
CCDC28A-203ENST00000617445 C6orf99Q4VX62 202 aa10.65□□□□□ -0.7
CCDC28A-203ENST00000617445 LIMD2Q9BT23 127 aa10.63□□□□□ -0.71
CCDC28A-203ENST00000617445 FAT4Q6V0I7 4981 aa10.62□□□□□ -0.71
CCDC28A-203ENST00000617445 TAL2Q16559 108 aa10.61□□□□□ -0.71
CCDC28A-203ENST00000617445 A0A1B0GWB2 263 aa10.6□□□□□ -0.71
CCDC28A-203ENST00000617445 SCGB1D1O95968 90 aa10.6□□□□□ -0.71
CCDC28A-203ENST00000617445 MUSTN1Q8IVN3 82 aa10.6□□□□□ -0.71
CCDC28A-203ENST00000617445 TEX49A0A1B0GTD5 131 aa10.59□□□□□ -0.71
CCDC28A-203ENST00000617445 A6NDN8 102 aa10.58□□□□□ -0.72
CCDC28A-203ENST00000617445 CD164Q04900 197 aa10.58□□□□□ -0.72
CCDC28A-203ENST00000617445 A4D1N5 150 aa10.57□□□□□ -0.72
CCDC28A-203ENST00000617445 XP32Q5T750 250 aa10.57□□□□□ -0.72
CCDC28A-203ENST00000617445 DEFB105AQ8NG35 78 aa10.56□□□□□ -0.72
CCDC28A-203ENST00000617445 PRO1933Q9H354 126 aa10.56□□□□□ -0.72
CCDC28A-203ENST00000617445 TRAV13-2A0A0B4J235 113 aa10.55□□□□□ -0.72
CCDC28A-203ENST00000617445 Q1RN00 199 aa10.53□□□□□ -0.72
CCDC28A-203ENST00000617445 LCE2DQ5TA82 110 aaPredicted RBP10.53□□□□□ -0.72
CCDC28A-203ENST00000617445 HRCT1Q6UXD1 115 aa10.53□□□□□ -0.72
CCDC28A-203ENST00000617445 NHP2Q9NX24 153 aaKnown RBP10.53□□□□□ -0.72
CCDC28A-203ENST00000617445 IGLV5-48A0A075B6I7 105 aa10.52□□□□□ -0.73
CCDC28A-203ENST00000617445 H7C2G1 150 aa10.5□□□□□ -0.73
CCDC28A-203ENST00000617445 Q5XG85 94 aa10.5□□□□□ -0.73
CCDC28A-203ENST00000617445 SMIM29Q86T20 159 aa10.5□□□□□ -0.73
CCDC28A-203ENST00000617445 COX8AP10176 69 aa10.49□□□□□ -0.73
CCDC28A-203ENST00000617445 LINC01547P58512 204 aaPredicted RBP10.49□□□□□ -0.73
CCDC28A-203ENST00000617445 KRTAP9-2Q9BYQ4 174 aa10.48□□□□□ -0.73
CCDC28A-203ENST00000617445 DLEU1O43261 78 aa10.47□□□□□ -0.73
CCDC28A-203ENST00000617445 VAMP3Q15836 100 aa10.47□□□□□ -0.73
CCDC28A-203ENST00000617445 SMIM11BQ8TCY0 68 aa10.47□□□□□ -0.73
CCDC28A-203ENST00000617445 KRTAP4-1Q9BYQ7 146 aa10.47□□□□□ -0.73
CCDC28A-203ENST00000617445 HIST1H4GQ99525 98 aa10.44□□□□□ -0.74
CCDC28A-203ENST00000617445 SPATA45Q537H7 98 aa10.42□□□□□ -0.74
CCDC28A-203ENST00000617445 VAMP8Q9BV40 100 aa10.42□□□□□ -0.74
CCDC28A-203ENST00000617445 PAM16Q9Y3D7 125 aa10.42□□□□□ -0.74
CCDC28A-203ENST00000617445 C14orf144Q96I85 54 aa10.41□□□□□ -0.74
CCDC28A-203ENST00000617445 C9orf92A6NGG3 77 aa10.39□□□□□ -0.75
CCDC28A-203ENST00000617445 HIGD1BQ9P298 99 aa10.39□□□□□ -0.75
CCDC28A-203ENST00000617445 F8WEM9 126 aa10.38□□□□□ -0.75
CCDC28A-203ENST00000617445 C1orf195Q5TG92 126 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms