RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 INAFM2P0DMQ5 153 aa6.44□□□□□ -1.38
LIG1-210ENST00000596332 RPL24P83731 157 aaKnown RBP6.44□□□□□ -1.38
LIG1-210ENST00000596332 KRTAP13-1Q8IUC0 172 aa6.44□□□□□ -1.38
LIG1-210ENST00000596332 PPDPFQ9H3Y8 114 aa6.44□□□□□ -1.38
LIG1-210ENST00000596332 FLG2Q5D862 2391 aaPredicted RBP6.43□□□□□ -1.38
LIG1-210ENST00000596332 KRTAP4-16G5E9R7 235 aaPredicted RBP6.43□□□□□ -1.38
LIG1-210ENST00000596332 IGLV7-43P04211 117 aa6.43□□□□□ -1.38
LIG1-210ENST00000596332 C1orf137Q5JT78 98 aa6.43□□□□□ -1.38
LIG1-210ENST00000596332 MUSTN1Q8IVN3 82 aa6.43□□□□□ -1.38
LIG1-210ENST00000596332 NKAPP1Q8N9T2 125 aa6.43□□□□□ -1.38
LIG1-210ENST00000596332 SPANXB1Q9NS25 103 aaPredicted RBP6.43□□□□□ -1.38
LIG1-210ENST00000596332 TRBV10-3A0A0K0K1G6 114 aa6.42□□□□□ -1.38
LIG1-210ENST00000596332 TRBV10-2A0A0K0K1G8 114 aa6.42□□□□□ -1.38
LIG1-210ENST00000596332 TMEM238C9JI98 176 aa6.42□□□□□ -1.38
LIG1-210ENST00000596332 K7EP34 96 aa6.42□□□□□ -1.38
LIG1-210ENST00000596332 NCR3O14931 201 aa6.42□□□□□ -1.38
LIG1-210ENST00000596332 IGLV6-57P01721 117 aa6.42□□□□□ -1.38
LIG1-210ENST00000596332 FABP2P12104 132 aa6.42□□□□□ -1.38
LIG1-210ENST00000596332 OCIAD2Q56VL3 154 aa6.42□□□□□ -1.38
LIG1-210ENST00000596332 SCGB1D4Q6XE38 83 aa6.42□□□□□ -1.38
LIG1-210ENST00000596332 Q6ZVH6 145 aa6.42□□□□□ -1.38
LIG1-210ENST00000596332 SPRR1AP35321 89 aa6.41□□□□□ -1.38
LIG1-210ENST00000596332 UBE2BP63146 152 aa6.41□□□□□ -1.38
LIG1-210ENST00000596332 KCNQ1DNQ9H478 68 aa6.41□□□□□ -1.38
LIG1-210ENST00000596332 A0A1W2PPM0 123 aa6.4□□□□□ -1.38
LIG1-210ENST00000596332 IFITM1P13164 125 aa6.4□□□□□ -1.38
LIG1-210ENST00000596332 PCP4P48539 62 aa6.4□□□□□ -1.38
LIG1-210ENST00000596332 LINC00337Q8N6G1 96 aa6.4□□□□□ -1.38
LIG1-210ENST00000596332 TMEM126AQ9H061 195 aa6.4□□□□□ -1.38
LIG1-210ENST00000596332 H3BUT2 72 aa6.39□□□□□ -1.39
LIG1-210ENST00000596332 BCE1O60756 84 aa6.39□□□□□ -1.39
LIG1-210ENST00000596332 CEND1Q8N111 149 aa6.39□□□□□ -1.39
LIG1-210ENST00000596332 ZNF861PO60384 105 aa6.38□□□□□ -1.39
LIG1-210ENST00000596332 REG3GQ6UW15 175 aa6.38□□□□□ -1.39
LIG1-210ENST00000596332 SPINK6Q6UWN8 80 aa6.38□□□□□ -1.39
LIG1-210ENST00000596332 VPS25Q9BRG1 176 aa6.38□□□□□ -1.39
LIG1-210ENST00000596332 SPCS1Q9Y6A9 102 aa6.38□□□□□ -1.39
LIG1-210ENST00000596332 KRTAP1-4P0C5Y4 121 aa6.37□□□□□ -1.39
LIG1-210ENST00000596332 MT1HL1P0DM35 61 aa6.37□□□□□ -1.39
LIG1-210ENST00000596332 J3QR89 54 aa6.36□□□□□ -1.39
LIG1-210ENST00000596332 LORP23490 312 aaPredicted RBP6.36□□□□□ -1.39
LIG1-210ENST00000596332 A4D1N5 150 aa6.35□□□□□ -1.39
LIG1-210ENST00000596332 KRTAP29-1A8MX34 341 aaPredicted RBP6.35□□□□□ -1.39
LIG1-210ENST00000596332 H0Y9J4 135 aa6.35□□□□□ -1.39
LIG1-210ENST00000596332 PRYO14603 147 aa6.35□□□□□ -1.39
LIG1-210ENST00000596332 LYRM7Q5U5X0 104 aa6.35□□□□□ -1.39
LIG1-210ENST00000596332 RAB37Q96AX2 223 aa6.35□□□□□ -1.39
LIG1-210ENST00000596332 HIST1H4GQ99525 98 aa6.35□□□□□ -1.39
LIG1-210ENST00000596332 B5MCH6 92 aa6.34□□□□□ -1.39
LIG1-210ENST00000596332 F8W1H4 67 aa6.34□□□□□ -1.39
