RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 TRAV23DV6A0A075B6W5 121 aa11.52□□□□□ -0.57
UPF1-212ENST00000601689 SCGB1D1O95968 90 aa11.52□□□□□ -0.57
UPF1-212ENST00000601689 SPANXDQ9BXN6 97 aa11.52□□□□□ -0.57
UPF1-212ENST00000601689 IGLV6-57P01721 117 aa11.51□□□□□ -0.57
UPF1-212ENST00000601689 IFITM1P13164 125 aa11.51□□□□□ -0.57
UPF1-212ENST00000601689 C5orf52A6NGY3 159 aa11.49□□□□□ -0.57
UPF1-212ENST00000601689 PCP2Q8IVA1 136 aa11.48□□□□□ -0.57
UPF1-212ENST00000601689 SMCR5Q8TEV8 140 aa11.48□□□□□ -0.57
UPF1-212ENST00000601689 A0A087X002 238 aa11.47□□□□□ -0.57
UPF1-212ENST00000601689 B5MCH6 92 aa11.47□□□□□ -0.57
UPF1-212ENST00000601689 KRTAP4-16G5E9R7 235 aaPredicted RBP11.47□□□□□ -0.57
UPF1-212ENST00000601689 ZNF73O43830 326 aaPredicted RBP11.47□□□□□ -0.57
UPF1-212ENST00000601689 PPDPFQ9H3Y8 114 aa11.47□□□□□ -0.57
UPF1-212ENST00000601689 ANAPC11Q9NYG5 84 aa11.47□□□□□ -0.57
UPF1-212ENST00000601689 EIF4EBP3O60516 100 aaPredicted RBP11.46□□□□□ -0.57
UPF1-212ENST00000601689 Q6ZRX8 168 aa11.45□□□□□ -0.58
UPF1-212ENST00000601689 SPRR4Q96PI1 79 aa11.45□□□□□ -0.58
UPF1-212ENST00000601689 MUSTN1Q8IVN3 82 aa11.41□□□□□ -0.58
UPF1-212ENST00000601689 A6NDN8 102 aa11.4□□□□□ -0.58
UPF1-212ENST00000601689 HMCN2Q8NDA2 5059 aa11.39□□□□□ -0.59
UPF1-212ENST00000601689 LINC00304Q8N9R0 145 aa11.39□□□□□ -0.59
UPF1-212ENST00000601689 TRAV13-2A0A0B4J235 113 aa11.38□□□□□ -0.59
UPF1-212ENST00000601689 TSPAN13O95857 204 aa11.38□□□□□ -0.59
UPF1-212ENST00000601689 KRTAP13-2Q52LG2 175 aa11.38□□□□□ -0.59
UPF1-212ENST00000601689 C4orf48Q5BLP8 95 aa11.38□□□□□ -0.59
UPF1-212ENST00000601689 GAGE2AQ6NT46 116 aa11.38□□□□□ -0.59
UPF1-212ENST00000601689 DHRS4-AS1Q9P1J3 65 aa11.37□□□□□ -0.59
UPF1-212ENST00000601689 CTAG1AP78358 180 aa11.36□□□□□ -0.59
UPF1-212ENST00000601689 Q9BRP9 147 aa11.36□□□□□ -0.59
UPF1-212ENST00000601689 SPAG11AQ6PDA7 123 aa11.35□□□□□ -0.59
UPF1-212ENST00000601689 COX7BP24311 80 aa11.34□□□□□ -0.59
UPF1-212ENST00000601689 C6orf99Q4VX62 202 aa11.34□□□□□ -0.59
UPF1-212ENST00000601689 COX8AP10176 69 aa11.33□□□□□ -0.6
UPF1-212ENST00000601689 PRR4Q16378 134 aa11.33□□□□□ -0.6
UPF1-212ENST00000601689 LINC00483Q53H64 154 aa11.33□□□□□ -0.6
UPF1-212ENST00000601689 C3orf22Q8N5N4 141 aa11.33□□□□□ -0.6
UPF1-212ENST00000601689 ERC2-IT1O76042 136 aa11.32□□□□□ -0.6
UPF1-212ENST00000601689 SLC25A34Q6PIV7 304 aa11.32□□□□□ -0.6
UPF1-212ENST00000601689 HIST1H4GQ99525 98 aa11.32□□□□□ -0.6
UPF1-212ENST00000601689 VAMP8Q9BV40 100 aa11.32□□□□□ -0.6
UPF1-212ENST00000601689 TRBV7-6A0A0J9YX20 115 aa11.31□□□□□ -0.6
UPF1-212ENST00000601689 A0A1B0GWB2 263 aa11.3□□□□□ -0.6
UPF1-212ENST00000601689 A4D1N5 150 aa11.3□□□□□ -0.6
UPF1-212ENST00000601689 DLEU1O43261 78 aa11.3□□□□□ -0.6
UPF1-212ENST00000601689 ELOF1P60002 83 aaKnown RBP11.3□□□□□ -0.6
UPF1-212ENST00000601689 PAM16Q9Y3D7 125 aa11.3□□□□□ -0.6
UPF1-212ENST00000601689 SPATA45Q537H7 98 aa11.29□□□□□ -0.6
UPF1-212ENST00000601689 IGLV9-49A0A0B4J1Y8 123 aa11.28□□□□□ -0.6
UPF1-212ENST00000601689 VAMP3Q15836 100 aa11.28□□□□□ -0.6
UPF1-212ENST00000601689 SSBP3-AS1Q7Z2R9 100 aa11.28□□□□□ -0.6
UPF1-212ENST00000601689 NHP2Q9NX24 153 aaKnown RBP11.27□□□□□ -0.61
UPF1-212ENST00000601689 SLC25A20O43772 301 aa11.25□□□□□ -0.61
UPF1-212ENST00000601689 MOBPQ13875 183 aa11.25□□□□□ -0.61
UPF1-212ENST00000601689 TAL2Q16559 108 aa11.25□□□□□ -0.61
UPF1-212ENST00000601689 C9orf153Q5TBE3 101 aa11.25□□□□□ -0.61
UPF1-212ENST00000601689 Q8NBF4 154 aa11.25□□□□□ -0.61
UPF1-212ENST00000601689 C14orf144Q96I85 54 aa11.25□□□□□ -0.61
UPF1-212ENST00000601689 SMIM11BQ8TCY0 68 aa11.23□□□□□ -0.61
UPF1-212ENST00000601689 LAMTOR3Q9UHA4 124 aa11.23□□□□□ -0.61
UPF1-212ENST00000601689 TMA7Q9Y2S6 64 aaKnown RBP11.23□□□□□ -0.61
UPF1-212ENST00000601689 SPINK1P00995 79 aa11.22□□□□□ -0.61
UPF1-212ENST00000601689 ST20-AS1Q8NBB2 130 aa11.22□□□□□ -0.61
UPF1-212ENST00000601689 HIGD1BQ9P298 99 aa11.21□□□□□ -0.61
UPF1-212ENST00000601689 DEFB105AQ8NG35 78 aa11.19□□□□□ -0.62
UPF1-212ENST00000601689 TEX49A0A1B0GTD5 131 aa11.18□□□□□ -0.62
UPF1-212ENST00000601689 SPRR1BP22528 89 aa11.18□□□□□ -0.62
UPF1-212ENST00000601689 RAB37Q96AX2 223 aa11.17□□□□□ -0.62
UPF1-212ENST00000601689 TMEM238LA0A1B0GVL6 79 aa11.16□□□□□ -0.62
UPF1-212ENST00000601689 A6NJY4 79 aa11.16□□□□□ -0.62
UPF1-212ENST00000601689 C12orf57Q99622 126 aa11.16□□□□□ -0.62
UPF1-212ENST00000601689 LRP2P98164 4655 aa11.15□□□□□ -0.62
UPF1-212ENST00000601689 BVES-AS1Q5T3Y7 98 aa11.15□□□□□ -0.62
UPF1-212ENST00000601689 SNCGO76070 127 aa11.14□□□□□ -0.63
UPF1-212ENST00000601689 RPS29P62273 56 aaKnown RBP11.14□□□□□ -0.63
UPF1-212ENST00000601689 RETNLBQ9BQ08 111 aa11.14□□□□□ -0.63
UPF1-212ENST00000601689 PYY3Q5JQD4 70 aa11.12□□□□□ -0.63
UPF1-212ENST00000601689 UBR4Q5T4S7 5183 aa11.11□□□□□ -0.63
UPF1-212ENST00000601689 hADV29S1A0JD25 119 aa11.11□□□□□ -0.63
UPF1-212ENST00000601689 IGLV7-46A0A075B6I9 117 aa11.1□□□□□ -0.63
UPF1-212ENST00000601689 Q1RN00 199 aa11.1□□□□□ -0.63
UPF1-212ENST00000601689 FP248Q71RG6 208 aaPredicted RBP11.1□□□□□ -0.63
UPF1-212ENST00000601689 CEND1Q8N111 149 aa11.1□□□□□ -0.63
UPF1-212ENST00000601689 A0A0B4J2C4 111 aa11.09□□□□□ -0.63
UPF1-212ENST00000601689 H7C2G1 150 aa11.09□□□□□ -0.63
UPF1-212ENST00000601689 LINC00575Q6W349 94 aa11.09□□□□□ -0.63
UPF1-212ENST00000601689 PRO1933Q9H354 126 aa11.09□□□□□ -0.63
UPF1-212ENST00000601689 IGLV5-48A0A075B6I7 105 aa11.08□□□□□ -0.64
UPF1-212ENST00000601689 CFC1BP0CG36 223 aa11.08□□□□□ -0.64
UPF1-212ENST00000601689 CFC1P0CG37 223 aa11.08□□□□□ -0.64
UPF1-212ENST00000601689 C2orf91Q6ZV80 131 aa11.08□□□□□ -0.64
UPF1-212ENST00000601689 F8WEM9 126 aa11.06□□□□□ -0.64
UPF1-212ENST00000601689 LIMD2Q9BT23 127 aa11.06□□□□□ -0.64
UPF1-212ENST00000601689 LPAP08519 4548 aa11.04□□□□□ -0.64
UPF1-212ENST00000601689 CDIP1Q9H305 208 aa11.04□□□□□ -0.64
UPF1-212ENST00000601689 UQCR10Q9UDW1 63 aa11.04□□□□□ -0.64
UPF1-212ENST00000601689 H0YGX0 51 aa11.03□□□□□ -0.64
UPF1-212ENST00000601689 TPRXLQ17RH7 258 aa11.03□□□□□ -0.64
UPF1-212ENST00000601689 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.03□□□□□ -0.64
UPF1-212ENST00000601689 Q6ZQY7 126 aa11.03□□□□□ -0.64
UPF1-212ENST00000601689 PRO1854Q9UHT4 67 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms