RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 HIGD1BQ9P298 99 aa11□□□□□ -0.65
LIG1-216ENST00000598938 KRTAP4-16G5E9R7 235 aaPredicted RBP10.99□□□□□ -0.65
LIG1-216ENST00000598938 MT1HL1P0DM35 61 aa10.99□□□□□ -0.65
LIG1-216ENST00000598938 S100A12P80511 92 aa10.99□□□□□ -0.65
LIG1-216ENST00000598938 C2orf91Q6ZV80 131 aa10.99□□□□□ -0.65
LIG1-216ENST00000598938 FAM19A1Q7Z5A9 133 aa10.99□□□□□ -0.65
LIG1-216ENST00000598938 LINC00337Q8N6G1 96 aa10.99□□□□□ -0.65
LIG1-216ENST00000598938 HIST1H4GQ99525 98 aa10.98□□□□□ -0.65
LIG1-216ENST00000598938 TRAV23DV6A0A075B6W5 121 aa10.97□□□□□ -0.65
LIG1-216ENST00000598938 PRLHP81277 87 aa10.97□□□□□ -0.65
LIG1-216ENST00000598938 OR13C6PQ8NH95 151 aa10.97□□□□□ -0.65
LIG1-216ENST00000598938 CBY1Q9Y3M2 126 aa10.96□□□□□ -0.65
LIG1-216ENST00000598938 TNXBP22105 4242 aa10.94□□□□□ -0.66
LIG1-216ENST00000598938 ETDCA0A1B0GVM5 59 aa10.94□□□□□ -0.66
LIG1-216ENST00000598938 A4D1N5 150 aa10.94□□□□□ -0.66
LIG1-216ENST00000598938 LRP2P98164 4655 aa10.93□□□□□ -0.66
LIG1-216ENST00000598938 RNF213Q63HN8 5207 aa10.93□□□□□ -0.66
LIG1-216ENST00000598938 LOC105371267A0A1B0GV96 52 aa10.93□□□□□ -0.66
LIG1-216ENST00000598938 LINC01600Q96MT4 127 aa10.93□□□□□ -0.66
LIG1-216ENST00000598938 B5MCH6 92 aa10.92□□□□□ -0.66
LIG1-216ENST00000598938 ZNF73O43830 326 aaPredicted RBP10.92□□□□□ -0.66
LIG1-216ENST00000598938 SMIM6P0DI80 62 aa10.92□□□□□ -0.66
LIG1-216ENST00000598938 TRAV13-2A0A0B4J235 113 aa10.91□□□□□ -0.66
LIG1-216ENST00000598938 KRTAP1-4P0C5Y4 121 aa10.91□□□□□ -0.66
LIG1-216ENST00000598938 A6NDN8 102 aa10.9□□□□□ -0.66
LIG1-216ENST00000598938 TAL2Q16559 108 aa10.9□□□□□ -0.66
LIG1-216ENST00000598938 HIGD2AQ9BW72 106 aa10.89□□□□□ -0.67
LIG1-216ENST00000598938 UQCR10Q9UDW1 63 aa10.89□□□□□ -0.67
LIG1-216ENST00000598938 Q6ZRX8 168 aa10.88□□□□□ -0.67
LIG1-216ENST00000598938 SMCR5Q8TEV8 140 aa10.87□□□□□ -0.67
LIG1-216ENST00000598938 CEND1Q8N111 149 aa10.86□□□□□ -0.67
LIG1-216ENST00000598938 Q9BRP9 147 aa10.86□□□□□ -0.67
LIG1-216ENST00000598938 HINT1P49773 126 aaPredicted RBP10.85□□□□□ -0.67
LIG1-216ENST00000598938 KRTAP10-8P60410 259 aa10.85□□□□□ -0.67
LIG1-216ENST00000598938 C6orf99Q4VX62 202 aa10.85□□□□□ -0.67
LIG1-216ENST00000598938 C12orf57Q99622 126 aa10.85□□□□□ -0.67
LIG1-216ENST00000598938 TRBV7-6A0A0J9YX20 115 aa10.83□□□□□ -0.68
LIG1-216ENST00000598938 HSD52Q0P140 79 aa10.83□□□□□ -0.68
LIG1-216ENST00000598938 SMIM11BQ8TCY0 68 aa10.83□□□□□ -0.68
LIG1-216ENST00000598938 CFC1BP0CG36 223 aa10.82□□□□□ -0.68
LIG1-216ENST00000598938 CFC1P0CG37 223 aa10.82□□□□□ -0.68
LIG1-216ENST00000598938 ELOF1P60002 83 aaKnown RBP10.82□□□□□ -0.68
LIG1-216ENST00000598938 PRR26Q8N8Z3 221 aa10.82□□□□□ -0.68
LIG1-216ENST00000598938 ERC2-IT1O76042 136 aa10.81□□□□□ -0.68
LIG1-216ENST00000598938 COX7BP24311 80 aa10.81□□□□□ -0.68
LIG1-216ENST00000598938 RPL13AP40429 203 aaKnown RBP10.81□□□□□ -0.68
LIG1-216ENST00000598938 FXYD2P54710 66 aa10.81□□□□□ -0.68
LIG1-216ENST00000598938 PRO1933Q9H354 126 aa10.81□□□□□ -0.68
LIG1-216ENST00000598938 A0A0B4J2C4 111 aa10.8□□□□□ -0.68
LIG1-216ENST00000598938 TMEM238LA0A1B0GVL6 79 aa10.8□□□□□ -0.68