LIG1-210ENST00000596332 FXYD2P54710 66 aa6.34□□□□□ -1.39
LIG1-210ENST00000596332 PRLHP81277 87 aa6.34□□□□□ -1.39
LIG1-210ENST00000596332 TNXBP22105 4242 aa6.33□□□□□ -1.4
LIG1-210ENST00000596332 A0A1B0GWB2 263 aa6.33□□□□□ -1.4
LIG1-210ENST00000596332 KRTAP10-8P60410 259 aa6.33□□□□□ -1.4
LIG1-210ENST00000596332 LINC01600Q96MT4 127 aa6.33□□□□□ -1.4
LIG1-210ENST00000596332 NHP2Q9NX24 153 aaKnown RBP6.33□□□□□ -1.4
LIG1-210ENST00000596332 OXTP01178 125 aa6.32□□□□□ -1.4
LIG1-210ENST00000596332 FAM19A1Q7Z5A9 133 aa6.32□□□□□ -1.4
LIG1-210ENST00000596332 SMCR5Q8TEV8 140 aa6.32□□□□□ -1.4
LIG1-210ENST00000596332 Q9BRP9 147 aa6.32□□□□□ -1.4
LIG1-210ENST00000596332 TRAV23DV6A0A075B6W5 121 aa6.31□□□□□ -1.4
LIG1-210ENST00000596332 ZNF73O43830 326 aaPredicted RBP6.31□□□□□ -1.4
LIG1-210ENST00000596332 ERC2-IT1O76042 136 aa6.31□□□□□ -1.4
LIG1-210ENST00000596332 CFC1BP0CG36 223 aa6.31□□□□□ -1.4
LIG1-210ENST00000596332 CFC1P0CG37 223 aa6.31□□□□□ -1.4
LIG1-210ENST00000596332 RPL28P46779 137 aaKnown RBP6.31□□□□□ -1.4
LIG1-210ENST00000596332 S100A7L2Q5SY68 101 aa6.31□□□□□ -1.4
LIG1-210ENST00000596332 DIRC1Q969H9 104 aa6.31□□□□□ -1.4
LIG1-210ENST00000596332 OR13C6PQ8NH95 151 aa6.3□□□□□ -1.4
LIG1-210ENST00000596332 COPS9Q8WXC6 57 aa6.3□□□□□ -1.4
LIG1-210ENST00000596332 HERC1Q15751 4861 aa6.3□□□□□ -1.4
LIG1-210ENST00000596332 UBE2AP49459 152 aa6.29□□□□□ -1.4
LIG1-210ENST00000596332 Q6ZRX8 168 aa6.29□□□□□ -1.4
LIG1-210ENST00000596332 SMIM11BQ8TCY0 68 aa6.29□□□□□ -1.4
LIG1-210ENST00000596332 ANAPC11Q9NYG5 84 aa6.29□□□□□ -1.4
LIG1-210ENST00000596332 NAA38Q9BRA0 125 aaKnown RBP6.28□□□□□ -1.4
LIG1-210ENST00000596332 A0A087X002 238 aa6.27□□□□□ -1.41
LIG1-210ENST00000596332 TRAV13-2A0A0B4J235 113 aa6.27□□□□□ -1.41
LIG1-210ENST00000596332 K7ERJ3 54 aa6.27□□□□□ -1.41
LIG1-210ENST00000596332 SCGB1A1P11684 91 aa6.27□□□□□ -1.41
LIG1-210ENST00000596332 ELOF1P60002 83 aaKnown RBP6.27□□□□□ -1.41
LIG1-210ENST00000596332 C6orf99Q4VX62 202 aa6.27□□□□□ -1.41
LIG1-210ENST00000596332 TRBV20-1A0A075B6N2 111 aa6.26□□□□□ -1.41
LIG1-210ENST00000596332 ETDCA0A1B0GVM5 59 aa6.26□□□□□ -1.41
LIG1-210ENST00000596332 C21orf62-AS1Q17RA5 79 aa6.26□□□□□ -1.41
LIG1-210ENST00000596332 KRTAP13-2Q52LG2 175 aa6.26□□□□□ -1.41
LIG1-210ENST00000596332 PRR26Q8N8Z3 221 aa6.26□□□□□ -1.41
LIG1-210ENST00000596332 HIGD2AQ9BW72 106 aa6.26□□□□□ -1.41
LIG1-210ENST00000596332 DMBT1Q9UGM3 2413 aaPredicted RBP6.25□□□□□ -1.41
LIG1-210ENST00000596332 A0A0B4J2C4 111 aa6.25□□□□□ -1.41
LIG1-210ENST00000596332 TRBV7-6A0A0J9YX20 115 aa6.25□□□□□ -1.41
LIG1-210ENST00000596332 SPRR4Q96PI1 79 aa6.25□□□□□ -1.41
LIG1-210ENST00000596332 H3BMG7 143 aa6.23□□□□□ -1.41
LIG1-210ENST00000596332 COX7BP24311 80 aa6.23□□□□□ -1.41
LIG1-210ENST00000596332 RPL13AP40429 203 aaKnown RBP6.23□□□□□ -1.41
LIG1-210ENST00000596332 LINC00483Q53H64 154 aa6.23□□□□□ -1.41
LIG1-210ENST00000596332 ST20-AS1Q8NBB2 130 aa6.23□□□□□ -1.41
LIG1-210ENST00000596332 SIGMAR1Q99720 223 aa6.23□□□□□ -1.41
LIG1-210ENST00000596332 LINC01547P58512 204 aaPredicted RBP6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms