RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 S100A1P23297 94 aa10.33□□□□□ -0.76
SHKBP1-204ENST00000594862 NPC2P61916 151 aa10.33□□□□□ -0.76
SHKBP1-204ENST00000594862 LINC00308Q8TCZ7 52 aa10.33□□□□□ -0.76
SHKBP1-204ENST00000594862 LITAFQ99732 161 aa10.33□□□□□ -0.76
SHKBP1-204ENST00000594862 HINT1P49773 126 aaPredicted RBP10.32□□□□□ -0.76
SHKBP1-204ENST00000594862 COPS9Q8WXC6 57 aa10.32□□□□□ -0.76
SHKBP1-204ENST00000594862 LINC00483Q53H64 154 aa10.31□□□□□ -0.76
SHKBP1-204ENST00000594862 LPAP08519 4548 aa10.31□□□□□ -0.76
SHKBP1-204ENST00000594862 ZNF73O43830 326 aaPredicted RBP10.3□□□□□ -0.76
SHKBP1-204ENST00000594862 C3orf22Q8N5N4 141 aa10.3□□□□□ -0.76
SHKBP1-204ENST00000594862 SNRPEP62304 92 aaKnown RBP10.29□□□□□ -0.76
SHKBP1-204ENST00000594862 C4orf48Q5BLP8 95 aa10.29□□□□□ -0.76
SHKBP1-204ENST00000594862 SCGB1D4Q6XE38 83 aa10.29□□□□□ -0.76
SHKBP1-204ENST00000594862 LINC00518Q8N0U6 118 aa10.29□□□□□ -0.76
SHKBP1-204ENST00000594862 SPANXDQ9BXN6 97 aa10.29□□□□□ -0.76
SHKBP1-204ENST00000594862 EIF4EBP3O60516 100 aaPredicted RBP10.28□□□□□ -0.76
SHKBP1-204ENST00000594862 C5orf52A6NGY3 159 aa10.27□□□□□ -0.77
SHKBP1-204ENST00000594862 PPDPFQ9H3Y8 114 aa10.27□□□□□ -0.77
SHKBP1-204ENST00000594862 GAGE2AQ6NT46 116 aa10.26□□□□□ -0.77
SHKBP1-204ENST00000594862 Q6ZVH6 145 aa10.26□□□□□ -0.77
SHKBP1-204ENST00000594862 OR13C6PQ8NH95 151 aa10.26□□□□□ -0.77
SHKBP1-204ENST00000594862 Q9BRP9 147 aa10.26□□□□□ -0.77
SHKBP1-204ENST00000594862 S100A2P29034 98 aa10.25□□□□□ -0.77
SHKBP1-204ENST00000594862 TTTY13Q9BZ97 58 aa10.25□□□□□ -0.77
SHKBP1-204ENST00000594862 IFITM1P13164 125 aa10.24□□□□□ -0.77
SHKBP1-204ENST00000594862 ANKRD39Q53RE8 183 aa10.24□□□□□ -0.77
SHKBP1-204ENST00000594862 ERC2-IT1O76042 136 aa10.23□□□□□ -0.77
SHKBP1-204ENST00000594862 Q8NBF4 154 aa10.23□□□□□ -0.77
SHKBP1-204ENST00000594862 SPINK1P00995 79 aa10.22□□□□□ -0.77
SHKBP1-204ENST00000594862 ATOH7Q8N100 152 aa10.22□□□□□ -0.77
SHKBP1-204ENST00000594862 S100A6P06703 90 aa10.21□□□□□ -0.77
SHKBP1-204ENST00000594862 SSBP3-AS1Q7Z2R9 100 aa10.21□□□□□ -0.77
SHKBP1-204ENST00000594862 HIST3H2BBQ8N257 126 aa10.21□□□□□ -0.77
SHKBP1-204ENST00000594862 DHRS4-AS1Q9P1J3 65 aa10.21□□□□□ -0.77
SHKBP1-204ENST00000594862 HIST1H2BLQ99880 126 aa10.2□□□□□ -0.78
SHKBP1-204ENST00000594862 RETNLBQ9BQ08 111 aa10.2□□□□□ -0.78
SHKBP1-204ENST00000594862 HSBP1L1C9JCN9 74 aa10.19□□□□□ -0.78
SHKBP1-204ENST00000594862 MOBPQ13875 183 aa10.19□□□□□ -0.78
SHKBP1-204ENST00000594862 FP248Q71RG6 208 aaPredicted RBP10.19□□□□□ -0.78
SHKBP1-204ENST00000594862 IGLV7-46A0A075B6I9 117 aa10.18□□□□□ -0.78
SHKBP1-204ENST00000594862 IGLV9-49A0A0B4J1Y8 123 aa10.18□□□□□ -0.78
SHKBP1-204ENST00000594862 RPS29P62273 56 aaKnown RBP10.18□□□□□ -0.78
SHKBP1-204ENST00000594862 TPRXLQ17RH7 258 aa10.18□□□□□ -0.78
SHKBP1-204ENST00000594862 SLC25A34Q6PIV7 304 aa10.18□□□□□ -0.78
SHKBP1-204ENST00000594862 TRBV7-6A0A0J9YX20 115 aa10.16□□□□□ -0.78
SHKBP1-204ENST00000594862 COX7BP24311 80 aa10.16□□□□□ -0.78
SHKBP1-204ENST00000594862 ELOF1P60002 83 aaKnown RBP10.16□□□□□ -0.78
SHKBP1-204ENST00000594862 PCP2Q8IVA1 136 aa10.16□□□□□ -0.78
SHKBP1-204ENST00000594862 C6orf99Q4VX62 202 aa10.15□□□□□ -0.78