LIG1-216ENST00000598938 A6NJY4 79 aa10.8□□□□□ -0.68
LIG1-216ENST00000598938 SPRR4Q96PI1 79 aa10.8□□□□□ -0.68
LIG1-216ENST00000598938 ZNF706Q9Y5V0 76 aaPredicted RBP10.8□□□□□ -0.68
LIG1-216ENST00000598938 FAM229BQ4G0N7 80 aa10.79□□□□□ -0.68
LIG1-216ENST00000598938 ANAPC11Q9NYG5 84 aa10.79□□□□□ -0.68
LIG1-216ENST00000598938 A0A087X002 238 aa10.78□□□□□ -0.68
LIG1-216ENST00000598938 A0A1B0GWB2 263 aa10.78□□□□□ -0.68
LIG1-216ENST00000598938 DHRS4-AS1Q9P1J3 65 aa10.78□□□□□ -0.68
LIG1-216ENST00000598938 RAB37Q96AX2 223 aa10.77□□□□□ -0.69
LIG1-216ENST00000598938 CRYGAP11844 174 aa10.76□□□□□ -0.69
LIG1-216ENST00000598938 LINC00483Q53H64 154 aa10.74□□□□□ -0.69
LIG1-216ENST00000598938 KRTAP13-2Q52LG2 175 aa10.73□□□□□ -0.69
LIG1-216ENST00000598938 VAMP3Q15836 100 aa10.72□□□□□ -0.69
LIG1-216ENST00000598938 PRO1854Q9UHT4 67 aa10.72□□□□□ -0.69
LIG1-216ENST00000598938 H7C2G1 150 aa10.71□□□□□ -0.69
LIG1-216ENST00000598938 ST20-AS1Q8NBB2 130 aa10.71□□□□□ -0.69
LIG1-216ENST00000598938 NHP2Q9NX24 153 aaKnown RBP10.71□□□□□ -0.69
LIG1-216ENST00000598938 BVES-AS1Q5T3Y7 98 aa10.7□□□□□ -0.7
LIG1-216ENST00000598938 GAGE2AQ6NT46 116 aa10.7□□□□□ -0.7
LIG1-216ENST00000598938 TSTD3H0UI37 97 aa10.69□□□□□ -0.7
LIG1-216ENST00000598938 TYMSOSQ8TAI1 123 aa10.69□□□□□ -0.7
LIG1-216ENST00000598938 CTAG1AP78358 180 aa10.68□□□□□ -0.7
LIG1-216ENST00000598938 LINC00575Q6W349 94 aa10.67□□□□□ -0.7
LIG1-216ENST00000598938 C3orf22Q8N5N4 141 aa10.67□□□□□ -0.7
LIG1-216ENST00000598938 K7ERJ3 54 aa10.66□□□□□ -0.7
LIG1-216ENST00000598938 SPRR1BP22528 89 aa10.65□□□□□ -0.7
LIG1-216ENST00000598938 Q1RN00 199 aa10.65□□□□□ -0.7
LIG1-216ENST00000598938 SLC25A20O43772 301 aa10.64□□□□□ -0.71
LIG1-216ENST00000598938 IGLV5-48A0A075B6I7 105 aa10.62□□□□□ -0.71
LIG1-216ENST00000598938 hADV29S1A0JD25 119 aa10.62□□□□□ -0.71
LIG1-216ENST00000598938 M0R143 59 aa10.62□□□□□ -0.71
LIG1-216ENST00000598938 LINC01547P58512 204 aaPredicted RBP10.62□□□□□ -0.71
LIG1-216ENST00000598938 H0YGX0 51 aa10.61□□□□□ -0.71
LIG1-216ENST00000598938 TRIAP1O43715 76 aa10.6□□□□□ -0.71
LIG1-216ENST00000598938 TSPAN13O95857 204 aa10.6□□□□□ -0.71
LIG1-216ENST00000598938 TEX49A0A1B0GTD5 131 aa10.59□□□□□ -0.71
LIG1-216ENST00000598938 DEFB105AQ8NG35 78 aa10.59□□□□□ -0.71
LIG1-216ENST00000598938 IGLV9-49A0A0B4J1Y8 123 aa10.58□□□□□ -0.72
LIG1-216ENST00000598938 MOBPQ13875 183 aa10.57□□□□□ -0.72
LIG1-216ENST00000598938 Q6ZQY7 126 aa10.57□□□□□ -0.72
LIG1-216ENST00000598938 LINC00304Q8N9R0 145 aa10.57□□□□□ -0.72
LIG1-216ENST00000598938 FAM218AQ96MZ4 157 aa10.57□□□□□ -0.72
LIG1-216ENST00000598938 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.56□□□□□ -0.72
LIG1-216ENST00000598938 Q8N377 158 aa10.56□□□□□ -0.72
LIG1-216ENST00000598938 PSMB2P49721 201 aa10.55□□□□□ -0.72
LIG1-216ENST00000598938 SSBP3-AS1Q7Z2R9 100 aa10.55□□□□□ -0.72
LIG1-216ENST00000598938 SMIM29Q86T20 159 aa10.55□□□□□ -0.72
LIG1-216ENST00000598938 LAMTOR3Q9UHA4 124 aa10.55□□□□□ -0.72
LIG1-216ENST00000598938 Q8NBF4 154 aa10.54□□□□□ -0.72
LIG1-216ENST00000598938 A0A1B0GX51 115 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms