RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 C15orf56Q8N910 161 aa13.47□□□□□ -0.25
UPF1-207ENST00000599848 OBSCN-AS1Q96MR7 158 aa13.46□□□□□ -0.26
UPF1-207ENST00000599848 PSORS1C2Q9UIG4 136 aa13.46□□□□□ -0.26
UPF1-207ENST00000599848 ANKRD17O75179 2603 aaKnown RBP13.45□□□□□ -0.26
UPF1-207ENST00000599848 POLQO75417 2590 aa13.45□□□□□ -0.26
UPF1-207ENST00000599848 DSCR10P59022 87 aa13.45□□□□□ -0.26
UPF1-207ENST00000599848 PRR15Q8IV56 129 aa13.44□□□□□ -0.26
UPF1-207ENST00000599848 IGFL1Q6UW32 110 aa13.44□□□□□ -0.26
UPF1-207ENST00000599848 LINC01600Q96MT4 127 aa13.43□□□□□ -0.26
UPF1-207ENST00000599848 C9orf92A6NGG3 77 aa13.41□□□□□ -0.26
UPF1-207ENST00000599848 UQCR11O14957 56 aa13.41□□□□□ -0.26
UPF1-207ENST00000599848 CRIPTQ9P021 101 aa13.4□□□□□ -0.26
UPF1-207ENST00000599848 KRTAP10-3P60369 221 aa13.39□□□□□ -0.27
UPF1-207ENST00000599848 SPRR4Q96PI1 79 aa13.38□□□□□ -0.27
UPF1-207ENST00000599848 Q6ZSA8 131 aa13.36□□□□□ -0.27
UPF1-207ENST00000599848 K7EQZ3 153 aa13.35□□□□□ -0.27
UPF1-207ENST00000599848 CD164Q04900 197 aa13.34□□□□□ -0.27
UPF1-207ENST00000599848 CYP4F30PQ9H0H9 118 aa13.33□□□□□ -0.28
UPF1-207ENST00000599848 ACANP16112 2415 aa13.33□□□□□ -0.28
UPF1-207ENST00000599848 C9orf129Q5T035 196 aaKnown RBP13.32□□□□□ -0.28
UPF1-207ENST00000599848 LITAFQ99732 161 aa13.31□□□□□ -0.28
UPF1-207ENST00000599848 IGLV8-61A0A075B6I0 122 aa13.3□□□□□ -0.28
UPF1-207ENST00000599848 GIG44P09565 113 aaPredicted RBP13.3□□□□□ -0.28
UPF1-207ENST00000599848 RPS28P62857 69 aaKnown RBP13.29□□□□□ -0.28
UPF1-207ENST00000599848 SPINT4Q6UDR6 99 aa13.28□□□□□ -0.28
UPF1-207ENST00000599848 COA5Q86WW8 74 aa13.28□□□□□ -0.28
UPF1-207ENST00000599848 EPG5Q9HCE0 2579 aa13.27□□□□□ -0.28
UPF1-207ENST00000599848 KRTAP1-3Q8IUG1 177 aa13.27□□□□□ -0.29
UPF1-207ENST00000599848 IGLV7-46A0A075B6I9 117 aa13.26□□□□□ -0.29
UPF1-207ENST00000599848 CASC10Q5T4H9 136 aa13.26□□□□□ -0.29
UPF1-207ENST00000599848 PRO0628Q9UI54 55 aa13.26□□□□□ -0.29
UPF1-207ENST00000599848 KRTAP1-1Q07627 177 aa13.24□□□□□ -0.29
UPF1-207ENST00000599848 Q8N377 158 aa13.24□□□□□ -0.29
UPF1-207ENST00000599848 FAM229BQ4G0N7 80 aa13.24□□□□□ -0.29
UPF1-207ENST00000599848 SMCPP49901 116 aaPredicted RBP13.22□□□□□ -0.29
UPF1-207ENST00000599848 A0A1W2PNN7 141 aa13.2□□□□□ -0.3
UPF1-207ENST00000599848 PRO0461Q9UI25 63 aa13.2□□□□□ -0.3
UPF1-207ENST00000599848 M0R2T5 61 aa13.19□□□□□ -0.3
UPF1-207ENST00000599848 FLNBO75369 2602 aaKnown RBP13.18□□□□□ -0.3
UPF1-207ENST00000599848 TNP2Q05952 138 aa13.17□□□□□ -0.3
UPF1-207ENST00000599848 WIPF1O43516 503 aa13.16□□□□□ -0.3
UPF1-207ENST00000599848 MIR22HGQ0VDD5 57 aa13.15□□□□□ -0.3
UPF1-207ENST00000599848 PCSK5Q92824 1860 aa13.11□□□□□ -0.31
UPF1-207ENST00000599848 FAM104AQ969W3 186 aa13.09□□□□□ -0.31
UPF1-207ENST00000599848 A8MUN3 132 aa13.09□□□□□ -0.31
UPF1-207ENST00000599848 ANAPC11Q9NYG5 84 aa13.08□□□□□ -0.32
UPF1-207ENST00000599848 LINC01554Q52M75 96 aa13.07□□□□□ -0.32
UPF1-207ENST00000599848 SEC61BP60468 96 aaKnown RBP13.05□□□□□ -0.32
UPF1-207ENST00000599848 CDC42SE1Q9NRR8 79 aa13.04□□□□□ -0.32
UPF1-207ENST00000599848 IGLV5-48A0A075B6I7 105 aa13.03□□□□□ -0.32
UPF1-207ENST00000599848 MGAM2Q2M2H8 2515 aa13.01□□□□□ -0.33
UPF1-207ENST00000599848 HRES1P13985 223 aa13.01□□□□□ -0.33
UPF1-207ENST00000599848 SPANXA2-OT1Q8N9U9 137 aa13.01□□□□□ -0.33
UPF1-207ENST00000599848 UTRNP46939 3433 aa12.99□□□□□ -0.33
UPF1-207ENST00000599848 CAMK2N1Q7Z7J9 78 aa12.99□□□□□ -0.33
UPF1-207ENST00000599848 PLAC8Q9NZF1 115 aa12.98□□□□□ -0.33
UPF1-207ENST00000599848 PRR26Q8N8Z3 221 aa12.97□□□□□ -0.33
UPF1-207ENST00000599848 DNAH12Q6ZR08 3092 aa12.97□□□□□ -0.33
UPF1-207ENST00000599848 KLKP1Q107X0 134 aa12.97□□□□□ -0.33
UPF1-207ENST00000599848 HECTD1Q9ULT8 2610 aa12.95□□□□□ -0.34
UPF1-207ENST00000599848 LCE6AA0A183 80 aa12.94□□□□□ -0.34
UPF1-207ENST00000599848 A0A1W2PNM2 257 aa12.93□□□□□ -0.34
UPF1-207ENST00000599848 LINC00483Q53H64 154 aa12.92□□□□□ -0.34
UPF1-207ENST00000599848 CSAG1Q6PB30 78 aa12.92□□□□□ -0.34
UPF1-207ENST00000599848 Q8N1X5 172 aa12.9□□□□□ -0.34
UPF1-207ENST00000599848 CEP350Q5VT06 3117 aa12.89□□□□□ -0.35
UPF1-207ENST00000599848 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.85□□□□□ -0.35
UPF1-207ENST00000599848 A0A0D9SG42 100 aa12.84□□□□□ -0.35
UPF1-207ENST00000599848 LUZP6Q538Z0 58 aa12.83□□□□□ -0.35
UPF1-207ENST00000599848 OXTP01178 125 aa12.82□□□□□ -0.36
UPF1-207ENST00000599848 A0A0G2JQZ4 141 aa12.82□□□□□ -0.36
UPF1-207ENST00000599848 USP24Q9UPU5 2620 aa12.81□□□□□ -0.36
UPF1-207ENST00000599848 ZCCHC13Q8WW36 166 aaKnown RBP12.79□□□□□ -0.36
UPF1-207ENST00000599848 C4orf26Q17RF5 130 aa12.79□□□□□ -0.36
UPF1-207ENST00000599848 Q5VSD8 79 aa12.79□□□□□ -0.36
UPF1-207ENST00000599848 PRRC2CQ9Y520 2896 aaKnown RBP12.77□□□□□ -0.37
UPF1-207ENST00000599848 EIF4EBP3O60516 100 aaPredicted RBP12.77□□□□□ -0.37
UPF1-207ENST00000599848 S4R3F8 94 aa12.72□□□□□ -0.37
UPF1-207ENST00000599848 FP248Q71RG6 208 aaPredicted RBP12.71□□□□□ -0.37
UPF1-207ENST00000599848 A0A1B0GU33 70 aa12.67□□□□□ -0.38
UPF1-207ENST00000599848 MAST4O15021 2626 aa12.66□□□□□ -0.38
UPF1-207ENST00000599848 Q1T7F1 81 aa12.66□□□□□ -0.38
UPF1-207ENST00000599848 PCNTO95613 3336 aa12.65□□□□□ -0.38
UPF1-207ENST00000599848 SPRR1BP22528 89 aa12.64□□□□□ -0.39
UPF1-207ENST00000599848 HELZ2Q9BYK8 2649 aaKnown RBP12.63□□□□□ -0.39
UPF1-207ENST00000599848 DMAC1Q96GE9 116 aa12.62□□□□□ -0.39
UPF1-207ENST00000599848 H7BZZ5 65 aa12.61□□□□□ -0.39
UPF1-207ENST00000599848 SPRR1AP35321 89 aa12.59□□□□□ -0.39
UPF1-207ENST00000599848 R4GN34 69 aa12.57□□□□□ -0.4
UPF1-207ENST00000599848 LCA10Q71F78 164 aa12.53□□□□□ -0.4
UPF1-207ENST00000599848 STAB1Q9NY15 2570 aa12.52□□□□□ -0.4
UPF1-207ENST00000599848 ATRQ13535 2644 aa12.52□□□□□ -0.4
UPF1-207ENST00000599848 SPINK7P58062 85 aa12.5□□□□□ -0.41
UPF1-207ENST00000599848 OCR1Q9BZK8 76 aa12.48□□□□□ -0.41
UPF1-207ENST00000599848 MMP24-AS1A0A0U1RRL7 71 aa12.47□□□□□ -0.41
UPF1-207ENST00000599848 KTN1-AS1Q86SY8 53 aa12.47□□□□□ -0.41
UPF1-207ENST00000599848 FLNAP21333 2647 aaKnown RBP12.45□□□□□ -0.42
UPF1-207ENST00000599848 PLAC4Q8WY50 150 aa12.44□□□□□ -0.42
UPF1-207ENST00000599848 KRTAP10-1P60331 282 aa12.43□□□□□ -0.42
UPF1-207ENST00000599848 KRTAP21-3Q3LHN1 58 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 92.8 ms