SHKBP1-204ENST00000594862 C9orf153Q5TBE3 101 aa10.14□□□□□ -0.79
SHKBP1-204ENST00000594862 MUC2Q02817 5179 aa10.13□□□□□ -0.79
SHKBP1-204ENST00000594862 SPRR1BP22528 89 aa10.13□□□□□ -0.79
SHKBP1-204ENST00000594862 CDIP1Q9H305 208 aa10.13□□□□□ -0.79
SHKBP1-204ENST00000594862 A6NDN8 102 aa10.12□□□□□ -0.79
SHKBP1-204ENST00000594862 MUSTN1Q8IVN3 82 aa10.12□□□□□ -0.79
SHKBP1-204ENST00000594862 TRAV13-2A0A0B4J235 113 aa10.11□□□□□ -0.79
SHKBP1-204ENST00000594862 A0A1B0GWB2 263 aa10.11□□□□□ -0.79
SHKBP1-204ENST00000594862 ST20-AS1Q8NBB2 130 aa10.11□□□□□ -0.79
SHKBP1-204ENST00000594862 A4D1N5 150 aa10.1□□□□□ -0.79
SHKBP1-204ENST00000594862 LAMTOR3Q9UHA4 124 aa10.09□□□□□ -0.79
SHKBP1-204ENST00000594862 SLC25A20O43772 301 aa10.08□□□□□ -0.8
SHKBP1-204ENST00000594862 NHP2Q9NX24 153 aaKnown RBP10.08□□□□□ -0.8
SHKBP1-204ENST00000594862 A0A0U1RQV1 116 aa10.07□□□□□ -0.8
SHKBP1-204ENST00000594862 SCGB1D1O95968 90 aa10.05□□□□□ -0.8
SHKBP1-204ENST00000594862 TAL2Q16559 108 aa10.05□□□□□ -0.8
SHKBP1-204ENST00000594862 TEX49A0A1B0GTD5 131 aa10.04□□□□□ -0.8
SHKBP1-204ENST00000594862 Q8N377 158 aa10.04□□□□□ -0.8
SHKBP1-204ENST00000594862 LIMD2Q9BT23 127 aa10.03□□□□□ -0.8
SHKBP1-204ENST00000594862 VAMP3Q15836 100 aa10.02□□□□□ -0.81
SHKBP1-204ENST00000594862 SMIM11BQ8TCY0 68 aa10.01□□□□□ -0.81
SHKBP1-204ENST00000594862 IGLV5-48A0A075B6I7 105 aa10□□□□□ -0.81
SHKBP1-204ENST00000594862 KRTAP13-3Q3SY46 172 aa10□□□□□ -0.81
SHKBP1-204ENST00000594862 DEFB105AQ8NG35 78 aa9.99□□□□□ -0.81
SHKBP1-204ENST00000594862 PRO1933Q9H354 126 aa9.99□□□□□ -0.81
SHKBP1-204ENST00000594862 COX8AP10176 69 aa9.98□□□□□ -0.81
SHKBP1-204ENST00000594862 CD164Q04900 197 aa9.98□□□□□ -0.81
SHKBP1-204ENST00000594862 DLEU1O43261 78 aa9.97□□□□□ -0.81
SHKBP1-204ENST00000594862 Q1RN00 199 aa9.97□□□□□ -0.81
SHKBP1-204ENST00000594862 HIST1H4GQ99525 98 aa9.97□□□□□ -0.81
SHKBP1-204ENST00000594862 KRTAP9-2Q9BYQ4 174 aa9.96□□□□□ -0.82
SHKBP1-204ENST00000594862 LINC01547P58512 204 aaPredicted RBP9.93□□□□□ -0.82
SHKBP1-204ENST00000594862 H7C2G1 150 aa9.92□□□□□ -0.82
SHKBP1-204ENST00000594862 BVES-AS1Q5T3Y7 98 aa9.91□□□□□ -0.82
SHKBP1-204ENST00000594862 LINC00575Q6W349 94 aa9.91□□□□□ -0.82
SHKBP1-204ENST00000594862 SMIM29Q86T20 159 aa9.91□□□□□ -0.82
SHKBP1-204ENST00000594862 F8WEM9 126 aa9.9□□□□□ -0.82
SHKBP1-204ENST00000594862 HRCT1Q6UXD1 115 aa9.9□□□□□ -0.82
SHKBP1-204ENST00000594862 VAMP8Q9BV40 100 aa9.9□□□□□ -0.82
SHKBP1-204ENST00000594862 hADV29S1A0JD25 119 aa9.89□□□□□ -0.83
SHKBP1-204ENST00000594862 SEC61BP60468 96 aaKnown RBP9.89□□□□□ -0.83
SHKBP1-204ENST00000594862 HIGD1BQ9P298 99 aa9.89□□□□□ -0.83
SHKBP1-204ENST00000594862 ASB16-AS1Q495Z4 193 aa9.88□□□□□ -0.83
SHKBP1-204ENST00000594862 SPATA45Q537H7 98 aa9.88□□□□□ -0.83
SHKBP1-204ENST00000594862 Q5XG85 94 aa9.88□□□□□ -0.83
SHKBP1-204ENST00000594862 PAM16Q9Y3D7 125 aa9.88□□□□□ -0.83
SHKBP1-204ENST00000594862 LCE2AQ5TA79 106 aaPredicted RBP9.87□□□□□ -0.83
SHKBP1-204ENST00000594862 PPDPFLQ8WWR9 84 aa9.86□□□□□ -0.83
SHKBP1-204ENST00000594862 C14orf144Q96I85 54 aa9.86□□□□□ -0.83
SHKBP1-204ENST00000594862 C12orf57Q99622 126 aa9.86□□□□□ -0.83
SHKBP1-204ENST00000594862 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms