RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 B5MCH6 92 aa8.61□□□□□ -1.03
VRK3-206ENST00000594090 SCGB1D1O95968 90 aa8.61□□□□□ -1.03
VRK3-206ENST00000594090 Q6ZVH6 145 aa8.6□□□□□ -1.03
VRK3-206ENST00000594090 PPDPFQ9H3Y8 114 aa8.6□□□□□ -1.03
VRK3-206ENST00000594090 HMCN2Q8NDA2 5059 aa8.59□□□□□ -1.03
VRK3-206ENST00000594090 IFITM1P13164 125 aa8.59□□□□□ -1.03
VRK3-206ENST00000594090 OR13C6PQ8NH95 151 aa8.59□□□□□ -1.03
VRK3-206ENST00000594090 TYMSOSQ8TAI1 123 aa8.59□□□□□ -1.03
VRK3-206ENST00000594090 SMCR5Q8TEV8 140 aa8.59□□□□□ -1.03
VRK3-206ENST00000594090 COPS9Q8WXC6 57 aa8.59□□□□□ -1.03
VRK3-206ENST00000594090 CBY1Q9Y3M2 126 aa8.59□□□□□ -1.03
VRK3-206ENST00000594090 KRTAP13-2Q52LG2 175 aa8.58□□□□□ -1.04
VRK3-206ENST00000594090 Q6ZRX8 168 aa8.58□□□□□ -1.04
VRK3-206ENST00000594090 LINC00518Q8N0U6 118 aa8.58□□□□□ -1.04
VRK3-206ENST00000594090 SPRR4Q96PI1 79 aa8.58□□□□□ -1.04
VRK3-206ENST00000594090 ZNF706Q9Y5V0 76 aaPredicted RBP8.58□□□□□ -1.04
VRK3-206ENST00000594090 ZNF73O43830 326 aaPredicted RBP8.57□□□□□ -1.04
VRK3-206ENST00000594090 MUSTN1Q8IVN3 82 aa8.56□□□□□ -1.04
VRK3-206ENST00000594090 Q9BRP9 147 aa8.56□□□□□ -1.04
VRK3-206ENST00000594090 ERC2-IT1O76042 136 aa8.54□□□□□ -1.04
VRK3-206ENST00000594090 JOSD1Q15040 202 aaPredicted RBP8.54□□□□□ -1.04
VRK3-206ENST00000594090 HINT1P49773 126 aaPredicted RBP8.53□□□□□ -1.04
VRK3-206ENST00000594090 COX8AP10176 69 aa8.52□□□□□ -1.05
VRK3-206ENST00000594090 C3orf22Q8N5N4 141 aa8.52□□□□□ -1.05
VRK3-206ENST00000594090 LINC00483Q53H64 154 aa8.51□□□□□ -1.05
VRK3-206ENST00000594090 C6orf99Q4VX62 202 aa8.5□□□□□ -1.05
VRK3-206ENST00000594090 PAM16Q9Y3D7 125 aa8.5□□□□□ -1.05
VRK3-206ENST00000594090 A6NDN8 102 aa8.49□□□□□ -1.05
VRK3-206ENST00000594090 SPATA45Q537H7 98 aa8.49□□□□□ -1.05
VRK3-206ENST00000594090 GAGE2AQ6NT46 116 aa8.49□□□□□ -1.05
VRK3-206ENST00000594090 LINC00304Q8N9R0 145 aa8.49□□□□□ -1.05
VRK3-206ENST00000594090 TMA7Q9Y2S6 64 aaKnown RBP8.49□□□□□ -1.05
VRK3-206ENST00000594090 DLEU1O43261 78 aa8.48□□□□□ -1.05
VRK3-206ENST00000594090 TSPAN13O95857 204 aa8.48□□□□□ -1.05
VRK3-206ENST00000594090 ELOF1P60002 83 aaKnown RBP8.48□□□□□ -1.05
VRK3-206ENST00000594090 VAMP8Q9BV40 100 aa8.48□□□□□ -1.05
VRK3-206ENST00000594090 TRAV13-2A0A0B4J235 113 aa8.47□□□□□ -1.05
VRK3-206ENST00000594090 A4D1N5 150 aa8.46□□□□□ -1.05
VRK3-206ENST00000594090 COX7BP24311 80 aa8.46□□□□□ -1.05
VRK3-206ENST00000594090 C14orf144Q96I85 54 aa8.46□□□□□ -1.05
VRK3-206ENST00000594090 HIST1H4GQ99525 98 aa8.46□□□□□ -1.06
VRK3-206ENST00000594090 DHRS4-AS1Q9P1J3 65 aa8.46□□□□□ -1.06
VRK3-206ENST00000594090 TRBV7-6A0A0J9YX20 115 aa8.45□□□□□ -1.06
VRK3-206ENST00000594090 ST20-AS1Q8NBB2 130 aa8.45□□□□□ -1.06
VRK3-206ENST00000594090 PYY3Q5JQD4 70 aa8.44□□□□□ -1.06
VRK3-206ENST00000594090 SMIM11BQ8TCY0 68 aa8.44□□□□□ -1.06
VRK3-206ENST00000594090 A0A1B0GWB2 263 aa8.43□□□□□ -1.06
VRK3-206ENST00000594090 IGLV9-49A0A0B4J1Y8 123 aa8.42□□□□□ -1.06
VRK3-206ENST00000594090 MOBPQ13875 183 aa8.42□□□□□ -1.06
VRK3-206ENST00000594090 SLC25A34Q6PIV7 304 aa8.42□□□□□ -1.06
VRK3-206ENST00000594090 Q8NBF4 154 aa8.42□□□□□ -1.06
VRK3-206ENST00000594090 HIGD1BQ9P298 99 aa8.42□□□□□ -1.06
VRK3-206ENST00000594090 LRP2P98164 4655 aa8.42□□□□□ -1.06
VRK3-206ENST00000594090 CTAG1AP78358 180 aa8.41□□□□□ -1.06
VRK3-206ENST00000594090 PRR4Q16378 134 aa8.41□□□□□ -1.06
VRK3-206ENST00000594090 SPAG11AQ6PDA7 123 aa8.41□□□□□ -1.06
VRK3-206ENST00000594090 C2orf91Q6ZV80 131 aa8.41□□□□□ -1.06
VRK3-206ENST00000594090 C12orf57Q99622 126 aa8.4□□□□□ -1.06
VRK3-206ENST00000594090 SPRR1BP22528 89 aa8.39□□□□□ -1.07
VRK3-206ENST00000594090 C4orf48Q5BLP8 95 aa8.37□□□□□ -1.07
VRK3-206ENST00000594090 SSBP3-AS1Q7Z2R9 100 aa8.37□□□□□ -1.07
VRK3-206ENST00000594090 LPAP08519 4548 aa8.37□□□□□ -1.07
VRK3-206ENST00000594090 C9orf153Q5TBE3 101 aa8.37□□□□□ -1.07
VRK3-206ENST00000594090 RETNLBQ9BQ08 111 aa8.37□□□□□ -1.07
VRK3-206ENST00000594090 NHP2Q9NX24 153 aaKnown RBP8.36□□□□□ -1.07
VRK3-206ENST00000594090 VAMP3Q15836 100 aa8.35□□□□□ -1.07
VRK3-206ENST00000594090 TAL2Q16559 108 aa8.35□□□□□ -1.07
VRK3-206ENST00000594090 SPINK1P00995 79 aa8.34□□□□□ -1.07
VRK3-206ENST00000594090 CFC1BP0CG36 223 aa8.34□□□□□ -1.07
VRK3-206ENST00000594090 CFC1P0CG37 223 aa8.34□□□□□ -1.07
VRK3-206ENST00000594090 CEND1Q8N111 149 aa8.34□□□□□ -1.07
VRK3-206ENST00000594090 DEFB105AQ8NG35 78 aa8.34□□□□□ -1.07
VRK3-206ENST00000594090 LAMTOR3Q9UHA4 124 aa8.34□□□□□ -1.07
VRK3-206ENST00000594090 IGLV5-48A0A075B6I7 105 aa8.33□□□□□ -1.08
VRK3-206ENST00000594090 TEX49A0A1B0GTD5 131 aa8.33□□□□□ -1.08
VRK3-206ENST00000594090 LINC01547P58512 204 aaPredicted RBP8.33□□□□□ -1.08
VRK3-206ENST00000594090 A0A0B4J2C4 111 aa8.32□□□□□ -1.08
VRK3-206ENST00000594090 SLC25A20O43772 301 aa8.32□□□□□ -1.08
VRK3-206ENST00000594090 LINC00575Q6W349 94 aa8.32□□□□□ -1.08
VRK3-206ENST00000594090 Q1RN00 199 aa8.31□□□□□ -1.08
VRK3-206ENST00000594090 RAB37Q96AX2 223 aa8.31□□□□□ -1.08
VRK3-206ENST00000594090 H7C2G1 150 aa8.3□□□□□ -1.08
VRK3-206ENST00000594090 RPS29P62273 56 aaKnown RBP8.3□□□□□ -1.08
VRK3-206ENST00000594090 BVES-AS1Q5T3Y7 98 aa8.3□□□□□ -1.08
VRK3-206ENST00000594090 TMEM238LA0A1B0GVL6 79 aa8.29□□□□□ -1.08
VRK3-206ENST00000594090 A6NJY4 79 aa8.29□□□□□ -1.08
VRK3-206ENST00000594090 FXYD2P54710 66 aa8.29□□□□□ -1.08
VRK3-206ENST00000594090 LOC105371267A0A1B0GV96 52 aa8.29□□□□□ -1.08
VRK3-206ENST00000594090 hADV29S1A0JD25 119 aa8.29□□□□□ -1.08
VRK3-206ENST00000594090 SMIM29Q86T20 159 aa8.29□□□□□ -1.08
VRK3-206ENST00000594090 HSD52Q0P140 79 aa8.28□□□□□ -1.08
VRK3-206ENST00000594090 Q8N377 158 aa8.28□□□□□ -1.08
VRK3-206ENST00000594090 UBR4Q5T4S7 5183 aa8.27□□□□□ -1.09
VRK3-206ENST00000594090 IGLV7-46A0A075B6I9 117 aa8.27□□□□□ -1.09
VRK3-206ENST00000594090 UQCR10Q9UDW1 63 aa8.27□□□□□ -1.09
VRK3-206ENST00000594090 Q6ZQY7 126 aa8.26□□□□□ -1.09
VRK3-206ENST00000594090 FP248Q71RG6 208 aaPredicted RBP8.26□□□□□ -1.09
VRK3-206ENST00000594090 PRO1854Q9UHT4 67 aa8.25□□□□□ -1.09
VRK3-206ENST00000594090 TPRXLQ17RH7 258 aa8.24□□□□□ -1.09
VRK3-206ENST00000594090 PRO1933Q9H354 126 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 111.8 ms