RNA–Protein interactions for RNA: ENST00000594828.7

LSM4-204, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 807 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-204ENST00000594828 Q6ZRX8 168 aa13.42□□□□□ -0.26
LSM4-204ENST00000594828 Q9BRP9 147 aa13.41□□□□□ -0.26
LSM4-204ENST00000594828 EIF4EBP3O60516 100 aaPredicted RBP13.4□□□□□ -0.26
LSM4-204ENST00000594828 TRAV23DV6A0A075B6W5 121 aa13.39□□□□□ -0.27
LSM4-204ENST00000594828 A0A0U1RQV1 116 aa13.38□□□□□ -0.27
LSM4-204ENST00000594828 SPINK1P00995 79 aa13.37□□□□□ -0.27
LSM4-204ENST00000594828 JOSD1Q15040 202 aaPredicted RBP13.37□□□□□ -0.27
LSM4-204ENST00000594828 LINC01545Q5VT33 79 aa13.37□□□□□ -0.27
LSM4-204ENST00000594828 PET117Q6UWS5 81 aa13.36□□□□□ -0.27
LSM4-204ENST00000594828 IGLV9-49A0A0B4J1Y8 123 aa13.35□□□□□ -0.27
LSM4-204ENST00000594828 ZNF73O43830 326 aaPredicted RBP13.35□□□□□ -0.27
LSM4-204ENST00000594828 FP248Q71RG6 208 aaPredicted RBP13.35□□□□□ -0.27
LSM4-204ENST00000594828 MOBPQ13875 183 aa13.34□□□□□ -0.27
LSM4-204ENST00000594828 SSBP3-AS1Q7Z2R9 100 aa13.34□□□□□ -0.27
LSM4-204ENST00000594828 LINC00308Q8TCZ7 52 aa13.33□□□□□ -0.28
LSM4-204ENST00000594828 LITAFQ99732 161 aa13.33□□□□□ -0.28
LSM4-204ENST00000594828 CBY1Q9Y3M2 126 aa13.33□□□□□ -0.28
LSM4-204ENST00000594828 TIMM17BO60830 172 aa13.32□□□□□ -0.28
LSM4-204ENST00000594828 SPANXCQ9NY87 97 aa13.31□□□□□ -0.28
LSM4-204ENST00000594828 ZNF815PA8K554 130 aa13.3□□□□□ -0.28
LSM4-204ENST00000594828 HINT1P49773 126 aaPredicted RBP13.3□□□□□ -0.28
LSM4-204ENST00000594828 C3orf79P0CE67 100 aa13.29□□□□□ -0.28
LSM4-204ENST00000594828 OR13C6PQ8NH95 151 aa13.29□□□□□ -0.28
LSM4-204ENST00000594828 TTTY13Q9BZ97 58 aa13.26□□□□□ -0.29
LSM4-204ENST00000594828 RPS29P62273 56 aaKnown RBP13.25□□□□□ -0.29
LSM4-204ENST00000594828 COA6Q5JTJ3 125 aaKnown RBP13.25□□□□□ -0.29
LSM4-204ENST00000594828 ST20-AS1Q8NBB2 130 aa13.25□□□□□ -0.29
LSM4-204ENST00000594828 MUC17Q685J3 4493 aa13.24□□□□□ -0.29
LSM4-204ENST00000594828 C5orf52A6NGY3 159 aa13.24□□□□□ -0.29
LSM4-204ENST00000594828 KRTDAPP60985 99 aa13.24□□□□□ -0.29
LSM4-204ENST00000594828 KRTAP13-3Q3SY46 172 aa13.23□□□□□ -0.29
LSM4-204ENST00000594828 C9orf153Q5TBE3 101 aa13.23□□□□□ -0.29
LSM4-204ENST00000594828 SPANXDQ9BXN6 97 aa13.23□□□□□ -0.29
LSM4-204ENST00000594828 Q8N377 158 aa13.22□□□□□ -0.29
LSM4-204ENST00000594828 LINC00518Q8N0U6 118 aa13.21□□□□□ -0.29
LSM4-204ENST00000594828 SLC25A20O43772 301 aa13.19□□□□□ -0.3
LSM4-204ENST00000594828 DHRS4-AS1Q9P1J3 65 aa13.19□□□□□ -0.3
LSM4-204ENST00000594828 C20orf202A1L168 122 aa13.17□□□□□ -0.3
LSM4-204ENST00000594828 SCGB1D4Q6XE38 83 aa13.17□□□□□ -0.3
LSM4-204ENST00000594828 SPRR1BP22528 89 aa13.15□□□□□ -0.3
LSM4-204ENST00000594828 COX7BP24311 80 aa13.14□□□□□ -0.31
LSM4-204ENST00000594828 C6orf99Q4VX62 202 aa13.14□□□□□ -0.31
LSM4-204ENST00000594828 ANKRD39Q53RE8 183 aa13.14□□□□□ -0.31
LSM4-204ENST00000594828 SLC25A34Q6PIV7 304 aa13.14□□□□□ -0.31
LSM4-204ENST00000594828 ELOF1P60002 83 aaKnown RBP13.13□□□□□ -0.31
LSM4-204ENST00000594828 ATOH7Q8N100 152 aa13.12□□□□□ -0.31
LSM4-204ENST00000594828 COPS9Q8WXC6 57 aa13.12□□□□□ -0.31
LSM4-204ENST00000594828 IFITM1P13164 125 aa13.1□□□□□ -0.31
LSM4-204ENST00000594828 LAMTOR3Q9UHA4 124 aa13.1□□□□□ -0.31
LSM4-204ENST00000594828 AKR1D1P51857 326 aa13.09□□□□□ -0.31
LSM4-204ENST00000594828 ASB16-AS1Q495Z4 193 aa13.09□□□□□ -0.31
LSM4-204ENST00000594828 LCE2AQ5TA79 106 aaPredicted RBP13.09□□□□□ -0.31
LSM4-204ENST00000594828 FAT4Q6V0I7 4981 aa13.09□□□□□ -0.31
LSM4-204ENST00000594828 Q6ZVH6 145 aa13.08□□□□□ -0.32
LSM4-204ENST00000594828 TRBV7-6A0A0J9YX20 115 aa13.07□□□□□ -0.32
LSM4-204ENST00000594828 TAL2Q16559 108 aa13.07□□□□□ -0.32
LSM4-204ENST00000594828 PCP2Q8IVA1 136 aa13.06□□□□□ -0.32
LSM4-204ENST00000594828 DEFB105AQ8NG35 78 aa13.06□□□□□ -0.32
LSM4-204ENST00000594828 A6NDN8 102 aa13.05□□□□□ -0.32
LSM4-204ENST00000594828 SEC61BP60468 96 aaKnown RBP13.05□□□□□ -0.32
LSM4-204ENST00000594828 MUSTN1Q8IVN3 82 aa13.05□□□□□ -0.32
LSM4-204ENST00000594828 HRCT1Q6UXD1 115 aa13.04□□□□□ -0.32
LSM4-204ENST00000594828 TEX49A0A1B0GTD5 131 aa13.02□□□□□ -0.33
LSM4-204ENST00000594828 A0A1B0GWB2 263 aa13.02□□□□□ -0.33
LSM4-204ENST00000594828 LIMD2Q9BT23 127 aa13.02□□□□□ -0.33
LSM4-204ENST00000594828 SNRPEP62304 92 aaKnown RBP13.01□□□□□ -0.33
LSM4-204ENST00000594828 Q1RN00 199 aa13.01□□□□□ -0.33
LSM4-204ENST00000594828 PRO1933Q9H354 126 aa12.98□□□□□ -0.33
LSM4-204ENST00000594828 TRAV13-2A0A0B4J235 113 aa12.97□□□□□ -0.33
LSM4-204ENST00000594828 XP32Q5T750 250 aa12.97□□□□□ -0.33
LSM4-204ENST00000594828 A4D1N5 150 aa12.95□□□□□ -0.34
LSM4-204ENST00000594828 S100A2P29034 98 aa12.95□□□□□ -0.34
LSM4-204ENST00000594828 CD164Q04900 197 aa12.95□□□□□ -0.34
LSM4-204ENST00000594828 SMIM29Q86T20 159 aa12.94□□□□□ -0.34
LSM4-204ENST00000594828 HIST3H2BBQ8N257 126 aa12.94□□□□□ -0.34
LSM4-204ENST00000594828 KRTAP4-1Q9BYQ7 146 aa12.94□□□□□ -0.34
LSM4-204ENST00000594828 IGLV5-48A0A075B6I7 105 aa12.93□□□□□ -0.34
LSM4-204ENST00000594828 LINC01547P58512 204 aaPredicted RBP12.93□□□□□ -0.34
LSM4-204ENST00000594828 SMIM11BQ8TCY0 68 aa12.93□□□□□ -0.34
LSM4-204ENST00000594828 HIST1H2BLQ99880 126 aa12.93□□□□□ -0.34
LSM4-204ENST00000594828 NHP2Q9NX24 153 aaKnown RBP12.91□□□□□ -0.34
LSM4-204ENST00000594828 HSBP1L1C9JCN9 74 aa12.9□□□□□ -0.34
LSM4-204ENST00000594828 H7C2G1 150 aa12.9□□□□□ -0.34
LSM4-204ENST00000594828 KRTAP9-2Q9BYQ4 174 aa12.88□□□□□ -0.35
LSM4-204ENST00000594828 VAMP3Q15836 100 aa12.85□□□□□ -0.35
LSM4-204ENST00000594828 A0A0G2JQZ4 141 aa12.84□□□□□ -0.35
LSM4-204ENST00000594828 C9orf92A6NGG3 77 aa12.84□□□□□ -0.35
LSM4-204ENST00000594828 S100A6P06703 90 aa12.84□□□□□ -0.35
LSM4-204ENST00000594828 Q5XG85 94 aa12.84□□□□□ -0.35
LSM4-204ENST00000594828 S100A1P23297 94 aa12.83□□□□□ -0.36
LSM4-204ENST00000594828 LINC00575Q6W349 94 aa12.79□□□□□ -0.36
LSM4-204ENST00000594828 C1orf195Q5TG92 126 aa12.78□□□□□ -0.36
LSM4-204ENST00000594828 SCGB1D1O95968 90 aa12.76□□□□□ -0.37
LSM4-204ENST00000594828 PCOTHQ58A44 107 aa12.76□□□□□ -0.37
LSM4-204ENST00000594828 hADV29S1A0JD25 119 aa12.75□□□□□ -0.37
LSM4-204ENST00000594828 F8WEM9 126 aa12.75□□□□□ -0.37
LSM4-204ENST00000594828 Q6ZQY7 126 aa12.73□□□□□ -0.37
LSM4-204ENST00000594828 HIST1H4GQ99525 98 aa12.73□□□□□ -0.37
LSM4-204ENST00000594828 IGLV8-61A0A075B6I0 122 aa12.71□□□□□ -0.37
LSM4-204ENST00000594828 TCL1BO95988 128 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms